Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C871
  Reference Plasmid   NZ_CP072223.1
  Reference Plasmid Size   98242
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0185446 IGJPAFDJ_00034 28142 43 Gut 0.17 protein_coding missense_variant MODERATE 638C>T Ala213Val
M0185447 IGJPAFDJ_00045 41148 3 Gut 0.01 protein_coding missense_variant MODERATE 975T>A Asn325Lys
M0185448 IGJPAFDJ_00017 11272 6 Gut 0.02 protein_coding missense_variant MODERATE 764G>A Gly255Asp
M0185449 IGJPAFDJ_00018 12780 4 Gut 0.02 protein_coding missense_variant MODERATE 443T>G Leu148Trp
M0185450 IGJPAFDJ_00035 30118 3 Gut 0.01 protein_coding missense_variant MODERATE 1809G>A Met603Ile
M0185451 IGJPAFDJ_00058 51345 7 Gut 0.03 protein_coding synonymous_variant LOW 42T>C Asn14Asn
M0185452 IGJPAFDJ_00067 58444 3 Gut 0.01 protein_coding missense_variant MODERATE 1151C>T Ala384Val
M0185453 IGJPAFDJ_00079 70200 5 Gut 0.02 protein_coding missense_variant MODERATE 1900G>A Val634Ile
M0185454 IGJPAFDJ_00075 65333 3 Gut 0.01 protein_coding missense_variant MODERATE 279T>G Asp93Glu
M0185455 IGJPAFDJ_00079 69968 3 Gut 0.01 protein_coding synonymous_variant LOW 1668T>C Ile556Ile
M0185456 IGJPAFDJ_00081 71755 3 Gut 0.01 protein_coding missense_variant MODERATE 931A>G Lys311Glu
M0185457 IGJPAFDJ_00020 18627 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -2408G>T None
M0185458 IGJPAFDJ_00022 17400 6 Gut 0.02 protein_coding synonymous_variant LOW 423T>G Thr141Thr
M0185459 IGJPAFDJ_00022 17592 3 Gut 0.01 protein_coding synonymous_variant LOW 615G>A Gly205Gly
M0185460 IGJPAFDJ_00022 17769 3 Gut 0.01 protein_coding synonymous_variant LOW 792A>C Arg264Arg
M0185461 IGJPAFDJ_00025 23146 17 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -1718T>C None
M0185462 IGJPAFDJ_00025 23201 15 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -1773T>C None
M0185463 IGJPAFDJ_00025 23228 13 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -1800C>A None
M0185464 IGJPAFDJ_00025 23244 13 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -1816C>T None
M0185465 IGJPAFDJ_00025 23309 15 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -1881A>C None
M0185466 IGJPAFDJ_00101 84991 9 Gut 0.03 protein_coding missense_variant MODERATE 704C>T Thr235Met
M0185467 IGJPAFDJ_00101 85065 9 Gut 0.03 protein_coding synonymous_variant LOW 630T>C Phe210Phe
M0185468 IGJPAFDJ_00101 85072 9 Gut 0.03 protein_coding missense_variant MODERATE 623C>T Thr208Ile
M0185469 IGJPAFDJ_00101 85074 10 Gut 0.04 protein_coding synonymous_variant LOW 621C>T Asp207Asp
M0185470 IGJPAFDJ_00101 85351 9 Gut 0.03 protein_coding missense_variant MODERATE 344C>T Ser115Leu
M0185471 IGJPAFDJ_00101 85368 9 Gut 0.03 protein_coding missense_variant MODERATE 327G>C Arg109Ser
M0185472 IGJPAFDJ_00101 85377 9 Gut 0.03 protein_coding synonymous_variant LOW 318G>A Gly106Gly
M0185473 IGJPAFDJ_00101 85396 9 Gut 0.03 protein_coding missense_variant MODERATE 299A>G Asp100Gly
M0185474 IGJPAFDJ_00101 85425 9 Gut 0.03 protein_coding synonymous_variant LOW 270A>G Gly90Gly
M0185475 IGJPAFDJ_00101 85575 9 Gut 0.03 protein_coding synonymous_variant LOW 120G>A Ala40Ala
M0185476 IGJPAFDJ_00102 85771 9 Gut 0.03 protein_coding missense_variant MODERATE 203C>T Ser68Leu
M0185477 IGJPAFDJ_00102 85912 10 Gut 0.04 protein_coding missense_variant MODERATE 62A>G His21Arg
M0185478 IGJPAFDJ_00097 85994 11 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -3111A>G None
M0185479 IGJPAFDJ_00103 86152 11 Gut 0.04 protein_coding synonymous_variant LOW 358A>C Arg120Arg
