Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C885
  Reference Plasmid   NZ_CP072249.1
  Reference Plasmid Size   43921
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0187380 EHFCEAJD_00031 25124 8 Gut 0.18 protein_coding missense_variant MODERATE 283A>G Thr95Ala
M0187381 EHFCEAJD_00025 25907 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4035T>C None
M0187382 EHFCEAJD_00025 26317 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4445A>G None
M0187383 EHFCEAJD_00036 29061 5 Gut 0.11 protein_coding synonymous_variant LOW 126C>T Tyr42Tyr
M0187384 EHFCEAJD_00037 29598 3 Gut 0.07 protein_coding synonymous_variant LOW 700C>T Leu234Leu
M0187385 EHFCEAJD_00037 29797 10 Gut 0.22 protein_coding synonymous_variant LOW 501A>G Leu167Leu
M0187386 EHFCEAJD_00037 30235 3 Gut 0.07 protein_coding synonymous_variant LOW 63T>C Ile21Ile
M0187387 EHFCEAJD_00037 30256 3 Gut 0.07 protein_coding synonymous_variant LOW 42G>T Pro14Pro
M0187388 EHFCEAJD_00037 30274 3 Gut 0.07 protein_coding synonymous_variant LOW 24G>A Lys8Lys
M0187389 EHFCEAJD_00037 30285 3 Gut 0.07 protein_coding missense_variant MODERATE 13G>A Asp5Asn
M0187390 EHFCEAJD_00038 30318 4 Gut 0.09 protein_coding missense_variant MODERATE 415A>C Asn139His
M0187391 EHFCEAJD_00038 30327 7 Gut 0.16 protein_coding missense_variant MODERATE 406A>G Asn136Asp
M0187392 EHFCEAJD_00038 30339 3 Gut 0.07 protein_coding missense_variant MODERATE 394A>G Ile132Val
M0187393 EHFCEAJD_00038 30403 3 Gut 0.07 protein_coding synonymous_variant LOW 330G>A Val110Val
M0187394 EHFCEAJD_00038 30411 3 Gut 0.07 protein_coding synonymous_variant LOW 322T>C Leu108Leu
M0187395 EHFCEAJD_00038 30415 3 Gut 0.07 protein_coding missense_variant MODERATE 318C>G Asp106Glu
M0187396 EHFCEAJD_00038 30420 3 Gut 0.07 protein_coding missense_variant MODERATE 313C>G His105Asp
M0187397 EHFCEAJD_00038 30431 3 Gut 0.07 protein_coding missense_variant MODERATE 302A>G Gln101Arg
M0187398 EHFCEAJD_00038 30446 3 Gut 0.07 protein_coding missense_variant MODERATE 287C>G Thr96Ser
M0187399 EHFCEAJD_00038 30468 3 Gut 0.07 protein_coding missense_variant MODERATE 265G>A Val89Ile
M0187400 EHFCEAJD_00038 30601 5 Gut 0.11 protein_coding synonymous_variant LOW 132G>A Leu44Leu
M0187401 EHFCEAJD_00038 30678 3 Gut 0.07 protein_coding missense_variant MODERATE 55G>T Ala19Ser
M0187402 EHFCEAJD_00038 30692 3 Gut 0.07 protein_coding missense_variant MODERATE 41G>C Ser14Thr
M0187403 EHFCEAJD_00039 30735 3 Gut 0.07 protein_coding synonymous_variant LOW 612C>T Phe204Phe
M0187404 EHFCEAJD_00039 30759 3 Gut 0.07 protein_coding synonymous_variant LOW 588A>T Leu196Leu
M0187405 EHFCEAJD_00039 30771 11 Gut 0.24 protein_coding synonymous_variant LOW 576A>C Leu192Leu
M0187406 EHFCEAJD_00039 30822 10 Gut 0.22 protein_coding synonymous_variant LOW 525T>C Arg175Arg
