Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C851
  Reference Plasmid   NZ_CP070059.1
  Reference Plasmid Size   28412
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0104357 CBJLCLJG_00003 3342 11 Skin 0.48 protein_coding synonymous_variant LOW 444G>A Arg148Arg
M0104358 CBJLCLJG_00001 3726 9 Skin 0.39 protein_coding downstream_gene_variant MODIFIER *2023T>C None
M0104359 CBJLCLJG_00004 4338 10 Skin 0.43 protein_coding synonymous_variant LOW 462A>G Ser154Ser
M0104360 CBJLCLJG_00004 4362 10 Skin 0.43 protein_coding synonymous_variant LOW 438A>G Gly146Gly
M0104361 CBJLCLJG_00004 4629 9 Skin 0.39 protein_coding missense_variant MODERATE 171C>A Asn57Lys
M0104362 CBJLCLJG_00005 5027 9 Skin 0.39 protein_coding synonymous_variant LOW 498G>A Leu166Leu
M0104363 CBJLCLJG_00005 5057 8 Skin 0.35 protein_coding synonymous_variant LOW 468C>T Ile156Ile
M0104364 CBJLCLJG_00007 6268 8 Skin 0.35 protein_coding synonymous_variant LOW 1282T>C Leu428Leu
M0104365 CBJLCLJG_00007 6424 9 Skin 0.39 protein_coding synonymous_variant LOW 1126T>C Leu376Leu
M0104366 CBJLCLJG_00008 8219 9 Skin 0.39 protein_coding missense_variant MODERATE 744C>A Asn248Lys
M0104367 CBJLCLJG_00008 8429 9 Skin 0.39 protein_coding missense_variant MODERATE 534A>G Ile178Met
M0104368 CBJLCLJG_00008 8783 10 Skin 0.43 protein_coding synonymous_variant LOW 180T>C Ser60Ser
M0104369 CBJLCLJG_00008 8849 9 Skin 0.39 protein_coding synonymous_variant LOW 114A>G Glu38Glu
M0104370 CBJLCLJG_00009 9342 9 Skin 0.39 protein_coding missense_variant MODERATE 214G>C Glu72Gln
M0104371 CBJLCLJG_00010 9684 9 Skin 0.39 protein_coding missense_variant MODERATE 1266T>G Phe422Leu
M0104372 CBJLCLJG_00011 12236 7 Skin 0.30 protein_coding missense_variant MODERATE 13G>A Val5Ile
M0104373 CBJLCLJG_00020 24243 5 Skin 0.22 protein_coding synonymous_variant LOW 741A>C Thr247Thr
M0104374 CBJLCLJG_00020 24365 3 Skin 0.13 protein_coding missense_variant MODERATE 619G>A Val207Ile
M0104375 CBJLCLJG_00020 24369 4 Skin 0.17 protein_coding synonymous_variant LOW 615T>C Phe205Phe
M0104376 CBJLCLJG_00020 24438 3 Skin 0.13 protein_coding synonymous_variant LOW 546A>G Ser182Ser
M0104377 CBJLCLJG_00020 24512 3 Skin 0.13 protein_coding missense_variant MODERATE 472G>A Asp158Asn
M0104378 CBJLCLJG_00020 24770 7 Skin 0.30 protein_coding synonymous_variant LOW 214C>T Leu72Leu
M0104379 CBJLCLJG_00015 25165 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4817C>T None
M0104380 CBJLCLJG_00016 25352 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4056C>T None
M0104381 CBJLCLJG_00016 25399 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4103T>C None
M0104382 CBJLCLJG_00021 25436 6 Skin 0.26 protein_coding synonymous_variant LOW 21C>T Val7Val
M0104383 CBJLCLJG_00021 25541 3 Skin 0.13 protein_coding synonymous_variant LOW 126T>C Asp42Asp
M0104384 CBJLCLJG_00021 25823 4 Skin 0.17 protein_coding synonymous_variant LOW 408G>A Glu136Glu
M0104385 CBJLCLJG_00021 25920 6 Skin 0.26 protein_coding missense_variant MODERATE 505A>G Thr169Ala
M0104386 CBJLCLJG_00010 10734 6 Skin 0.26 protein_coding synonymous_variant LOW 216C>T Phe72Phe
M0104387 CBJLCLJG_00011 11166 6 Skin 0.26 protein_coding synonymous_variant LOW 1083C>T Cys361Cys
M0104388 CBJLCLJG_00011 11300 6 Skin 0.26 protein_coding missense_variant MODERATE 949G>C Glu317Gln
M0104389 CBJLCLJG_00011 11757 6 Skin 0.26 protein_coding synonymous_variant LOW 492C>A Ile164Ile
M0104390 CBJLCLJG_00011 12133 6 Skin 0.26 protein_coding missense_variant MODERATE 116A>G Asn39Ser
M0104391 CBJLCLJG_00012 12376 6 Skin 0.26 protein_coding synonymous_variant LOW 135G>A Ser45Ser
M0104392 CBJLCLJG_00012 12389 6 Skin 0.26 protein_coding missense_variant MODERATE 122T>C Ile41Thr
M0104393 CBJLCLJG_00012 12499 6 Skin 0.26 protein_coding synonymous_variant LOW 12A>G Lys4Lys
M0104394 CBJLCLJG_00013 12639 5 Skin 0.22 protein_coding missense_variant MODERATE 5265G>T Lys1755Asn
M0104395 CBJLCLJG_00013 12834 5 Skin 0.22 protein_coding synonymous_variant LOW 5070G>A Arg1690Arg
M0104396 CBJLCLJG_00013 13104 5 Skin 0.22 protein_coding synonymous_variant LOW 4800C>T Gly1600Gly
