Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C954
  Reference Plasmid   NZ_CP084005.1
  Reference Plasmid Size   29994
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0189529 JGHAGDFN_00007 6649 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1405G>A None
M0189530 JGHAGDFN_00007 6772 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1528C>G None
M0189531 JGHAGDFN_00010 6955 9 Gut 0.27 protein_coding synonymous_variant LOW 231C>T Phe77Phe
M0189532 JGHAGDFN_00010 7018 9 Gut 0.27 protein_coding synonymous_variant LOW 168A>G Pro56Pro
M0189533 JGHAGDFN_00010 7147 9 Gut 0.27 protein_coding synonymous_variant LOW 39C>T Asp13Asp
M0189534 JGHAGDFN_00010 7177 9 Gut 0.27 protein_coding synonymous_variant LOW 9C>T Tyr3Tyr
M0189535 JGHAGDFN_00010 7180 9 Gut 0.27 protein_coding synonymous_variant LOW 6G>A Glu2Glu
M0189536 JGHAGDFN_00011 7329 8 Gut 0.24 protein_coding synonymous_variant LOW 123A>G Arg41Arg
M0189537 JGHAGDFN_00011 7350 8 Gut 0.24 protein_coding synonymous_variant LOW 102C>A Ile34Ile
M0189538 JGHAGDFN_00007 7466 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2222G>A None
M0189539 JGHAGDFN_00007 7505 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2261C>A None
M0189540 JGHAGDFN_00007 7506 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2262C>G None
M0189541 JGHAGDFN_00007 7508 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2264T>C None
M0189542 JGHAGDFN_00007 7510 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2266A>G None
M0189543 JGHAGDFN_00007 7526 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2282C>T None
M0189544 JGHAGDFN_00007 7530 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2286A>C None
M0189545 JGHAGDFN_00007 7621 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -2377C>T None
M0189546 JGHAGDFN_00007 7653 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -2409T>C None
M0189547 JGHAGDFN_00013 8600 13 Gut 0.39 protein_coding missense_variant MODERATE 125T>G Leu42Arg
M0189548 JGHAGDFN_00013 8610 12 Gut 0.36 protein_coding synonymous_variant LOW 135T>C Asp45Asp
M0189549 JGHAGDFN_00013 8776 3 Gut 0.09 protein_coding missense_variant MODERATE 301G>A Ala101Thr
M0189550 JGHAGDFN_00013 9148 7 Gut 0.21 protein_coding missense_variant MODERATE 673A>G Thr225Ala
M0189551 JGHAGDFN_00014 9245 9 Gut 0.27 protein_coding synonymous_variant LOW 75C>T Leu25Leu
M0189552 JGHAGDFN_00008 5543 5 Gut 0.15 protein_coding synonymous_variant LOW 160C>T Leu54Leu
M0189553 JGHAGDFN_00008 5559 5 Gut 0.15 protein_coding missense_variant MODERATE 176C>T Pro59Leu
M0189554 JGHAGDFN_00008 5620 7 Gut 0.21 protein_coding synonymous_variant LOW 237A>G Leu79Leu
M0189555 JGHAGDFN_00008 5807 7 Gut 0.21 protein_coding missense_variant MODERATE 424G>A Gly142Ser
M0189556 JGHAGDFN_00009 6380 6 Gut 0.18 protein_coding missense_variant MODERATE 175T>C Ser59Pro
M0189557 JGHAGDFN_00010 6993 8 Gut 0.24 protein_coding synonymous_variant LOW 193A>C Arg65Arg
M0189558 JGHAGDFN_00011 7221 8 Gut 0.24 protein_coding synonymous_variant LOW 231G>A Leu77Leu
M0189559 JGHAGDFN_00011 7340 7 Gut 0.21 protein_coding missense_variant MODERATE 112C>T Arg38Cys
M0189560 JGHAGDFN_00007 5013 5 Gut 0.15 protein_coding missense_variant MODERATE 232T>C Cys78Arg