M0187407 EHFCEAJD_00039 30867 3 Gut 0.07 protein_coding synonymous_variant LOW 480A>T Leu160Leu
M0187408 EHFCEAJD_00039 30876 5 Gut 0.11 protein_coding synonymous_variant LOW 471C>T Thr157Thr
M0187409 EHFCEAJD_00039 30909 3 Gut 0.07 protein_coding synonymous_variant LOW 438G>A Glu146Glu
M0187410 EHFCEAJD_00039 30924 5 Gut 0.11 protein_coding synonymous_variant LOW 423C>T Asn141Asn
M0187411 EHFCEAJD_00039 30933 5 Gut 0.11 protein_coding synonymous_variant LOW 414G>A Val138Val
M0187412 EHFCEAJD_00039 30935 5 Gut 0.11 protein_coding missense_variant MODERATE 412G>A Val138Met
M0187413 EHFCEAJD_00039 30984 5 Gut 0.11 protein_coding synonymous_variant LOW 363C>T Thr121Thr
M0187414 EHFCEAJD_00039 31010 3 Gut 0.07 protein_coding synonymous_variant LOW 337T>C Leu113Leu
M0187415 EHFCEAJD_00039 31077 3 Gut 0.07 protein_coding synonymous_variant LOW 270T>C Phe90Phe
M0187416 EHFCEAJD_00039 31092 3 Gut 0.07 protein_coding synonymous_variant LOW 255A>C Pro85Pro
M0187417 EHFCEAJD_00039 31097 3 Gut 0.07 protein_coding synonymous_variant LOW 250T>C Leu84Leu
M0187418 EHFCEAJD_00039 31134 5 Gut 0.11 protein_coding synonymous_variant LOW 213G>A Lys71Lys
M0187419 EHFCEAJD_00039 31143 5 Gut 0.11 protein_coding synonymous_variant LOW 204C>A Val68Val
M0187420 EHFCEAJD_00039 31149 3 Gut 0.07 protein_coding synonymous_variant LOW 198G>A Leu66Leu
M0187421 EHFCEAJD_00039 31151 3 Gut 0.07 protein_coding synonymous_variant LOW 196T>C Leu66Leu
M0187422 EHFCEAJD_00039 31173 3 Gut 0.07 protein_coding synonymous_variant LOW 174A>G Lys58Lys
M0187423 EHFCEAJD_00039 31176 8 Gut 0.18 protein_coding synonymous_variant LOW 171A>G Val57Val
M0187424 EHFCEAJD_00039 31200 3 Gut 0.07 protein_coding synonymous_variant LOW 147G>A Leu49Leu
M0187425 EHFCEAJD_00039 31255 3 Gut 0.07 protein_coding missense_variant MODERATE 92T>C Val31Ala
M0187426 EHFCEAJD_00039 31260 3 Gut 0.07 protein_coding synonymous_variant LOW 87T>C Gly29Gly
M0187427 EHFCEAJD_00039 31278 3 Gut 0.07 protein_coding synonymous_variant LOW 69T>A Thr23Thr
M0187428 EHFCEAJD_00039 31313 5 Gut 0.11 protein_coding synonymous_variant LOW 34T>C Leu12Leu
M0187429 EHFCEAJD_00033 31347 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4181C>T None
M0187430 EHFCEAJD_00033 31350 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4184A>T None
M0187431 EHFCEAJD_00033 31351 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4185T>C None
M0187432 EHFCEAJD_00033 31364 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4198T>A None
M0187433 EHFCEAJD_00040 31391 3 Gut 0.07 protein_coding synonymous_variant LOW 1011T>C Ser337Ser
M0187434 EHFCEAJD_00040 31406 3 Gut 0.07 protein_coding synonymous_variant LOW 996T>C Ala332Ala
M0187435 EHFCEAJD_00040 31409 3 Gut 0.07 protein_coding synonymous_variant LOW 993G>A Pro331Pro
M0187436 EHFCEAJD_00040 31423 3 Gut 0.07 protein_coding missense_variant MODERATE 979G>A Ala327Thr