M0104397 CBJLCLJG_00013 13302 5 Skin 0.22 protein_coding synonymous_variant LOW 4602G>A Gly1534Gly
M0104398 CBJLCLJG_00013 14156 7 Skin 0.30 protein_coding missense_variant MODERATE 3748A>G Lys1250Glu
M0104399 CBJLCLJG_00013 14379 6 Skin 0.26 protein_coding synonymous_variant LOW 3525A>G Lys1175Lys
M0104400 CBJLCLJG_00013 14505 6 Skin 0.26 protein_coding synonymous_variant LOW 3399A>G Gln1133Gln
M0104401 CBJLCLJG_00013 14562 6 Skin 0.26 protein_coding synonymous_variant LOW 3342C>A Gly1114Gly
M0104402 CBJLCLJG_00013 15276 6 Skin 0.26 protein_coding synonymous_variant LOW 2628C>T Phe876Phe
M0104403 CBJLCLJG_00013 15495 7 Skin 0.30 protein_coding synonymous_variant LOW 2409T>C Asp803Asp
M0104404 CBJLCLJG_00013 16830 6 Skin 0.26 protein_coding missense_variant MODERATE 1074A>G Ile358Met
M0104405 CBJLCLJG_00013 16926 6 Skin 0.26 protein_coding synonymous_variant LOW 978A>G Thr326Thr
M0104406 CBJLCLJG_00013 17463 5 Skin 0.22 protein_coding synonymous_variant LOW 441T>C Leu147Leu
M0104407 CBJLCLJG_00013 17650 6 Skin 0.26 protein_coding missense_variant MODERATE 254G>A Ser85Asn
M0104408 CBJLCLJG_00013 17824 5 Skin 0.22 protein_coding missense_variant MODERATE 80T>C Ile27Thr
M0104409 CBJLCLJG_00013 17845 6 Skin 0.26 protein_coding missense_variant MODERATE 59A>G Glu20Gly
M0104410 CBJLCLJG_00014 18554 5 Skin 0.22 protein_coding missense_variant MODERATE 427A>G Lys143Glu
M0104411 CBJLCLJG_00014 18812 5 Skin 0.22 protein_coding missense_variant MODERATE 169C>A Gln57Lys
M0104412 CBJLCLJG_00015 19064 5 Skin 0.22 protein_coding missense_variant MODERATE 1285G>A Val429Ile
M0104413 CBJLCLJG_00015 19066 5 Skin 0.22 protein_coding missense_variant MODERATE 1283C>T Ser428Leu
M0104414 CBJLCLJG_00016 20410 6 Skin 0.26 protein_coding missense_variant MODERATE 887A>G Lys296Arg
M0104415 CBJLCLJG_00016 20584 5 Skin 0.22 protein_coding missense_variant MODERATE 713A>C Asn238Thr
M0104416 CBJLCLJG_00016 20607 5 Skin 0.22 protein_coding synonymous_variant LOW 690G>A Gly230Gly
M0104417 CBJLCLJG_00016 20814 6 Skin 0.26 protein_coding synonymous_variant LOW 483T>C Gly161Gly
M0104418 CBJLCLJG_00016 20934 6 Skin 0.26 protein_coding synonymous_variant LOW 363G>A Gly121Gly
M0104419 CBJLCLJG_00016 20937 6 Skin 0.26 protein_coding synonymous_variant LOW 360C>T Tyr120Tyr
M0104420 CBJLCLJG_00016 21085 5 Skin 0.22 protein_coding missense_variant MODERATE 212C>T Ala71Val
M0104421 CBJLCLJG_00016 21260 6 Skin 0.26 protein_coding missense_variant MODERATE 37A>G Lys13Glu
M0104422 CBJLCLJG_00016 21264 5 Skin 0.22 protein_coding missense_variant MODERATE 33C>G Asn11Lys
M0104423 CBJLCLJG_00017 21790 5 Skin 0.22 protein_coding synonymous_variant LOW 513A>G Pro171Pro
M0104424 CBJLCLJG_00013 22398 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4495G>A None
M0104425 CBJLCLJG_00013 22438 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4535C>A None
M0104426 CBJLCLJG_00013 22461 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4558T>C None
M0104427 CBJLCLJG_00013 22464 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4561T>C None
M0104428 CBJLCLJG_00018 22870 5 Skin 0.22 protein_coding synonymous_variant LOW 402C>T Phe134Phe
M0104429 CBJLCLJG_00018 22979 4 Skin 0.17 protein_coding missense_variant MODERATE 511G>A Gly171Arg
M0104430 CBJLCLJG_00019 23101 4 Skin 0.17 protein_coding missense_variant MODERATE 49A>G Thr17Ala
M0104431 CBJLCLJG_00015 25240 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4892T>C None
M0104432 CBJLCLJG_00021 25729 3 Skin 0.13 protein_coding missense_variant MODERATE 314C>T Thr105Ile
M0104433 CBJLCLJG_00021 26181 5 Skin 0.22 protein_coding missense_variant MODERATE 766G>A Gly256Ser
M0104434 CBJLCLJG_00015 25299 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4951A>G None
M0104435 CBJLCLJG_00015 25313 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4965G>T None
M0104436 CBJLCLJG_00003 2892 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -7G>A None
M0104437 CBJLCLJG_00003 2970 6 Skin 0.26 protein_coding synonymous_variant LOW 72G>A Thr24Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term