Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C848
  Reference Plasmid   NZ_CP069991.1
  Reference Plasmid Size   133493
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0184617 JHCCKBNG_00033 30304 10 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -4276A>C None
M0184618 JHCCKBNG_00041 32092 10 Gut 0.83 protein_coding synonymous_variant LOW 2109G>A Leu703Leu
M0184619 JHCCKBNG_00041 32311 10 Gut 0.83 protein_coding missense_variant MODERATE 1890A>G Ile630Met
M0184620 JHCCKBNG_00041 32331 10 Gut 0.83 protein_coding missense_variant MODERATE 1870C>T His624Tyr
M0184621 JHCCKBNG_00041 32507 10 Gut 0.83 protein_coding missense_variant MODERATE 1694G>A Gly565Asp
M0184622 JHCCKBNG_00041 32529 10 Gut 0.83 protein_coding missense_variant MODERATE 1672C>A Leu558Met
M0184623 JHCCKBNG_00038 34283 10 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -4442A>G None
M0184624 JHCCKBNG_00042 34497 10 Gut 0.83 protein_coding missense_variant MODERATE 649T>C Phe217Leu
M0184625 JHCCKBNG_00043 35528 10 Gut 0.83 protein_coding missense_variant MODERATE 477A>G Ile159Met
M0184626 JHCCKBNG_00043 35838 10 Gut 0.83 protein_coding missense_variant MODERATE 167A>G Gln56Arg
M0184627 JHCCKBNG_00040 36279 10 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -4409A>G None
M0184628 JHCCKBNG_00021 18650 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -2575C>T None
M0184629 JHCCKBNG_00026 18695 3 Gut 0.25 protein_coding synonymous_variant LOW 1500T>C Cys500Cys
M0184630 JHCCKBNG_00026 18697 3 Gut 0.25 protein_coding missense_variant MODERATE 1498T>G Cys500Gly
M0184631 JHCCKBNG_00041 38101 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3901T>C None
M0184632 JHCCKBNG_00041 38202 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4002A>G None
M0184633 JHCCKBNG_00045 38621 3 Gut 0.25 protein_coding missense_variant MODERATE 214T>G Tyr72Asp
M0184634 JHCCKBNG_00045 38784 3 Gut 0.25 protein_coding synonymous_variant LOW 51G>A Gly17Gly
M0184635 JHCCKBNG_00046 39229 3 Gut 0.25 protein_coding synonymous_variant LOW 267G>T Gly89Gly
M0184636 JHCCKBNG_00046 39286 3 Gut 0.25 protein_coding synonymous_variant LOW 324G>A Arg108Arg
M0184637 JHCCKBNG_00047 39440 3 Gut 0.25 protein_coding missense_variant MODERATE 400A>T Arg134Trp
M0184638 JHCCKBNG_00048 39846 3 Gut 0.25 protein_coding missense_variant MODERATE 251G>A Gly84Asp
M0184639 JHCCKBNG_00042 40101 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4956A>G None
M0184640 JHCCKBNG_00043 40176 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4172G>A None
M0184641 JHCCKBNG_00049 40236 3 Gut 0.25 protein_coding synonymous_variant LOW 39G>A Gln13Gln
M0184642 JHCCKBNG_00049 40237 3 Gut 0.25 protein_coding synonymous_variant LOW 40A>C Arg14Arg
M0184643 JHCCKBNG_00049 40242 3 Gut 0.25 protein_coding synonymous_variant LOW 45G>A Ala15Ala
M0184644 JHCCKBNG_00049 40243 3 Gut 0.25 protein_coding missense_variant MODERATE 46A>G Ile16Val
M0184645 JHCCKBNG_00049 40245 3 Gut 0.25 protein_coding synonymous_variant LOW 48T>C Ile16Ile
M0184646 JHCCKBNG_00049 40284 3 Gut 0.25 protein_coding synonymous_variant LOW 87G>A Gln29Gln
M0184647 JHCCKBNG_00049 40291 3 Gut 0.25 protein_coding missense_variant MODERATE 94G>A Ala32Thr
