Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C930
  Reference Plasmid   NZ_CP081905.1
  Reference Plasmid Size   98241
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0188625 BBINHPIA_00016 12336 4 Gut 0.07 protein_coding missense_variant MODERATE 202C>T Leu68Phe
M0188626 BBINHPIA_00070 50250 3 Gut 0.05 protein_coding missense_variant MODERATE 263G>A Gly88Asp
M0188627 BBINHPIA_00066 53159 4 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4824G>A None
M0188628 BBINHPIA_00074 53207 3 Gut 0.05 protein_coding missense_variant MODERATE 904A>G Met302Val
M0188629 BBINHPIA_00074 53274 3 Gut 0.05 protein_coding synonymous_variant LOW 837T>A Val279Val
M0188630 BBINHPIA_00074 53323 3 Gut 0.05 protein_coding missense_variant MODERATE 788T>C Val263Ala
M0188631 BBINHPIA_00074 53347 3 Gut 0.05 protein_coding missense_variant MODERATE 764G>A Gly255Asp
M0188632 BBINHPIA_00074 53382 3 Gut 0.05 protein_coding synonymous_variant LOW 729A>C Ser243Ser
M0188633 BBINHPIA_00074 53402 3 Gut 0.05 protein_coding synonymous_variant LOW 709T>C Leu237Leu
M0188634 BBINHPIA_00074 53530 3 Gut 0.05 protein_coding missense_variant MODERATE 581C>G Ala194Gly
M0188635 BBINHPIA_00075 54855 5 Gut 0.09 protein_coding missense_variant MODERATE 443T>G Leu148Trp
M0188636 BBINHPIA_00075 54884 3 Gut 0.05 protein_coding synonymous_variant LOW 414C>A Val138Val
M0188637 BBINHPIA_00075 54971 4 Gut 0.07 protein_coding synonymous_variant LOW 327C>T Ser109Ser
M0188638 BBINHPIA_00076 55669 5 Gut 0.09 protein_coding synonymous_variant LOW 24C>T Ala8Ala
M0188639 BBINHPIA_00076 55670 5 Gut 0.09 protein_coding missense_variant MODERATE 25T>A Ser9Thr
M0188640 BBINHPIA_00076 55747 5 Gut 0.09 protein_coding synonymous_variant LOW 102A>T Arg34Arg
M0188641 BBINHPIA_00076 55776 5 Gut 0.09 protein_coding missense_variant MODERATE 131T>C Val44Ala
M0188642 BBINHPIA_00076 56686 3 Gut 0.05 protein_coding synonymous_variant LOW 1041A>G Glu347Glu
M0188643 BBINHPIA_00082 65220 12 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -1718T>C None
M0188644 BBINHPIA_00082 65275 11 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -1773T>C None
M0188645 BBINHPIA_00082 65302 9 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1800C>A None
M0188646 BBINHPIA_00082 65318 9 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1816C>T None
M0188647 BBINHPIA_00082 65383 10 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -1881A>C None
M0188648 BBINHPIA_00107 87950 9 Gut 0.16 protein_coding missense_variant MODERATE 878C>T Pro293Leu
M0188649 BBINHPIA_00076 55652 3 Gut 0.05 protein_coding missense_variant MODERATE 7A>T Ile3Phe
M0188650 BBINHPIA_00079 59666 3 Gut 0.05 protein_coding synonymous_variant LOW 615G>A Gly205Gly
M0188651 BBINHPIA_00075 54196 3 Gut 0.05 protein_coding missense_variant MODERATE 1102C>T Arg368Cys
M0188652 BBINHPIA_00075 54200 3 Gut 0.05 protein_coding missense_variant MODERATE 1098C>A Asn366Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BBINHPIA_00094 PHI:3281 AS87_04050 71.4 3e-136 1 325 1.0000 1.0000 birds fibrinous serositis; caseous salpingitis; vegetative disorder lipopolysaccharide biosynthesis and pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BBINHPIA_00099 QUT83193.1|GT4 100 0 1 444 1 1
BBINHPIA_00100 QRP91614.1|GT4 100 4.79e-292 1 391 1 1
BBINHPIA_00101 BBK89584.1|GT2 100 6.37e-226 1 300 1 1
BBINHPIA_00102 QRP91616.1|GT4 100 5.41e-274 1 366 1 1
BBINHPIA_00104 QUT55894.1|GT2 100 1.57e-228 1 304 1 1
BBINHPIA_00106 QUT64421.1|GT4 100 1.11e-279 1 378 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term