Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C942
  Reference Plasmid   NZ_CP082332.1
  Reference Plasmid Size   93917
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0104857 OGIHNAKO_00047 48045 3 Skin 0.07 protein_coding synonymous_variant LOW 1092A>C Thr364Thr
M0104858 OGIHNAKO_00047 48273 4 Skin 0.09 protein_coding synonymous_variant LOW 864T>C Pro288Pro
M0104859 OGIHNAKO_00047 48279 4 Skin 0.09 protein_coding synonymous_variant LOW 858T>C Pro286Pro
M0104860 OGIHNAKO_00054 54530 3 Skin 0.07 protein_coding missense_variant MODERATE 568G>A Val190Ile
M0104861 OGIHNAKO_00056 57005 6 Skin 0.13 protein_coding synonymous_variant LOW 1521T>C Arg507Arg
M0104862 OGIHNAKO_00059 58832 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -68C>T None
M0104863 OGIHNAKO_00059 58876 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -24C>T None
M0104864 OGIHNAKO_00060 59257 3 Skin 0.07 protein_coding synonymous_variant LOW 132C>T Gly44Gly
M0104865 OGIHNAKO_00060 59425 3 Skin 0.07 protein_coding synonymous_variant LOW 300A>G Gly100Gly
M0104866 OGIHNAKO_00061 59598 3 Skin 0.07 protein_coding synonymous_variant LOW 66T>G Leu22Leu
M0104867 OGIHNAKO_00061 59881 3 Skin 0.07 protein_coding missense_variant MODERATE 349T>A Ser117Thr
M0104868 OGIHNAKO_00062 60023 3 Skin 0.07 protein_coding missense_variant MODERATE 39A>C Gln13His
M0104869 OGIHNAKO_00063 60457 5 Skin 0.11 protein_coding missense_variant MODERATE 41C>T Ala14Val
M0104870 OGIHNAKO_00003 2367 3 Skin 0.07 protein_coding synonymous_variant LOW 195T>C Gly65Gly
M0104871 OGIHNAKO_00003 2550 3 Skin 0.07 protein_coding synonymous_variant LOW 378T>C Val126Val
M0104872 OGIHNAKO_00002 2593 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1053G>C None
M0104873 OGIHNAKO_00004 2920 3 Skin 0.07 protein_coding missense_variant MODERATE 145C>G Pro49Ala
M0104874 OGIHNAKO_00004 2958 3 Skin 0.07 protein_coding missense_variant MODERATE 183T>G Asp61Glu
M0104875 OGIHNAKO_00004 2977 3 Skin 0.07 protein_coding missense_variant MODERATE 202A>G Thr68Ala
M0104876 OGIHNAKO_00002 3019 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1479T>C None
M0104877 OGIHNAKO_00005 3244 4 Skin 0.09 protein_coding synonymous_variant LOW 951G>A Val317Val
M0104878 OGIHNAKO_00005 3373 3 Skin 0.07 protein_coding synonymous_variant LOW 822G>A Ala274Ala
M0104879 OGIHNAKO_00036 38130 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3634C>A None
M0104880 OGIHNAKO_00032 32724 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2050A>G None
M0104881 OGIHNAKO_00063 60695 3 Skin 0.07 protein_coding synonymous_variant LOW 279G>C Gly93Gly
M0104882 OGIHNAKO_00063 60740 3 Skin 0.07 protein_coding synonymous_variant LOW 324G>C Leu108Leu
M0104883 OGIHNAKO_00063 60762 3 Skin 0.07 protein_coding synonymous_variant LOW 346T>C Leu116Leu
M0104884 OGIHNAKO_00063 60838 3 Skin 0.07 protein_coding missense_variant MODERATE 422T>C Val141Ala
M0104885 OGIHNAKO_00063 61064 3 Skin 0.07 protein_coding synonymous_variant LOW 648A>G Ala216Ala
M0104886 OGIHNAKO_00064 61507 3 Skin 0.07 protein_coding synonymous_variant LOW 363A>G Pro121Pro
M0104887 OGIHNAKO_00043 43652 4 Skin 0.09 protein_coding missense_variant MODERATE 1004T>C Val335Ala
M0104888 OGIHNAKO_00043 43861 3 Skin 0.07 protein_coding synonymous_variant LOW 795A>C Pro265Pro