M0185480 IGJPAFDJ_00103 86404 9 Gut 0.03 protein_coding missense_variant MODERATE 106A>G Lys36Glu
M0185481 IGJPAFDJ_00103 86434 9 Gut 0.03 protein_coding missense_variant MODERATE 76A>T Ser26Cys
M0185482 IGJPAFDJ_00097 86514 9 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3631G>A None
M0185483 IGJPAFDJ_00097 86525 9 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3642C>A None
M0185484 IGJPAFDJ_00083 75641 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -1905C>T None
M0185485 IGJPAFDJ_00083 75643 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -1907T>C None
M0185486 IGJPAFDJ_00083 75670 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -1934T>C None
M0185487 IGJPAFDJ_00055 53000 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3863G>A None
M0185488 IGJPAFDJ_00065 56733 3 Gut 0.01 protein_coding synonymous_variant LOW 105A>G Ala35Ala
M0185489 IGJPAFDJ_00053 51250 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3416G>A None
M0185490 IGJPAFDJ_00081 71301 3 Gut 0.01 protein_coding synonymous_variant LOW 477T>G Arg159Arg
M0185491 IGJPAFDJ_00110 94534 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4699G>T None
M0185492 IGJPAFDJ_00110 94537 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4702T>C None
M0185493 IGJPAFDJ_00110 94565 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4730G>A None
M0185494 IGJPAFDJ_00110 94568 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4733C>G None
M0185495 IGJPAFDJ_00110 94569 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4734C>T None
M0185496 IGJPAFDJ_00110 94572 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4737A>C None
M0185497 IGJPAFDJ_00110 94575 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4740C>T None
M0185498 IGJPAFDJ_00110 94579 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4744T>G None
M0185499 IGJPAFDJ_00110 94605 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4770C>T None
M0185500 IGJPAFDJ_00110 94613 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4778C>G None
M0185501 IGJPAFDJ_00110 94616 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4781T>G None
M0185502 IGJPAFDJ_00099 84281 6 Gut 0.02 protein_coding synonymous_variant LOW 336A>G Glu112Glu
M0185503 IGJPAFDJ_00099 84284 6 Gut 0.02 protein_coding synonymous_variant LOW 333G>A Thr111Thr
M0185504 IGJPAFDJ_00099 84365 6 Gut 0.02 protein_coding synonymous_variant LOW 252C>T Ala84Ala
M0185505 IGJPAFDJ_00099 84494 7 Gut 0.03 protein_coding synonymous_variant LOW 123T>A Ile41Ile
M0185506 IGJPAFDJ_00099 84547 6 Gut 0.02 protein_coding missense_variant MODERATE 70C>T Pro24Ser
M0185507 IGJPAFDJ_00100 84766 7 Gut 0.03 protein_coding synonymous_variant LOW 174T>G Val58Val
M0185508 IGJPAFDJ_00100 84790 7 Gut 0.03 protein_coding synonymous_variant LOW 150G>A Gly50Gly
M0185509 IGJPAFDJ_00100 84840 7 Gut 0.03 protein_coding missense_variant MODERATE 100A>G Thr34Ala
M0185510 IGJPAFDJ_00100 84867 8 Gut 0.03 protein_coding missense_variant MODERATE 73T>C Trp25Arg
M0185511 IGJPAFDJ_00100 84887 7 Gut 0.03 protein_coding missense_variant MODERATE 53G>A Ser18Asn
M0185512 IGJPAFDJ_00100 84896 7 Gut 0.03 protein_coding missense_variant MODERATE 44C>T Ala15Val
M0185513 IGJPAFDJ_00100 84901 7 Gut 0.03 protein_coding synonymous_variant LOW 39C>T Val13Val
M0185514 IGJPAFDJ_00100 84933 7 Gut 0.03 protein_coding missense_variant MODERATE 7G>A Ala3Thr
M0185515 IGJPAFDJ_00019 13576 3 Gut 0.01 protein_coding missense_variant MODERATE 5A>G Lys2Arg
M0185516 IGJPAFDJ_00012 8058 4 Gut 0.02 protein_coding missense_variant MODERATE 47G>A Arg16Lys