M0187437 EHFCEAJD_00040 31433 3 Gut 0.07 protein_coding synonymous_variant LOW 969C>T Ile323Ile
M0187438 EHFCEAJD_00040 31454 3 Gut 0.07 protein_coding synonymous_variant LOW 948C>G Gly316Gly
M0187439 EHFCEAJD_00040 31457 3 Gut 0.07 protein_coding synonymous_variant LOW 945A>G Gly315Gly
M0187440 EHFCEAJD_00040 31462 3 Gut 0.07 protein_coding missense_variant MODERATE 940G>A Val314Ile
M0187441 EHFCEAJD_00040 31463 3 Gut 0.07 protein_coding synonymous_variant LOW 939A>T Ala313Ala
M0187442 EHFCEAJD_00040 31469 3 Gut 0.07 protein_coding synonymous_variant LOW 933G>A Gly311Gly
M0187443 EHFCEAJD_00040 31523 3 Gut 0.07 protein_coding synonymous_variant LOW 879C>T Ala293Ala
M0187444 EHFCEAJD_00040 31559 3 Gut 0.07 protein_coding synonymous_variant LOW 843T>C Asn281Asn
M0187445 EHFCEAJD_00040 31592 3 Gut 0.07 protein_coding synonymous_variant LOW 810C>T Val270Val
M0187446 EHFCEAJD_00041 32484 3 Gut 0.07 protein_coding synonymous_variant LOW 567C>T Ala189Ala
M0187447 EHFCEAJD_00041 32490 3 Gut 0.07 protein_coding synonymous_variant LOW 561G>A Arg187Arg
M0187448 EHFCEAJD_00041 32493 6 Gut 0.13 protein_coding synonymous_variant LOW 558A>G Lys186Lys
M0187449 EHFCEAJD_00041 32532 3 Gut 0.07 protein_coding synonymous_variant LOW 519A>T Ile173Ile
M0187450 EHFCEAJD_00041 32577 8 Gut 0.18 protein_coding synonymous_variant LOW 474T>C His158His
M0187451 EHFCEAJD_00041 32649 5 Gut 0.11 protein_coding synonymous_variant LOW 402T>C Arg134Arg
M0187452 EHFCEAJD_00041 32706 3 Gut 0.07 protein_coding synonymous_variant LOW 345A>G Glu115Glu
M0187453 EHFCEAJD_00041 32952 11 Gut 0.24 protein_coding synonymous_variant LOW 99G>A Val33Val
M0187454 EHFCEAJD_00041 32955 3 Gut 0.07 protein_coding synonymous_variant LOW 96C>T Ser32Ser
M0187455 EHFCEAJD_00041 32979 3 Gut 0.07 protein_coding synonymous_variant LOW 72T>A Pro24Pro
M0187456 EHFCEAJD_00041 32995 11 Gut 0.24 protein_coding missense_variant MODERATE 56C>T Thr19Ile
M0187457 EHFCEAJD_00041 33006 3 Gut 0.07 protein_coding synonymous_variant LOW 45T>A Gly15Gly
M0187458 EHFCEAJD_00042 33334 11 Gut 0.24 protein_coding synonymous_variant LOW 393A>T Val131Val
M0187459 EHFCEAJD_00042 33439 3 Gut 0.07 protein_coding synonymous_variant LOW 288T>A Thr96Thr
M0187460 EHFCEAJD_00042 33442 8 Gut 0.18 protein_coding synonymous_variant LOW 285C>T Cys95Cys
M0187461 EHFCEAJD_00043 33742 3 Gut 0.07 protein_coding missense_variant MODERATE 2836C>A Arg946Ser
M0187462 EHFCEAJD_00043 34141 3 Gut 0.07 protein_coding synonymous_variant LOW 2437C>T Leu813Leu
M0187463 EHFCEAJD_00043 34628 3 Gut 0.07 protein_coding synonymous_variant LOW 1950C>T Ile650Ile
M0187464 EHFCEAJD_00043 34793 3 Gut 0.07 protein_coding synonymous_variant LOW 1785C>T Leu595Leu
M0187465 EHFCEAJD_00043 35381 3 Gut 0.07 protein_coding synonymous_variant LOW 1197G>A Gly399Gly