M0184648 JHCCKBNG_00049 40308 3 Gut 0.25 protein_coding synonymous_variant LOW 111C>T Ala37Ala
M0184649 JHCCKBNG_00049 40326 3 Gut 0.25 protein_coding synonymous_variant LOW 129A>G Thr43Thr
M0184650 JHCCKBNG_00049 40345 3 Gut 0.25 protein_coding missense_variant MODERATE 148T>C Trp50Arg
M0184651 JHCCKBNG_00049 40350 3 Gut 0.25 protein_coding synonymous_variant LOW 153A>T Val51Val
M0184652 JHCCKBNG_00049 40374 3 Gut 0.25 protein_coding synonymous_variant LOW 177A>G Gly59Gly
M0184653 JHCCKBNG_00049 40386 3 Gut 0.25 protein_coding synonymous_variant LOW 189C>A Gly63Gly
M0184654 JHCCKBNG_00049 40428 3 Gut 0.25 protein_coding synonymous_variant LOW 231A>G Glu77Glu
M0184655 JHCCKBNG_00049 40503 3 Gut 0.25 protein_coding synonymous_variant LOW 306C>T Phe102Phe
M0184656 JHCCKBNG_00049 40521 3 Gut 0.25 protein_coding synonymous_variant LOW 324G>A Lys108Lys
M0184657 JHCCKBNG_00050 40548 3 Gut 0.25 protein_coding missense_variant MODERATE 25A>G Lys9Glu
M0184658 JHCCKBNG_00050 40552 3 Gut 0.25 protein_coding missense_variant MODERATE 29T>A Leu10Gln
M0184659 JHCCKBNG_00050 40569 3 Gut 0.25 protein_coding missense_variant MODERATE 46G>C Val16Leu
M0184660 JHCCKBNG_00050 40577 3 Gut 0.25 protein_coding synonymous_variant LOW 54T>C Ser18Ser
M0184661 JHCCKBNG_00050 40583 3 Gut 0.25 protein_coding synonymous_variant LOW 60A>G Leu20Leu
M0184662 JHCCKBNG_00050 40634 3 Gut 0.25 protein_coding synonymous_variant LOW 111T>G Pro37Pro
M0184663 JHCCKBNG_00050 40687 3 Gut 0.25 protein_coding missense_variant MODERATE 164T>A Leu55Gln
M0184664 JHCCKBNG_00050 40702 3 Gut 0.25 protein_coding missense_variant MODERATE 179G>A Gly60Glu
M0184665 JHCCKBNG_00050 40703 3 Gut 0.25 protein_coding synonymous_variant LOW 180G>A Gly60Gly
M0184666 JHCCKBNG_00050 40709 3 Gut 0.25 protein_coding synonymous_variant LOW 186T>C His62His
M0184667 JHCCKBNG_00050 40710 3 Gut 0.25 protein_coding missense_variant MODERATE 187C>A Gln63Lys
M0184668 JHCCKBNG_00050 40757 3 Gut 0.25 protein_coding synonymous_variant LOW 234A>T Gly78Gly
M0184669 JHCCKBNG_00050 40763 3 Gut 0.25 protein_coding synonymous_variant LOW 240G>A Arg80Arg
M0184670 JHCCKBNG_00050 40766 3 Gut 0.25 protein_coding synonymous_variant LOW 243A>G Val81Val
M0184671 JHCCKBNG_00050 40775 3 Gut 0.25 protein_coding synonymous_variant LOW 252T>C Cys84Cys
M0184672 JHCCKBNG_00050 40778 3 Gut 0.25 protein_coding synonymous_variant LOW 255A>T Thr85Thr
M0184673 JHCCKBNG_00050 40784 3 Gut 0.25 protein_coding synonymous_variant LOW 261G>A Ala87Ala
M0184674 JHCCKBNG_00050 40787 3 Gut 0.25 protein_coding synonymous_variant LOW 264C>T Arg88Arg
M0184675 JHCCKBNG_00050 40838 3 Gut 0.25 protein_coding synonymous_variant LOW 315C>T Arg105Arg
M0184676 JHCCKBNG_00050 40841 3 Gut 0.25 protein_coding synonymous_variant LOW 318T>G Thr106Thr
M0184677 JHCCKBNG_00050 40845 3 Gut 0.25 protein_coding missense_variant MODERATE 322G>A Val108Ile
M0184678 JHCCKBNG_00082 67927 3 Gut 0.25 protein_coding synonymous_variant LOW 153G>A Ala51Ala
M0184679 JHCCKBNG_00082 68011 3 Gut 0.25 protein_coding missense_variant MODERATE 69G>C Arg23Ser
M0184680 JHCCKBNG_00083 68230 3 Gut 0.25 protein_coding synonymous_variant LOW 651C>G Ser217Ser
M0184681 JHCCKBNG_00083 68269 3 Gut 0.25 protein_coding synonymous_variant LOW 612T>C Ala204Ala