M0189561 JGHAGDFN_00007 5134 5 Gut 0.15 protein_coding synonymous_variant LOW 111C>T Ala37Ala
M0189562 JGHAGDFN_00017 11326 4 Gut 0.12 protein_coding synonymous_variant LOW 96C>T Tyr32Tyr
M0189563 JGHAGDFN_00017 11332 4 Gut 0.12 protein_coding synonymous_variant LOW 90T>C Asp30Asp
M0189564 JGHAGDFN_00017 11337 4 Gut 0.12 protein_coding missense_variant MODERATE 85G>A Gly29Ser
M0189565 JGHAGDFN_00018 11440 5 Gut 0.15 protein_coding missense_variant MODERATE 617G>A Arg206Lys
M0189566 JGHAGDFN_00018 11583 3 Gut 0.09 protein_coding synonymous_variant LOW 474T>C Asp158Asp
M0189567 JGHAGDFN_00018 11644 5 Gut 0.15 protein_coding missense_variant MODERATE 413C>G Ala138Gly
M0189568 JGHAGDFN_00018 11814 3 Gut 0.09 protein_coding synonymous_variant LOW 243C>T His81His
M0189569 JGHAGDFN_00021 18713 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4308G>T None
M0189570 JGHAGDFN_00021 18720 12 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -4315A>G None
M0189571 JGHAGDFN_00021 18785 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4380G>A None
M0189572 JGHAGDFN_00021 18786 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4381T>G None
M0189573 JGHAGDFN_00029 18811 4 Gut 0.12 protein_coding synonymous_variant LOW 3255G>A Gln1085Gln
M0189574 JGHAGDFN_00029 18814 4 Gut 0.12 protein_coding synonymous_variant LOW 3252C>T Asp1084Asp
M0189575 JGHAGDFN_00029 18832 8 Gut 0.24 protein_coding synonymous_variant LOW 3234A>G Ala1078Ala
M0189576 JGHAGDFN_00029 18905 4 Gut 0.12 protein_coding missense_variant MODERATE 3161A>G Asn1054Ser
M0189577 JGHAGDFN_00029 18994 3 Gut 0.09 protein_coding synonymous_variant LOW 3072C>T Ile1024Ile
M0189578 JGHAGDFN_00029 19043 5 Gut 0.15 protein_coding stop_gained HIGH 3023C>A Ser1008*
M0189579 JGHAGDFN_00029 19044 4 Gut 0.12 protein_coding missense_variant MODERATE 3022T>C Ser1008Pro
M0189580 JGHAGDFN_00029 19062 4 Gut 0.12 protein_coding missense_variant MODERATE 3004A>G Thr1002Ala
M0189581 JGHAGDFN_00029 19123 5 Gut 0.15 protein_coding synonymous_variant LOW 2943T>C Ala981Ala
M0189582 JGHAGDFN_00029 19193 4 Gut 0.12 protein_coding missense_variant MODERATE 2873C>T Ala958Val
M0189583 JGHAGDFN_00029 19195 4 Gut 0.12 protein_coding synonymous_variant LOW 2871C>T Asp957Asp
M0189584 JGHAGDFN_00029 19227 5 Gut 0.15 protein_coding missense_variant MODERATE 2839A>G Asn947Asp
M0189585 JGHAGDFN_00029 19276 3 Gut 0.09 protein_coding synonymous_variant LOW 2790A>G Glu930Glu
M0189586 JGHAGDFN_00029 19282 5 Gut 0.15 protein_coding synonymous_variant LOW 2784T>C Ala928Ala
M0189587 JGHAGDFN_00029 19315 5 Gut 0.15 protein_coding synonymous_variant LOW 2751T>G Ala917Ala
M0189588 JGHAGDFN_00029 19333 5 Gut 0.15 protein_coding missense_variant MODERATE 2733A>C Glu911Asp
M0189589 JGHAGDFN_00029 19334 5 Gut 0.15 protein_coding missense_variant MODERATE 2732A>C Glu911Ala
M0189590 JGHAGDFN_00029 24199 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -2134T>C None
M0189591 JGHAGDFN_00032 24328 4 Gut 0.12 protein_coding missense_variant MODERATE 296G>A Ser99Asn
M0189592 JGHAGDFN_00032 24440 3 Gut 0.09 protein_coding missense_variant MODERATE 184A>G Thr62Ala
M0189593 JGHAGDFN_00033 24729 7 Gut 0.21 protein_coding missense_variant MODERATE 1711G>A Asp571Asn
