Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C931
  Reference Plasmid   NZ_CP081907.1
  Reference Plasmid Size   98241
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0188653 MGLPGDMI_00102 81763 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -1718T>C None
M0188654 MGLPGDMI_00085 64702 4 Gut 0.11 protein_coding missense_variant MODERATE 415A>G Thr139Ala
M0188655 MGLPGDMI_00089 66676 3 Gut 0.08 protein_coding missense_variant MODERATE 47G>A Arg16Lys
M0188656 MGLPGDMI_00090 67004 3 Gut 0.08 protein_coding missense_variant MODERATE 52G>A Val18Met
M0188657 MGLPGDMI_00086 67073 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2195G>A None
M0188658 MGLPGDMI_00086 67199 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2321T>C None
M0188659 MGLPGDMI_00086 67200 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2322G>A None
M0188660 MGLPGDMI_00086 67207 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2329T>G None
M0188661 MGLPGDMI_00086 67238 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2360A>G None
M0188662 MGLPGDMI_00086 67277 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2399G>T None
M0188663 MGLPGDMI_00091 67422 3 Gut 0.08 protein_coding synonymous_variant LOW 81T>C Gly27Gly
M0188664 MGLPGDMI_00094 69817 3 Gut 0.08 protein_coding synonymous_variant LOW 837T>A Val279Val
M0188665 MGLPGDMI_00095 71398 3 Gut 0.08 protein_coding missense_variant MODERATE 443T>G Leu148Trp
M0188666 MGLPGDMI_00095 71427 3 Gut 0.08 protein_coding synonymous_variant LOW 414C>A Val138Val
M0188667 MGLPGDMI_00096 72213 3 Gut 0.08 protein_coding missense_variant MODERATE 25T>A Ser9Thr
M0188668 MGLPGDMI_00096 72290 3 Gut 0.08 protein_coding synonymous_variant LOW 102A>T Arg34Arg
M0188669 MGLPGDMI_00096 72319 3 Gut 0.08 protein_coding missense_variant MODERATE 131T>C Val44Ala
M0188670 MGLPGDMI_00096 73229 3 Gut 0.08 protein_coding synonymous_variant LOW 1041A>G Glu347Glu
M0188671 MGLPGDMI_00016 12405 3 Gut 0.08 protein_coding missense_variant MODERATE 23T>C Ile8Thr
M0188672 MGLPGDMI_00031 25056 3 Gut 0.08 protein_coding synonymous_variant LOW 735T>C Ile245Ile
M0188673 MGLPGDMI_00041 39201 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4677T>C None
M0188674 MGLPGDMI_00041 39203 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4679C>T None
M0188675 MGLPGDMI_00041 39230 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4706C>T None
M0188676 MGLPGDMI_00093 73292 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3623T>G None
M0188677 MGLPGDMI_00093 73297 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3628A>C None
M0188678 MGLPGDMI_00093 73304 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3635G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MGLPGDMI_00114 PHI:3281 AS87_04050 71.4 3e-136 1 325 1.0000 1.0000 birds fibrinous serositis; caseous salpingitis; vegetative disorder lipopolysaccharide biosynthesis and pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MGLPGDMI_00002 QRP91616.1|GT4 100 5.41e-274 1 366 1 1
MGLPGDMI_00004 QUT55894.1|GT2 100 1.57e-228 1 304 1 1
MGLPGDMI_00006 QUT64421.1|GT4 100 1.11e-279 1 378 1 1
MGLPGDMI_00119 QUT83193.1|GT4 100 0 1 444 1 1
MGLPGDMI_00120 QRP91614.1|GT4 100 4.79e-292 1 391 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term