M0185517 IGJPAFDJ_00009 8455 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -2195G>A None
M0185518 IGJPAFDJ_00060 53934 3 Gut 0.01 protein_coding synonymous_variant LOW 753C>T Ile251Ile
M0185519 IGJPAFDJ_00062 55684 4 Gut 0.02 protein_coding synonymous_variant LOW 225T>C Tyr75Tyr
M0185520 IGJPAFDJ_00064 56328 3 Gut 0.01 protein_coding synonymous_variant LOW 63T>C Phe21Phe
M0185521 IGJPAFDJ_00097 86842 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3959C>T None
M0185522 IGJPAFDJ_00097 86854 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3971G>A None
M0185523 IGJPAFDJ_00097 86863 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3980T>C None
M0185524 IGJPAFDJ_00097 86878 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3995A>T None
M0185525 IGJPAFDJ_00097 86909 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4026C>T None
M0185526 IGJPAFDJ_00097 86924 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4041G>A None
M0185527 IGJPAFDJ_00097 86960 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4077C>T None
M0185528 IGJPAFDJ_00097 87010 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4127G>T None
M0185529 IGJPAFDJ_00097 87014 6 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4131C>T None
M0185530 IGJPAFDJ_00097 87147 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4264A>G None
M0185531 IGJPAFDJ_00097 87155 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4272T>C None
M0185532 IGJPAFDJ_00118 95470 4 Gut 0.02 protein_coding synonymous_variant LOW 1041G>A Lys347Lys
M0185533 IGJPAFDJ_00116 93602 4 Gut 0.02 protein_coding missense_variant MODERATE 16A>G Thr6Ala
M0185534 IGJPAFDJ_00107 93650 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4980T>A None
M0185535 IGJPAFDJ_00107 93652 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4982A>T None
M0185536 IGJPAFDJ_00107 93653 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4983G>T None
M0185537 IGJPAFDJ_00107 93655 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4985C>A None
M0185538 IGJPAFDJ_00108 93701 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4734G>A None
M0185539 IGJPAFDJ_00117 93863 3 Gut 0.01 protein_coding synonymous_variant LOW 558T>A Val186Val
M0185540 IGJPAFDJ_00117 93865 3 Gut 0.01 protein_coding missense_variant MODERATE 556G>T Val186Phe
M0185541 IGJPAFDJ_00117 93868 3 Gut 0.01 protein_coding synonymous_variant LOW 553T>C Leu185Leu
M0185542 IGJPAFDJ_00117 93902 3 Gut 0.01 protein_coding synonymous_variant LOW 519A>G Ala173Ala
M0185543 IGJPAFDJ_00117 93914 3 Gut 0.01 protein_coding synonymous_variant LOW 507C>T Arg169Arg
M0185544 IGJPAFDJ_00117 93928 3 Gut 0.01 protein_coding missense_variant MODERATE 493A>G Ser165Gly
M0185545 IGJPAFDJ_00117 93944 3 Gut 0.01 protein_coding synonymous_variant LOW 477A>G Gly159Gly
M0185546 IGJPAFDJ_00117 93950 3 Gut 0.01 protein_coding synonymous_variant LOW 471A>G Pro157Pro
M0185547 IGJPAFDJ_00117 93953 3 Gut 0.01 protein_coding synonymous_variant LOW 468C>T His156His
M0185548 IGJPAFDJ_00117 93962 3 Gut 0.01 protein_coding synonymous_variant LOW 459A>G Val153Val
M0185549 IGJPAFDJ_00117 94043 3 Gut 0.01 protein_coding synonymous_variant LOW 378C>T Gly126Gly
M0185550 IGJPAFDJ_00117 94117 4 Gut 0.02 protein_coding missense_variant MODERATE 304G>A Ala102Thr
M0185551 IGJPAFDJ_00117 94133 4 Gut 0.02 protein_coding synonymous_variant LOW 288T>C Pro96Pro
M0185552 IGJPAFDJ_00117 94159 3 Gut 0.01 protein_coding missense_variant MODERATE 262A>G Asn88Asp
M0185553 IGJPAFDJ_00117 94253 5 Gut 0.02 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0185554 IGJPAFDJ_00117 94283 3 Gut 0.01 protein_coding synonymous_variant LOW 138A>G Gly46Gly