M0189594 JGHAGDFN_00033 24739 7 Gut 0.21 protein_coding synonymous_variant LOW 1701G>A Ala567Ala
M0189595 JGHAGDFN_00033 25065 4 Gut 0.12 protein_coding missense_variant MODERATE 1375A>G Thr459Ala
M0189596 JGHAGDFN_00033 25068 3 Gut 0.09 protein_coding missense_variant MODERATE 1372G>A Gly458Ser
M0189597 JGHAGDFN_00033 25122 3 Gut 0.09 protein_coding missense_variant MODERATE 1318C>A Arg440Ser
M0189598 JGHAGDFN_00033 25219 4 Gut 0.12 protein_coding synonymous_variant LOW 1221C>T Val407Val
M0189599 JGHAGDFN_00033 25378 4 Gut 0.12 protein_coding synonymous_variant LOW 1062C>T Phe354Phe
M0189600 JGHAGDFN_00033 25441 4 Gut 0.12 protein_coding synonymous_variant LOW 999C>T Ile333Ile
M0189601 JGHAGDFN_00033 25471 3 Gut 0.09 protein_coding synonymous_variant LOW 969C>T Gly323Gly
M0189602 JGHAGDFN_00033 25477 3 Gut 0.09 protein_coding synonymous_variant LOW 963C>A Ala321Ala
M0189603 JGHAGDFN_00033 25552 3 Gut 0.09 protein_coding synonymous_variant LOW 888G>A Leu296Leu
M0189604 JGHAGDFN_00033 25585 3 Gut 0.09 protein_coding synonymous_variant LOW 855A>C Ser285Ser
M0189605 JGHAGDFN_00032 27954 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3331G>T None
M0189606 JGHAGDFN_00032 28276 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3653G>A None
M0189607 JGHAGDFN_00032 28919 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4296A>G None
M0189608 JGHAGDFN_00032 28992 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4369T>C None
M0189609 JGHAGDFN_00035 29074 3 Gut 0.09 protein_coding synonymous_variant LOW 6C>T Arg2Arg
M0189610 JGHAGDFN_00035 29075 3 Gut 0.09 protein_coding stop_gained HIGH 7G>T Glu3*
M0189611 JGHAGDFN_00035 29078 3 Gut 0.09 protein_coding missense_variant MODERATE 10T>C Ser4Pro
M0189612 JGHAGDFN_00035 29285 3 Gut 0.09 protein_coding missense_variant MODERATE 217T>C Trp73Arg
M0189613 JGHAGDFN_00014 9323 5 Gut 0.15 protein_coding stop_gained HIGH 153G>A Trp51*
M0189614 JGHAGDFN_00032 27886 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3263T>C None
M0189615 JGHAGDFN_00033 24733 3 Gut 0.09 protein_coding synonymous_variant LOW 1707C>T Leu569Leu
M0189616 JGHAGDFN_00033 24778 3 Gut 0.09 protein_coding synonymous_variant LOW 1662A>C Arg554Arg
M0189617 JGHAGDFN_00033 25099 3 Gut 0.09 protein_coding synonymous_variant LOW 1341T>C Phe447Phe
M0189618 JGHAGDFN_00033 25330 3 Gut 0.09 protein_coding synonymous_variant LOW 1110G>T Ala370Ala
M0189619 JGHAGDFN_00033 25341 3 Gut 0.09 protein_coding missense_variant MODERATE 1099C>G Pro367Ala
M0189620 JGHAGDFN_00007 8413 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3169A>G None
M0189621 JGHAGDFN_00020 17667 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4720A>G None
M0189622 JGHAGDFN_00020 17688 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4741T>C None
M0189623 JGHAGDFN_00020 17711 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4764C>G None
M0189624 JGHAGDFN_00020 17725 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4778A>T None
M0189625 JGHAGDFN_00020 17731 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4784C>T None
M0189626 JGHAGDFN_00020 17732 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4785A>C None
M0189627 JGHAGDFN_00021 18048 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -3643T>C None