M0184682 JHCCKBNG_00083 68374 3 Gut 0.25 protein_coding synonymous_variant LOW 507G>A Arg169Arg
M0184683 JHCCKBNG_00083 68405 3 Gut 0.25 protein_coding missense_variant MODERATE 476T>C Val159Ala
M0184684 JHCCKBNG_00083 68671 3 Gut 0.25 protein_coding synonymous_variant LOW 210G>T Leu70Leu
M0184685 JHCCKBNG_00083 68815 3 Gut 0.25 protein_coding missense_variant MODERATE 66T>G Phe22Leu
M0184686 JHCCKBNG_00075 68884 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4640G>A None
M0184687 JHCCKBNG_00075 68889 3 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4645T>C None
M0184688 JHCCKBNG_00084 68913 3 Gut 0.25 protein_coding missense_variant MODERATE 5258T>C Leu1753Pro
M0184689 JHCCKBNG_00084 68966 3 Gut 0.25 protein_coding synonymous_variant LOW 5205A>T Arg1735Arg
M0184690 JHCCKBNG_00084 69012 3 Gut 0.25 protein_coding missense_variant MODERATE 5159A>G Gln1720Arg
M0184691 JHCCKBNG_00084 69067 3 Gut 0.25 protein_coding missense_variant MODERATE 5104T>A Ser1702Thr
M0184692 JHCCKBNG_00084 69076 3 Gut 0.25 protein_coding missense_variant MODERATE 5095T>G Ser1699Ala
M0184693 JHCCKBNG_00084 69092 3 Gut 0.25 protein_coding synonymous_variant LOW 5079A>G Gly1693Gly
M0184694 JHCCKBNG_00084 69101 3 Gut 0.25 protein_coding synonymous_variant LOW 5070G>A Glu1690Glu
M0184695 JHCCKBNG_00084 69114 3 Gut 0.25 protein_coding missense_variant MODERATE 5057A>T Gln1686Leu
M0184696 JHCCKBNG_00084 69176 3 Gut 0.25 protein_coding synonymous_variant LOW 4995G>A Ala1665Ala
M0184697 JHCCKBNG_00084 69179 3 Gut 0.25 protein_coding synonymous_variant LOW 4992T>C Arg1664Arg
M0184698 JHCCKBNG_00084 69182 3 Gut 0.25 protein_coding synonymous_variant LOW 4989C>T Arg1663Arg
M0184699 JHCCKBNG_00084 69263 3 Gut 0.25 protein_coding synonymous_variant LOW 4908T>A Gly1636Gly
M0184700 JHCCKBNG_00084 69279 3 Gut 0.25 protein_coding missense_variant MODERATE 4892G>A Ser1631Asn
M0184701 JHCCKBNG_00084 69294 3 Gut 0.25 protein_coding missense_variant MODERATE 4877T>G Val1626Gly
M0184702 JHCCKBNG_00084 69305 3 Gut 0.25 protein_coding synonymous_variant LOW 4866T>C Gly1622Gly
M0184703 JHCCKBNG_00084 69309 3 Gut 0.25 protein_coding missense_variant MODERATE 4862G>A Gly1621Asp
M0184704 JHCCKBNG_00084 69338 3 Gut 0.25 protein_coding synonymous_variant LOW 4833T>C Gly1611Gly
M0184705 JHCCKBNG_00084 69353 3 Gut 0.25 protein_coding missense_variant MODERATE 4818A>C Arg1606Ser
M0184706 JHCCKBNG_00084 69368 3 Gut 0.25 protein_coding synonymous_variant LOW 4803C>T Ser1601Ser
M0184707 JHCCKBNG_00084 69398 3 Gut 0.25 protein_coding synonymous_variant LOW 4773T>C Gly1591Gly
M0184708 JHCCKBNG_00084 69428 3 Gut 0.25 protein_coding synonymous_variant LOW 4743G>A Glu1581Glu
M0184709 JHCCKBNG_00084 69443 3 Gut 0.25 protein_coding synonymous_variant LOW 4728T>C Gly1576Gly
M0184710 JHCCKBNG_00084 69482 3 Gut 0.25 protein_coding synonymous_variant LOW 4689G>A Val1563Val
M0184711 JHCCKBNG_00084 69488 3 Gut 0.25 protein_coding synonymous_variant LOW 4683A>T Gly1561Gly
M0184712 JHCCKBNG_00084 69536 3 Gut 0.25 protein_coding synonymous_variant LOW 4635A>G Pro1545Pro
M0184713 JHCCKBNG_00084 69599 3 Gut 0.25 protein_coding synonymous_variant LOW 4572G>A Gln1524Gln