M0187466 EHFCEAJD_00043 35420 10 Gut 0.22 protein_coding synonymous_variant LOW 1158A>T Thr386Thr
M0187467 EHFCEAJD_00043 35429 4 Gut 0.09 protein_coding synonymous_variant LOW 1149T>C Thr383Thr
M0187468 EHFCEAJD_00043 35471 10 Gut 0.22 protein_coding synonymous_variant LOW 1107C>T Phe369Phe
M0187469 EHFCEAJD_00043 35474 6 Gut 0.13 protein_coding synonymous_variant LOW 1104G>A Leu368Leu
M0187470 EHFCEAJD_00043 35669 11 Gut 0.24 protein_coding synonymous_variant LOW 909A>C Ile303Ile
M0187471 EHFCEAJD_00043 35866 11 Gut 0.24 protein_coding missense_variant MODERATE 712G>A Gly238Ser
M0187472 EHFCEAJD_00042 38563 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4837C>G None
M0187473 EHFCEAJD_00042 38577 13 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -4851C>T None
M0187474 EHFCEAJD_00048 39013 3 Gut 0.07 protein_coding synonymous_variant LOW 291T>C Tyr97Tyr
M0187475 EHFCEAJD_00049 39736 3 Gut 0.07 protein_coding synonymous_variant LOW 219C>T Asn73Asn
M0187476 EHFCEAJD_00050 40043 3 Gut 0.07 protein_coding missense_variant MODERATE 423C>G Ile141Met
M0187477 EHFCEAJD_00050 40064 4 Gut 0.09 protein_coding synonymous_variant LOW 402G>C Arg134Arg
M0187478 EHFCEAJD_00050 40070 4 Gut 0.09 protein_coding synonymous_variant LOW 396G>A Gln132Gln
M0187479 EHFCEAJD_00050 40162 3 Gut 0.07 protein_coding missense_variant MODERATE 304T>A Cys102Ser
M0187480 EHFCEAJD_00025 26409 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4537G>A None
M0187481 EHFCEAJD_00025 26461 4 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4589G>A None
M0187482 EHFCEAJD_00025 26492 5 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4620G>A None
M0187483 EHFCEAJD_00025 26521 3 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4649G>A None
M0187484 EHFCEAJD_00033 26576 4 Gut 0.09 protein_coding synonymous_variant LOW 591A>G Gly197Gly
M0187485 EHFCEAJD_00033 26621 4 Gut 0.09 protein_coding synonymous_variant LOW 546A>G Gly182Gly
M0187486 EHFCEAJD_00033 26624 3 Gut 0.07 protein_coding synonymous_variant LOW 543T>C Asp181Asp
M0187487 EHFCEAJD_00033 26651 3 Gut 0.07 protein_coding synonymous_variant LOW 516T>C Gly172Gly
M0187488 EHFCEAJD_00033 26672 3 Gut 0.07 protein_coding synonymous_variant LOW 495A>G Gly165Gly
M0187489 EHFCEAJD_00033 26735 3 Gut 0.07 protein_coding synonymous_variant LOW 432T>A Thr144Thr
M0187490 EHFCEAJD_00033 26775 8 Gut 0.18 protein_coding missense_variant MODERATE 392G>C Ser131Thr
M0187491 EHFCEAJD_00033 26791 3 Gut 0.07 protein_coding synonymous_variant LOW 376T>C Leu126Leu
M0187492 EHFCEAJD_00033 26794 3 Gut 0.07 protein_coding missense_variant MODERATE 373G>A Asp125Asn
M0187493 EHFCEAJD_00033 26848 5 Gut 0.11 protein_coding synonymous_variant LOW 319C>T Leu107Leu
M0187494 EHFCEAJD_00033 26885 3 Gut 0.07 protein_coding synonymous_variant LOW 282A>G Gly94Gly