M0189628 JGHAGDFN_00021 18066 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -3661T>G None
M0189629 JGHAGDFN_00021 18175 11 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -3770G>A None
M0189630 JGHAGDFN_00021 18229 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3824T>A None
M0189631 JGHAGDFN_00028 18548 10 Gut 0.30 protein_coding synonymous_variant LOW 78T>C Pro26Pro
M0189632 JGHAGDFN_00021 18731 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4326T>C None
M0189633 JGHAGDFN_00007 8390 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3146T>G None
M0189634 JGHAGDFN_00007 8391 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3147T>C None
M0189635 JGHAGDFN_00007 8394 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3150C>G None
M0189636 JGHAGDFN_00007 8415 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3171G>A None
M0189637 JGHAGDFN_00007 8429 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3185T>C None
M0189638 JGHAGDFN_00007 8432 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -3188A>G None
M0189639 JGHAGDFN_00007 8436 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3192T>C None
M0189640 JGHAGDFN_00013 8574 4 Gut 0.12 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0189641 JGHAGDFN_00013 8721 3 Gut 0.09 protein_coding synonymous_variant LOW 246T>C Ala82Ala
M0189642 JGHAGDFN_00013 8763 4 Gut 0.12 protein_coding synonymous_variant LOW 288T>C Ala96Ala
M0189643 JGHAGDFN_00013 8780 4 Gut 0.12 protein_coding missense_variant MODERATE 305T>C Met102Thr
M0189644 JGHAGDFN_00013 9154 5 Gut 0.15 protein_coding missense_variant MODERATE 679G>A Ala227Thr
M0189645 JGHAGDFN_00016 12973 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -2277T>A None
M0189646 JGHAGDFN_00016 12998 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -2302A>C None
M0189647 JGHAGDFN_00021 13782 10 Gut 0.30 protein_coding synonymous_variant LOW 624G>A Pro208Pro
M0189648 JGHAGDFN_00016 14463 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3767G>A None
M0189649 JGHAGDFN_00016 14466 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3770T>G None
M0189650 JGHAGDFN_00022 14594 10 Gut 0.30 protein_coding missense_variant MODERATE 764T>C Ile255Thr
M0189651 JGHAGDFN_00022 14843 10 Gut 0.30 protein_coding missense_variant MODERATE 515T>C Val172Ala
M0189652 JGHAGDFN_00022 14903 10 Gut 0.30 protein_coding missense_variant MODERATE 455G>A Arg152Lys
M0189653 JGHAGDFN_00022 15100 9 Gut 0.27 protein_coding synonymous_variant LOW 258C>A Gly86Gly
M0189654 JGHAGDFN_00022 15166 6 Gut 0.18 protein_coding synonymous_variant LOW 192T>C Leu64Leu
M0189655 JGHAGDFN_00017 15882 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4461C>T None
M0189656 JGHAGDFN_00017 16003 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4582G>A None
M0189657 JGHAGDFN_00017 16031 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4610G>A None
M0189658 JGHAGDFN_00017 16101 10 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4680A>G None
M0189659 JGHAGDFN_00017 16219 9 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4798A>G None
M0189660 JGHAGDFN_00017 16261 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4840T>C None