M0184714 JHCCKBNG_00084 69620 3 Gut 0.25 protein_coding synonymous_variant LOW 4551A>T Ala1517Ala
M0184715 JHCCKBNG_00084 69638 3 Gut 0.25 protein_coding synonymous_variant LOW 4533C>T Ser1511Ser
M0184716 JHCCKBNG_00084 69659 3 Gut 0.25 protein_coding synonymous_variant LOW 4512A>G Ala1504Ala
M0184717 JHCCKBNG_00084 69701 3 Gut 0.25 protein_coding synonymous_variant LOW 4470A>G Glu1490Glu
M0184718 JHCCKBNG_00084 69707 3 Gut 0.25 protein_coding synonymous_variant LOW 4464A>G Ala1488Ala
M0184719 JHCCKBNG_00084 69758 3 Gut 0.25 protein_coding synonymous_variant LOW 4413A>G Glu1471Glu
M0184720 JHCCKBNG_00084 69776 3 Gut 0.25 protein_coding synonymous_variant LOW 4395G>T Thr1465Thr
M0184721 JHCCKBNG_00106 91751 3 Gut 0.25 protein_coding missense_variant MODERATE 247G>A Gly83Ser
M0184722 JHCCKBNG_00106 91923 3 Gut 0.25 protein_coding synonymous_variant LOW 75C>T Gly25Gly
M0184723 JHCCKBNG_00107 92054 3 Gut 0.25 protein_coding synonymous_variant LOW 327A>T Ala109Ala
M0184724 JHCCKBNG_00107 92245 3 Gut 0.25 protein_coding missense_variant MODERATE 136G>A Val46Met
M0184725 JHCCKBNG_00108 92647 3 Gut 0.25 protein_coding synonymous_variant LOW 2361C>T Gly787Gly
M0184726 JHCCKBNG_00108 92680 3 Gut 0.25 protein_coding synonymous_variant LOW 2328T>C Asp776Asp
M0184727 JHCCKBNG_00108 92686 3 Gut 0.25 protein_coding synonymous_variant LOW 2322C>T Phe774Phe
M0184728 JHCCKBNG_00108 92687 3 Gut 0.25 protein_coding missense_variant MODERATE 2321T>A Phe774Tyr
M0184729 JHCCKBNG_00108 92689 3 Gut 0.25 protein_coding synonymous_variant LOW 2319A>G Leu773Leu
M0184730 JHCCKBNG_00108 92691 3 Gut 0.25 protein_coding synonymous_variant LOW 2317T>C Leu773Leu
M0184731 JHCCKBNG_00108 92698 3 Gut 0.25 protein_coding synonymous_variant LOW 2310T>C Tyr770Tyr
M0184732 JHCCKBNG_00108 92704 3 Gut 0.25 protein_coding synonymous_variant LOW 2304G>A Ala768Ala
M0184733 JHCCKBNG_00108 92827 3 Gut 0.25 protein_coding synonymous_variant LOW 2181C>T Ala727Ala
M0184734 JHCCKBNG_00108 92839 3 Gut 0.25 protein_coding synonymous_variant LOW 2169C>T Arg723Arg
M0184735 JHCCKBNG_00108 92842 3 Gut 0.25 protein_coding synonymous_variant LOW 2166C>T Arg722Arg
M0184736 JHCCKBNG_00108 92845 3 Gut 0.25 protein_coding synonymous_variant LOW 2163T>C Cys721Cys
M0184737 JHCCKBNG_00108 92846 3 Gut 0.25 protein_coding missense_variant MODERATE 2162G>C Cys721Ser
M0184738 JHCCKBNG_00108 92847 3 Gut 0.25 protein_coding missense_variant MODERATE 2161T>G Cys721Gly
M0184739 JHCCKBNG_00108 92851 3 Gut 0.25 protein_coding synonymous_variant LOW 2157C>T Arg719Arg
M0184740 JHCCKBNG_00108 92863 3 Gut 0.25 protein_coding synonymous_variant LOW 2145A>G Gln715Gln
M0184741 JHCCKBNG_00108 92865 3 Gut 0.25 protein_coding missense_variant MODERATE 2143C>G Gln715Glu
M0184742 JHCCKBNG_00108 92881 3 Gut 0.25 protein_coding synonymous_variant LOW 2127A>G Lys709Lys
M0184743 JHCCKBNG_00108 92884 3 Gut 0.25 protein_coding synonymous_variant LOW 2124T>C Arg708Arg
M0184744 JHCCKBNG_00108 92885 3 Gut 0.25 protein_coding missense_variant MODERATE 2123G>A Arg708His
M0184745 JHCCKBNG_00108 92941 3 Gut 0.25 protein_coding synonymous_variant LOW 2067T>C Thr689Thr
M0184746 JHCCKBNG_00108 92942 3 Gut 0.25 protein_coding missense_variant MODERATE 2066C>A Thr689Asn