M0187495 EHFCEAJD_00033 26897 3 Gut 0.07 protein_coding synonymous_variant LOW 270A>G Lys90Lys
M0187496 EHFCEAJD_00033 26984 9 Gut 0.20 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0187497 EHFCEAJD_00033 26987 4 Gut 0.09 protein_coding synonymous_variant LOW 180A>G Lys60Lys
M0187498 EHFCEAJD_00033 27035 4 Gut 0.09 protein_coding synonymous_variant LOW 132T>C Ser44Ser
M0187499 EHFCEAJD_00033 27130 5 Gut 0.11 protein_coding missense_variant MODERATE 37G>A Val13Ile
M0187500 EHFCEAJD_00034 27430 5 Gut 0.11 protein_coding synonymous_variant LOW 399A>G Ala133Ala
M0187501 EHFCEAJD_00034 27433 5 Gut 0.11 protein_coding synonymous_variant LOW 396C>T Tyr132Tyr
M0187502 EHFCEAJD_00034 27469 4 Gut 0.09 protein_coding synonymous_variant LOW 360T>C Ser120Ser
M0187503 EHFCEAJD_00034 27475 5 Gut 0.11 protein_coding synonymous_variant LOW 354A>G Lys118Lys
M0187504 EHFCEAJD_00034 27565 5 Gut 0.11 protein_coding synonymous_variant LOW 264T>C Asp88Asp
M0187505 EHFCEAJD_00034 27627 5 Gut 0.11 protein_coding missense_variant MODERATE 202G>A Asp68Asn
M0187506 EHFCEAJD_00034 27628 7 Gut 0.16 protein_coding synonymous_variant LOW 201T>A Pro67Pro
M0187507 EHFCEAJD_00034 27680 5 Gut 0.11 protein_coding missense_variant MODERATE 149A>G Asn50Ser
M0187508 EHFCEAJD_00034 27694 5 Gut 0.11 protein_coding synonymous_variant LOW 135A>G Ser45Ser
M0187509 EHFCEAJD_00035 27834 5 Gut 0.11 protein_coding missense_variant MODERATE 501T>A Asn167Lys
M0187510 EHFCEAJD_00035 27897 7 Gut 0.16 protein_coding synonymous_variant LOW 438C>A Val146Val
M0187511 EHFCEAJD_00035 28022 4 Gut 0.09 protein_coding synonymous_variant LOW 313C>A Arg105Arg
M0187512 EHFCEAJD_00036 28446 4 Gut 0.09 protein_coding synonymous_variant LOW 741T>C Val247Val
M0187513 EHFCEAJD_00036 28461 4 Gut 0.09 protein_coding synonymous_variant LOW 726C>T Phe242Phe
M0187514 EHFCEAJD_00036 28479 4 Gut 0.09 protein_coding synonymous_variant LOW 708C>A Val236Val
M0187515 EHFCEAJD_00036 28491 4 Gut 0.09 protein_coding synonymous_variant LOW 696A>G Arg232Arg
M0187516 EHFCEAJD_00036 28497 4 Gut 0.09 protein_coding synonymous_variant LOW 690C>T Asn230Asn
M0187517 EHFCEAJD_00036 28500 4 Gut 0.09 protein_coding synonymous_variant LOW 687G>A Lys229Lys
M0187518 EHFCEAJD_00036 28590 4 Gut 0.09 protein_coding synonymous_variant LOW 597A>C Ile199Ile
M0187519 EHFCEAJD_00036 28596 4 Gut 0.09 protein_coding synonymous_variant LOW 591C>T Phe197Phe
M0187520 EHFCEAJD_00036 28668 4 Gut 0.09 protein_coding synonymous_variant LOW 519T>C Asp173Asp
M0187521 EHFCEAJD_00036 28692 4 Gut 0.09 protein_coding synonymous_variant LOW 495A>G Val165Val
M0187522 EHFCEAJD_00036 28716 4 Gut 0.09 protein_coding synonymous_variant LOW 471T>C Ser157Ser
M0187523 EHFCEAJD_00036 28743 4 Gut 0.09 protein_coding synonymous_variant LOW 444A>C Ser148Ser
M0187524 EHFCEAJD_00036 28744 4 Gut 0.09 protein_coding stop_gained HIGH 443C>G Ser148*