M0185555 IGJPAFDJ_00117 94289 3 Gut 0.01 protein_coding missense_variant MODERATE 132A>G Ile44Met
M0185556 IGJPAFDJ_00110 94718 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4883A>G None
M0185557 IGJPAFDJ_00110 94753 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4918A>G None
M0185558 IGJPAFDJ_00110 94777 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4942A>G None
M0185559 IGJPAFDJ_00118 96484 3 Gut 0.01 protein_coding synonymous_variant LOW 27T>C Pro9Pro
M0185560 IGJPAFDJ_00118 96493 3 Gut 0.01 protein_coding synonymous_variant LOW 18T>C Ile6Ile
M0185561 IGJPAFDJ_00115 96619 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3761A>G None
M0185562 IGJPAFDJ_00101 90485 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4791T>C None
M0185563 IGJPAFDJ_00083 74658 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -922T>G None
M0185564 IGJPAFDJ_00083 74681 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -945T>G None
M0185565 IGJPAFDJ_00083 74975 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -1239G>A None
M0185566 IGJPAFDJ_00083 74983 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -1247C>T None
M0185567 IGJPAFDJ_00083 75020 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -1284C>T None
M0185568 IGJPAFDJ_00016 10768 3 Gut 0.01 protein_coding missense_variant MODERATE 284G>A Ser95Asn
M0185569 IGJPAFDJ_00016 10775 3 Gut 0.01 protein_coding missense_variant MODERATE 277A>G Asn93Asp
M0185570 IGJPAFDJ_00016 10776 4 Gut 0.02 protein_coding missense_variant MODERATE 276A>C Lys92Asn
M0185571 IGJPAFDJ_00016 10778 4 Gut 0.02 protein_coding missense_variant MODERATE 274A>G Lys92Glu
M0185572 IGJPAFDJ_00016 10792 3 Gut 0.01 protein_coding missense_variant MODERATE 260G>A Gly87Asp
M0185573 IGJPAFDJ_00016 10797 4 Gut 0.02 protein_coding missense_variant MODERATE 255T>A Asn85Lys
M0185574 IGJPAFDJ_00016 10809 3 Gut 0.01 protein_coding missense_variant MODERATE 243T>G Asn81Lys
M0185575 IGJPAFDJ_00016 10830 4 Gut 0.02 protein_coding missense_variant MODERATE 222T>A Asp74Glu
M0185576 IGJPAFDJ_00016 10839 3 Gut 0.01 protein_coding synonymous_variant LOW 213A>C Val71Val
M0185577 IGJPAFDJ_00016 10897 3 Gut 0.01 protein_coding missense_variant MODERATE 155A>G Asn52Ser
M0185578 IGJPAFDJ_00016 10900 3 Gut 0.01 protein_coding missense_variant MODERATE 152A>C Lys51Thr
M0185579 IGJPAFDJ_00016 10910 4 Gut 0.02 protein_coding missense_variant MODERATE 142A>T Thr48Ser
M0185580 IGJPAFDJ_00016 10912 4 Gut 0.02 protein_coding missense_variant MODERATE 140A>C Asn47Thr
M0185581 IGJPAFDJ_00016 10913 4 Gut 0.02 protein_coding missense_variant MODERATE 139A>C Asn47His
M0185582 IGJPAFDJ_00016 11028 4 Gut 0.02 protein_coding synonymous_variant LOW 24T>A Ala8Ala
M0185583 IGJPAFDJ_00009 11084 5 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4824G>A None
M0185584 IGJPAFDJ_00017 11199 6 Gut 0.02 protein_coding synonymous_variant LOW 837T>A Val279Val
M0185585 IGJPAFDJ_00017 11248 6 Gut 0.02 protein_coding missense_variant MODERATE 788T>C Val263Ala
M0185586 IGJPAFDJ_00017 11307 4 Gut 0.02 protein_coding synonymous_variant LOW 729A>C Ser243Ser
M0185587 IGJPAFDJ_00017 11327 6 Gut 0.02 protein_coding synonymous_variant LOW 709T>C Leu237Leu
M0185588 IGJPAFDJ_00101 90423 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4729A>G None
M0185589 IGJPAFDJ_00101 90428 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4734T>C None
M0185590 IGJPAFDJ_00101 90462 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4768G>A None
