Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C902
  Reference Plasmid   NZ_CP075648.1
  Reference Plasmid Size   3064
  Reference Plasmid GC Content   0.45
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0188229 FPMMBFNE_00002 240 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1251A>G None
M0188230 FPMMBFNE_00002 273 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1218T>C None
M0188231 FPMMBFNE_00002 587 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -904A>G None
M0188232 FPMMBFNE_00002 594 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -897A>G None
M0188233 FPMMBFNE_00002 847 3 Gut 0.60 protein_coding upstream_gene_variant MODIFIER -644T>C None
M0188234 FPMMBFNE_00002 878 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -613T>C None
M0188235 FPMMBFNE_00002 882 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -609G>A None
M0188236 FPMMBFNE_00002 900 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -591A>G None
M0188237 FPMMBFNE_00002 907 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -584A>G None
M0188238 FPMMBFNE_00002 949 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -542A>G None
M0188239 FPMMBFNE_00001 1091 4 Gut 0.80 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0188240 FPMMBFNE_00001 1096 4 Gut 0.80 protein_coding missense_variant MODERATE 211G>A Ala71Thr
M0188241 FPMMBFNE_00001 1128 4 Gut 0.80 protein_coding missense_variant MODERATE 179C>T Pro60Leu
M0188242 FPMMBFNE_00001 1191 4 Gut 0.80 protein_coding missense_variant MODERATE 116T>C Val39Ala
M0188243 FPMMBFNE_00001 1222 4 Gut 0.80 protein_coding missense_variant MODERATE 85A>C Ile29Leu
M0188244 FPMMBFNE_00002 1757 4 Gut 0.80 protein_coding missense_variant MODERATE 267G>A Met89Ile
M0188245 FPMMBFNE_00002 1874 4 Gut 0.80 protein_coding synonymous_variant LOW 384G>A Ala128Ala
M0188246 FPMMBFNE_00001 2083 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -777A>G None
M0188247 FPMMBFNE_00001 2103 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -797C>G None
M0188248 FPMMBFNE_00001 2113 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -807G>A None
M0188249 FPMMBFNE_00001 2128 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -822A>G None
M0188250 FPMMBFNE_00001 2142 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -836G>A None
M0188251 FPMMBFNE_00001 2166 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -860T>C None
M0188252 FPMMBFNE_00001 2179 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -873T>C None
M0188253 FPMMBFNE_00001 2181 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -875C>T None
M0188254 FPMMBFNE_00003 2186 4 Gut 0.80 protein_coding missense_variant MODERATE 449A>G His150Arg
M0188255 FPMMBFNE_00003 2187 4 Gut 0.80 protein_coding missense_variant MODERATE 448C>T His150Tyr
M0188256 FPMMBFNE_00003 2189 4 Gut 0.80 protein_coding missense_variant MODERATE 446G>A Arg149Lys
M0188257 FPMMBFNE_00003 2239 4 Gut 0.80 protein_coding missense_variant MODERATE 396A>G Ile132Met
M0188258 FPMMBFNE_00003 2434 5 Gut 1.00 protein_coding synonymous_variant LOW 201G>A Arg67Arg
M0188259 FPMMBFNE_00003 2476 5 Gut 1.00 protein_coding synonymous_variant LOW 159T>G Ser53Ser
M0188260 FPMMBFNE_00003 2477 5 Gut 1.00 protein_coding missense_variant MODERATE 158C>T Ser53Phe
M0188261 FPMMBFNE_00003 2493 5 Gut 1.00 protein_coding synonymous_variant LOW 142A>C Arg48Arg
M0188262 FPMMBFNE_00003 2497 4 Gut 0.80 protein_coding synonymous_variant LOW 138G>A Glu46Glu
M0188263 FPMMBFNE_00003 2499 5 Gut 1.00 protein_coding missense_variant MODERATE 136G>A Glu46Lys
M0188264 FPMMBFNE_00003 2536 5 Gut 1.00 protein_coding synonymous_variant LOW 99C>T Arg33Arg
M0188265 FPMMBFNE_00001 2689 5 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1383T>C None
M0188266 FPMMBFNE_00001 2714 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1408C>T None
M0188267 FPMMBFNE_00001 2745 5 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1439T>C None
M0188268 FPMMBFNE_00001 2824 5 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1518G>A None
M0188269 FPMMBFNE_00001 2897 5 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -1591C>T None
M0188270 FPMMBFNE_00001 2979 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1673A>G None
M0188271 FPMMBFNE_00001 3004 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1698G>A None
M0188272 FPMMBFNE_00001 3026 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1720C>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term