M0187525 EHFCEAJD_00036 28745 4 Gut 0.09 protein_coding missense_variant MODERATE 442T>A Ser148Thr
M0187526 EHFCEAJD_00036 28746 4 Gut 0.09 protein_coding synonymous_variant LOW 441T>C Ile147Ile
M0187527 EHFCEAJD_00036 28947 4 Gut 0.09 protein_coding synonymous_variant LOW 240G>A Lys80Lys
M0187528 EHFCEAJD_00037 29230 4 Gut 0.09 protein_coding synonymous_variant LOW 1068C>T Asn356Asn
M0187529 EHFCEAJD_00037 29455 4 Gut 0.09 protein_coding synonymous_variant LOW 843T>C Ser281Ser
M0187530 EHFCEAJD_00037 29477 4 Gut 0.09 protein_coding missense_variant MODERATE 821G>A Arg274Lys
M0187531 EHFCEAJD_00037 29521 4 Gut 0.09 protein_coding synonymous_variant LOW 777T>C Ala259Ala
M0187532 EHFCEAJD_00037 29637 4 Gut 0.09 protein_coding synonymous_variant LOW 661T>C Leu221Leu
M0187533 EHFCEAJD_00037 29761 4 Gut 0.09 protein_coding synonymous_variant LOW 537A>G Gln179Gln
M0187534 EHFCEAJD_00037 29872 4 Gut 0.09 protein_coding synonymous_variant LOW 426G>A Arg142Arg
M0187535 EHFCEAJD_00038 30589 4 Gut 0.09 protein_coding synonymous_variant LOW 144T>C Asp48Asp
M0187536 EHFCEAJD_00040 32000 3 Gut 0.07 protein_coding synonymous_variant LOW 402T>C Asn134Asn
M0187537 EHFCEAJD_00040 32006 3 Gut 0.07 protein_coding synonymous_variant LOW 396C>A Ala132Ala
M0187538 EHFCEAJD_00040 32018 3 Gut 0.07 protein_coding synonymous_variant LOW 384A>G Glu128Glu
M0187539 EHFCEAJD_00040 32267 3 Gut 0.07 protein_coding synonymous_variant LOW 135A>G Val45Val
M0187540 EHFCEAJD_00040 32281 3 Gut 0.07 protein_coding synonymous_variant LOW 121T>C Leu41Leu
M0187541 EHFCEAJD_00040 32282 5 Gut 0.11 protein_coding synonymous_variant LOW 120G>A Leu40Leu
M0187542 EHFCEAJD_00040 32300 3 Gut 0.07 protein_coding synonymous_variant LOW 102G>A Leu34Leu
M0187543 EHFCEAJD_00040 32336 3 Gut 0.07 protein_coding synonymous_variant LOW 66T>C Val22Val
M0187544 EHFCEAJD_00041 32511 3 Gut 0.07 protein_coding synonymous_variant LOW 540T>C His180His
M0187545 EHFCEAJD_00042 33130 4 Gut 0.09 protein_coding synonymous_variant LOW 597G>A Gly199Gly
M0187546 EHFCEAJD_00042 33173 4 Gut 0.09 protein_coding missense_variant MODERATE 554A>G Lys185Arg
M0187547 EHFCEAJD_00042 33178 4 Gut 0.09 protein_coding synonymous_variant LOW 549G>A Gln183Gln
M0187548 EHFCEAJD_00042 33238 4 Gut 0.09 protein_coding synonymous_variant LOW 489T>A Leu163Leu
M0187549 EHFCEAJD_00042 33418 3 Gut 0.07 protein_coding synonymous_variant LOW 309T>C Gly103Gly
M0187550 EHFCEAJD_00042 33550 4 Gut 0.09 protein_coding synonymous_variant LOW 177A>G Lys59Lys
M0187551 EHFCEAJD_00043 35906 7 Gut 0.16 protein_coding synonymous_variant LOW 672G>A Arg224Arg
M0187552 EHFCEAJD_00043 35944 7 Gut 0.16 protein_coding missense_variant MODERATE 634G>A Val212Ile
M0187553 EHFCEAJD_00043 36137 5 Gut 0.11 protein_coding synonymous_variant LOW 441C>T Asn147Asn