M0185591 IGJPAFDJ_00101 90489 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4795A>G None
M0185592 IGJPAFDJ_00112 90663 3 Gut 0.01 protein_coding synonymous_variant LOW 153T>C Asn51Asn
M0185593 IGJPAFDJ_00112 90852 3 Gut 0.01 protein_coding synonymous_variant LOW 342T>C Gly114Gly
M0185594 IGJPAFDJ_00112 90960 3 Gut 0.01 protein_coding synonymous_variant LOW 450A>G Val150Val
M0185595 IGJPAFDJ_00112 90990 3 Gut 0.01 protein_coding synonymous_variant LOW 480A>C Ile160Ile
M0185596 IGJPAFDJ_00112 91063 3 Gut 0.01 protein_coding missense_variant MODERATE 553G>A Val185Met
M0185597 IGJPAFDJ_00112 91065 3 Gut 0.01 protein_coding synonymous_variant LOW 555G>A Val185Val
M0185598 IGJPAFDJ_00107 91729 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3059G>T None
M0185599 IGJPAFDJ_00114 92218 3 Gut 0.01 protein_coding synonymous_variant LOW 468A>G Gln156Gln
M0185600 IGJPAFDJ_00115 92592 3 Gut 0.01 protein_coding synonymous_variant LOW 267G>T Val89Val
M0185601 IGJPAFDJ_00115 92593 3 Gut 0.01 protein_coding missense_variant MODERATE 266T>G Val89Gly
M0185602 IGJPAFDJ_00115 92837 3 Gut 0.01 protein_coding missense_variant MODERATE 22A>G Asn8Asp
M0185603 IGJPAFDJ_00115 92838 3 Gut 0.01 protein_coding synonymous_variant LOW 21T>G Ala7Ala
M0185604 IGJPAFDJ_00107 93621 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4951C>T None
M0185605 IGJPAFDJ_00050 46142 3 Gut 0.01 protein_coding missense_variant MODERATE 1144G>A Val382Ile
M0185606 IGJPAFDJ_00053 52721 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4887G>A None
M0185607 IGJPAFDJ_00060 53607 3 Gut 0.01 protein_coding synonymous_variant LOW 426C>T Asp142Asp
M0185608 IGJPAFDJ_00060 53626 3 Gut 0.01 protein_coding missense_variant MODERATE 445A>G Asn149Asp
M0185609 IGJPAFDJ_00060 53781 3 Gut 0.01 protein_coding synonymous_variant LOW 600G>A Leu200Leu
M0185610 IGJPAFDJ_00060 53797 3 Gut 0.01 protein_coding synonymous_variant LOW 616C>T Leu206Leu
M0185611 IGJPAFDJ_00061 54682 3 Gut 0.01 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0185612 IGJPAFDJ_00061 54703 3 Gut 0.01 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0185613 IGJPAFDJ_00097 86831 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3948C>T None
M0185614 IGJPAFDJ_00097 87013 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4130C>T None
M0185615 IGJPAFDJ_00101 85473 3 Gut 0.01 protein_coding missense_variant MODERATE 222T>G Asp74Glu
M0185616 IGJPAFDJ_00113 91601 3 Gut 0.01 protein_coding synonymous_variant LOW 222G>A Val74Val
M0185617 IGJPAFDJ_00113 91614 3 Gut 0.01 protein_coding synonymous_variant LOW 235C>T Leu79Leu
M0185618 IGJPAFDJ_00113 91622 3 Gut 0.01 protein_coding synonymous_variant LOW 243G>A Arg81Arg
M0185619 IGJPAFDJ_00113 91634 3 Gut 0.01 protein_coding synonymous_variant LOW 255A>T Ala85Ala
M0185620 IGJPAFDJ_00017 16304 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4269T>C None
M0185621 IGJPAFDJ_00009 8620 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -2360A>G None
M0185622 IGJPAFDJ_00009 8659 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -2399G>T None
M0185623 IGJPAFDJ_00017 11455 4 Gut 0.02 protein_coding missense_variant MODERATE 581C>G Ala194Gly
M0185624 IGJPAFDJ_00017 11574 4 Gut 0.02 protein_coding synonymous_variant LOW 462G>A Leu154Leu
M0185625 IGJPAFDJ_00017 11623 4 Gut 0.02 protein_coding missense_variant MODERATE 413A>G Glu138Gly
M0185626 IGJPAFDJ_00017 11624 4 Gut 0.02 protein_coding missense_variant MODERATE 412G>A Glu138Lys
M0185627 IGJPAFDJ_00017 11649 4 Gut 0.02 protein_coding synonymous_variant LOW 387T>C Pro129Pro