M0184747 JHCCKBNG_00108 93163 3 Gut 0.25 protein_coding synonymous_variant LOW 1845C>T Thr615Thr
M0184748 JHCCKBNG_00108 93523 3 Gut 0.25 protein_coding synonymous_variant LOW 1485A>G Gly495Gly
M0184749 JHCCKBNG_00117 100864 3 Gut 0.25 protein_coding synonymous_variant LOW 144T>C Ala48Ala
M0184750 JHCCKBNG_00118 101213 3 Gut 0.25 protein_coding missense_variant MODERATE 128T>C Ile43Thr
M0184751 JHCCKBNG_00118 101229 3 Gut 0.25 protein_coding missense_variant MODERATE 112A>G Ile38Val
M0184752 JHCCKBNG_00118 101284 3 Gut 0.25 protein_coding synonymous_variant LOW 57T>C Asn19Asn
M0184753 JHCCKBNG_00118 101302 3 Gut 0.25 protein_coding synonymous_variant LOW 39T>C Phe13Phe
M0184754 JHCCKBNG_00118 101336 3 Gut 0.25 protein_coding missense_variant MODERATE 5C>T Ser2Leu
M0184755 JHCCKBNG_00119 101426 3 Gut 0.25 protein_coding missense_variant MODERATE 289A>G Ile97Val
M0184756 JHCCKBNG_00119 101451 3 Gut 0.25 protein_coding synonymous_variant LOW 264G>A Ala88Ala
M0184757 JHCCKBNG_00119 101463 3 Gut 0.25 protein_coding synonymous_variant LOW 252G>T Val84Val
M0184758 JHCCKBNG_00119 101466 3 Gut 0.25 protein_coding synonymous_variant LOW 249G>A Glu83Glu
M0184759 JHCCKBNG_00119 101480 3 Gut 0.25 protein_coding missense_variant MODERATE 235A>G Ile79Val
M0184760 JHCCKBNG_00119 101501 3 Gut 0.25 protein_coding missense_variant MODERATE 214A>G Asn72Asp
M0184761 JHCCKBNG_00044 36524 3 Gut 0.25 protein_coding missense_variant MODERATE 403G>T Ala135Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
JHCCKBNG_00040 VFG001827 ShET2 99.7 7.9e-225 1 391 1.0 1 Exotoxin enterotoxin experiment
JHCCKBNG_00040 VFG036084 Enterotoxin SenB/TieB 100 1.2e-224 1 391 1.0 1 Exotoxin enterotoxin production-related protein TieB prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
JHCCKBNG_00040 PHI:10795 senB 100 4.2e-225 1 391 1.0000 1.0000 primates neonatal meningitis enterotoxin increased virulence (hypervirulence)
JHCCKBNG_00041 PHI:10794 cjrC 100 0 1 753 1.0000 1.0000 primates neonatal meningitis TonB-dependent colicin J protein increased virulence (hypervirulence)
JHCCKBNG_00042 PHI:10793 cjrB 100 1.7e-137 1 258 1.0000 1.0000 primates neonatal meningitis colicin Js sensitivity protein increased virulence (hypervirulence)
JHCCKBNG_00043 PHI:10792 cjrA 100 3.6e-162 1 283 1.0000 0.9725 primates neonatal meningitis iron-regulated protein increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JHCCKBNG_00123 AXI38019.1|GH23 100 2.02e-123 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JHCCKBNG_00041 1.B.14.7.1 100 0 1 753 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
JHCCKBNG_00042 2.C.1.1.3 100 3.7e-137 1 258 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.C Ion-gradient-driven energizers 2.C.1 The TonB-ExbB-ExbD/TolA-TolQ-TolR Outer Membrane Receptor Energizers and Stabilizers (TonB/TolA) Family
JHCCKBNG_00064 2.A.108.2.10 100 5e-101 3 175 0.9886 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.108 The Iron/Lead Transporter (ILT) Family
JHCCKBNG_00065 2.A.108.2.10 100 0 1 628 1.0000 3.6301 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.108 The Iron/Lead Transporter (ILT) Family
JHCCKBNG_00076 1.E.53.1.11 98 3.2e-21 1 49 1.0000 0.7206 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family