M0187554 EHFCEAJD_00043 36509 5 Gut 0.11 protein_coding synonymous_variant LOW 69C>T Phe23Phe
M0187555 EHFCEAJD_00044 36712 4 Gut 0.09 protein_coding synonymous_variant LOW 171T>G Thr57Thr
M0187556 EHFCEAJD_00044 36718 4 Gut 0.09 protein_coding synonymous_variant LOW 165T>C Gly55Gly
M0187557 EHFCEAJD_00044 36799 4 Gut 0.09 protein_coding synonymous_variant LOW 84A>T Ile28Ile
M0187558 EHFCEAJD_00044 36865 4 Gut 0.09 protein_coding synonymous_variant LOW 18A>T Pro6Pro
M0187559 EHFCEAJD_00044 36866 4 Gut 0.09 protein_coding missense_variant MODERATE 17C>T Pro6Leu
M0187560 EHFCEAJD_00044 36870 4 Gut 0.09 protein_coding missense_variant MODERATE 13T>C Tyr5His
M0187561 EHFCEAJD_00044 36877 4 Gut 0.09 protein_coding synonymous_variant LOW 6G>A Ser2Ser
M0187562 EHFCEAJD_00045 36926 4 Gut 0.09 protein_coding synonymous_variant LOW 273G>C Leu91Leu
M0187563 EHFCEAJD_00045 36929 4 Gut 0.09 protein_coding synonymous_variant LOW 270T>C Phe90Phe
M0187564 EHFCEAJD_00045 37013 4 Gut 0.09 protein_coding synonymous_variant LOW 186A>G Gly62Gly
M0187565 EHFCEAJD_00045 37018 4 Gut 0.09 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0187566 EHFCEAJD_00045 37027 4 Gut 0.09 protein_coding missense_variant MODERATE 172G>A Val58Ile
M0187567 EHFCEAJD_00045 37030 4 Gut 0.09 protein_coding missense_variant MODERATE 169C>A Leu57Ile
M0187568 EHFCEAJD_00046 37359 7 Gut 0.16 protein_coding synonymous_variant LOW 201A>G Glu67Glu
M0187569 EHFCEAJD_00041 37641 8 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4591C>T None
M0187570 EHFCEAJD_00041 37642 8 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4592C>T None
M0187571 EHFCEAJD_00047 37957 6 Gut 0.13 protein_coding missense_variant MODERATE 253A>G Ile85Val
M0187572 EHFCEAJD_00042 38578 5 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4852T>C None
M0187573 EHFCEAJD_00042 38610 5 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4884A>G None
M0187574 EHFCEAJD_00042 38637 5 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4911A>G None
M0187575 EHFCEAJD_00048 38788 6 Gut 0.13 protein_coding synonymous_variant LOW 66C>T Ser22Ser
M0187576 EHFCEAJD_00049 39839 4 Gut 0.09 protein_coding missense_variant MODERATE 116C>T Pro39Leu
M0187577 EHFCEAJD_00050 40078 5 Gut 0.11 protein_coding missense_variant MODERATE 388A>G Thr130Ala
M0187578 EHFCEAJD_00043 34817 5 Gut 0.11 protein_coding synonymous_variant LOW 1761A>T Ala587Ala
M0187579 EHFCEAJD_00009 6827 5 Gut 0.11 protein_coding synonymous_variant LOW 957T>C Asn319Asn
M0187580 EHFCEAJD_00044 36757 6 Gut 0.13 protein_coding synonymous_variant LOW 126T>C Cys42Cys
M0187581 EHFCEAJD_00025 26505 4 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4633C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
EHFCEAJD_00023 9.B.154.1.1 95.2 3.1e-84 1 167 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.154 The Putative Holin-2 (PH-2) Family