M0185628 IGJPAFDJ_00017 11686 3 Gut 0.01 protein_coding missense_variant MODERATE 350A>G Gln117Arg
M0185629 IGJPAFDJ_00017 11688 4 Gut 0.02 protein_coding synonymous_variant LOW 348G>T Val116Val
M0185630 IGJPAFDJ_00017 11793 4 Gut 0.02 protein_coding synonymous_variant LOW 243T>C Leu81Leu
M0185631 IGJPAFDJ_00018 12809 3 Gut 0.01 protein_coding synonymous_variant LOW 414C>A Val138Val
M0185632 IGJPAFDJ_00019 13596 3 Gut 0.01 protein_coding missense_variant MODERATE 25T>A Ser9Thr
M0185633 IGJPAFDJ_00019 13673 3 Gut 0.01 protein_coding synonymous_variant LOW 102A>T Arg34Arg
M0185634 IGJPAFDJ_00019 13702 4 Gut 0.02 protein_coding missense_variant MODERATE 131T>C Val44Ala
M0185635 IGJPAFDJ_00019 13883 3 Gut 0.01 protein_coding synonymous_variant LOW 312A>G Glu104Glu
M0185636 IGJPAFDJ_00019 14097 3 Gut 0.01 protein_coding missense_variant MODERATE 526A>G Ile176Val
M0185637 IGJPAFDJ_00019 14612 4 Gut 0.02 protein_coding synonymous_variant LOW 1041A>G Glu347Glu
M0185638 IGJPAFDJ_00016 14675 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3624T>G None
M0185639 IGJPAFDJ_00081 71139 3 Gut 0.01 protein_coding synonymous_variant LOW 315C>T Pro105Pro
M0185640 IGJPAFDJ_00092 84037 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4008G>A None
M0185641 IGJPAFDJ_00092 84070 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4041A>G None
M0185642 IGJPAFDJ_00092 84194 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4165A>G None
M0185643 IGJPAFDJ_00092 84219 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4190T>C None
M0185644 IGJPAFDJ_00092 84224 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4195T>C None
M0185645 IGJPAFDJ_00092 84226 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4197G>A None
M0185646 IGJPAFDJ_00092 83839 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -3810C>T None
M0185647 IGJPAFDJ_00092 83854 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3825T>A None
M0185648 IGJPAFDJ_00092 83855 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3826T>A None
M0185649 IGJPAFDJ_00092 83864 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3835T>C None
M0185650 IGJPAFDJ_00092 83867 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -3838G>A None
M0185651 IGJPAFDJ_00092 84043 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4014T>C None
M0185652 IGJPAFDJ_00092 84085 4 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4056C>T None
M0185653 IGJPAFDJ_00009 11079 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4819A>G None
M0185654 IGJPAFDJ_00009 11082 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4822T>A None
M0185655 IGJPAFDJ_00091 83603 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4930C>T None
M0185656 IGJPAFDJ_00091 83606 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4933A>T None
M0185657 IGJPAFDJ_00056 55377 3 Gut 0.01 protein_coding upstream_gene_variant MODIFIER -4812G>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
IGJPAFDJ_00037 PHI:3281 AS87_04050 71.4 3e-136 1 325 1.0000 1.0000 birds fibrinous serositis; caseous salpingitis; vegetative disorder lipopolysaccharide biosynthesis and pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
IGJPAFDJ_00042 QUT83193.1|GT4 100 0 1 444 1 1
IGJPAFDJ_00043 QRP91614.1|GT4 100 4.79e-292 1 391 1 1
IGJPAFDJ_00044 BBK89584.1|GT2 100 6.37e-226 1 300 1 1
IGJPAFDJ_00045 QRP91616.1|GT4 100 5.41e-274 1 366 1 1
IGJPAFDJ_00047 QUT55894.1|GT2 100 1.57e-228 1 304 1 1
IGJPAFDJ_00049 QUT64421.1|GT4 100 1.11e-279 1 378 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term