M0104889 OGIHNAKO_00043 43904 3 Skin 0.07 protein_coding missense_variant MODERATE 752A>G Asp251Gly
M0104890 OGIHNAKO_00043 43993 4 Skin 0.09 protein_coding synonymous_variant LOW 663T>C Ala221Ala
M0104891 OGIHNAKO_00043 44026 4 Skin 0.09 protein_coding synonymous_variant LOW 630T>C Gly210Gly
M0104892 OGIHNAKO_00043 44626 4 Skin 0.09 protein_coding synonymous_variant LOW 30C>T Ala10Ala
M0104893 OGIHNAKO_00044 45433 5 Skin 0.11 protein_coding missense_variant MODERATE 1775G>T Gly592Val
M0104894 OGIHNAKO_00044 46017 5 Skin 0.11 protein_coding synonymous_variant LOW 1191T>G Leu397Leu
M0104895 OGIHNAKO_00044 46130 6 Skin 0.13 protein_coding missense_variant MODERATE 1078G>A Val360Ile
M0104896 OGIHNAKO_00044 46227 4 Skin 0.09 protein_coding synonymous_variant LOW 981A>C Ser327Ser
M0104897 OGIHNAKO_00044 46574 3 Skin 0.07 protein_coding missense_variant MODERATE 634C>A Leu212Ile
M0104898 OGIHNAKO_00044 46579 5 Skin 0.11 protein_coding missense_variant MODERATE 629T>C Val210Ala
M0104899 OGIHNAKO_00044 46593 5 Skin 0.11 protein_coding synonymous_variant LOW 615T>G Ala205Ala
M0104900 OGIHNAKO_00044 46608 3 Skin 0.07 protein_coding synonymous_variant LOW 600G>A Gly200Gly
M0104901 OGIHNAKO_00044 46623 3 Skin 0.07 protein_coding synonymous_variant LOW 585T>C Thr195Thr
M0104902 OGIHNAKO_00044 46999 5 Skin 0.11 protein_coding missense_variant MODERATE 209T>C Val70Ala
M0104903 OGIHNAKO_00045 47320 5 Skin 0.11 protein_coding missense_variant MODERATE 400A>C Met134Leu
M0104904 OGIHNAKO_00045 47331 3 Skin 0.07 protein_coding missense_variant MODERATE 389T>C Leu130Pro
M0104905 OGIHNAKO_00045 47534 3 Skin 0.07 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0104906 OGIHNAKO_00045 47539 3 Skin 0.07 protein_coding missense_variant MODERATE 181T>C Phe61Leu
M0104907 OGIHNAKO_00045 47557 3 Skin 0.07 protein_coding missense_variant MODERATE 163T>A Ser55Thr
M0104908 OGIHNAKO_00045 47645 5 Skin 0.11 protein_coding synonymous_variant LOW 75G>C Thr25Thr
M0104909 OGIHNAKO_00005 3445 3 Skin 0.07 protein_coding synonymous_variant LOW 750T>C Val250Val
M0104910 OGIHNAKO_00005 3454 3 Skin 0.07 protein_coding synonymous_variant LOW 741T>C Pro247Pro
M0104911 OGIHNAKO_00005 3555 3 Skin 0.07 protein_coding missense_variant MODERATE 640G>A Ala214Thr
M0104912 OGIHNAKO_00005 3562 3 Skin 0.07 protein_coding synonymous_variant LOW 633T>C Thr211Thr
M0104913 OGIHNAKO_00043 43015 3 Skin 0.07 protein_coding missense_variant MODERATE 1641G>C Met547Ile
M0104914 OGIHNAKO_00043 43183 3 Skin 0.07 protein_coding synonymous_variant LOW 1473T>C Ser491Ser
M0104915 OGIHNAKO_00043 44440 3 Skin 0.07 protein_coding synonymous_variant LOW 216C>T Ile72Ile
M0104916 OGIHNAKO_00044 46698 3 Skin 0.07 protein_coding synonymous_variant LOW 510T>C Ala170Ala
M0104917 OGIHNAKO_00046 47915 3 Skin 0.07 protein_coding missense_variant MODERATE 92C>T Thr31Ile
M0104918 OGIHNAKO_00046 47916 3 Skin 0.07 protein_coding missense_variant MODERATE 91A>G Thr31Ala
M0104919 OGIHNAKO_00027 24792 3 Skin 0.07 protein_coding synonymous_variant LOW 9A>G Arg3Arg
M0104920 OGIHNAKO_00045 47319 3 Skin 0.07 protein_coding missense_variant MODERATE 401T>C Met134Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OGIHNAKO_00042 QZY85236.1|GH184 100 0 1 588 1 1
OGIHNAKO_00067 QZY85261.1|CBM50 100 0 1 1151 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term