M0189661 JGHAGDFN_00024 16548 10 Gut 0.30 protein_coding missense_variant MODERATE 155A>G Asp52Gly
M0189662 JGHAGDFN_00024 16618 9 Gut 0.27 protein_coding missense_variant MODERATE 85G>A Asp29Asn
M0189663 JGHAGDFN_00025 16769 3 Gut 0.09 protein_coding synonymous_variant LOW 225A>G Glu75Glu
M0189664 JGHAGDFN_00021 18088 8 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -3683T>C None
M0189665 JGHAGDFN_00021 18200 8 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -3795T>C None
M0189666 JGHAGDFN_00029 19085 3 Gut 0.09 protein_coding missense_variant MODERATE 2981A>G Glu994Gly
M0189667 JGHAGDFN_00029 19307 4 Gut 0.12 protein_coding missense_variant MODERATE 2759C>T Ala920Val
M0189668 JGHAGDFN_00029 19308 4 Gut 0.12 protein_coding missense_variant MODERATE 2758G>A Ala920Thr
M0189669 JGHAGDFN_00029 19494 3 Gut 0.09 protein_coding missense_variant MODERATE 2572A>G Thr858Ala
M0189670 JGHAGDFN_00029 24256 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -2191T>C None
M0189671 JGHAGDFN_00033 24636 4 Gut 0.12 protein_coding missense_variant MODERATE 1804C>G Arg602Gly
M0189672 JGHAGDFN_00007 8368 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3124G>A None
M0189673 JGHAGDFN_00004 3671 5 Gut 0.15 protein_coding synonymous_variant LOW 816C>A Ile272Ile
M0189674 JGHAGDFN_00004 3678 5 Gut 0.15 protein_coding missense_variant MODERATE 823A>G Arg275Gly
M0189675 JGHAGDFN_00005 3739 3 Gut 0.09 protein_coding synonymous_variant LOW 51C>T Val17Val
M0189676 JGHAGDFN_00005 3754 6 Gut 0.18 protein_coding synonymous_variant LOW 66T>C Ser22Ser
M0189677 JGHAGDFN_00005 3781 3 Gut 0.09 protein_coding synonymous_variant LOW 93C>T Val31Val
M0189678 JGHAGDFN_00005 3808 6 Gut 0.18 protein_coding synonymous_variant LOW 120C>T Gly40Gly
M0189679 JGHAGDFN_00005 3820 3 Gut 0.09 protein_coding synonymous_variant LOW 132C>T Leu44Leu
M0189680 JGHAGDFN_00005 3844 6 Gut 0.18 protein_coding synonymous_variant LOW 156T>C Ile52Ile
M0189681 JGHAGDFN_00005 3846 6 Gut 0.18 protein_coding missense_variant MODERATE 158G>A Arg53Lys
M0189682 JGHAGDFN_00005 3847 6 Gut 0.18 protein_coding synonymous_variant LOW 159A>G Arg53Arg
M0189683 JGHAGDFN_00005 3856 6 Gut 0.18 protein_coding synonymous_variant LOW 168G>A Glu56Glu
M0189684 JGHAGDFN_00005 3862 6 Gut 0.18 protein_coding synonymous_variant LOW 174G>A Glu58Glu
M0189685 JGHAGDFN_00005 3866 6 Gut 0.18 protein_coding missense_variant MODERATE 178A>T Ile60Phe
M0189686 JGHAGDFN_00005 3867 6 Gut 0.18 protein_coding missense_variant MODERATE 179T>C Ile60Thr
M0189687 JGHAGDFN_00005 3891 3 Gut 0.09 protein_coding missense_variant MODERATE 203C>T Ala68Val
M0189688 JGHAGDFN_00005 3967 3 Gut 0.09 protein_coding synonymous_variant LOW 279C>T Asp93Asp
M0189689 JGHAGDFN_00005 3971 3 Gut 0.09 protein_coding synonymous_variant LOW 283C>T Leu95Leu
M0189690 JGHAGDFN_00005 3976 6 Gut 0.18 protein_coding synonymous_variant LOW 288A>G Glu96Glu
M0189691 JGHAGDFN_00005 4096 3 Gut 0.09 protein_coding synonymous_variant LOW 408G>A Gln136Gln
M0189692 JGHAGDFN_00005 4117 6 Gut 0.18 protein_coding synonymous_variant LOW 429G>A Ala143Ala
M0189693 JGHAGDFN_00005 4126 3 Gut 0.09 protein_coding synonymous_variant LOW 438G>A Glu146Glu
M0189694 JGHAGDFN_00005 4138 3 Gut 0.09 protein_coding synonymous_variant LOW 450G>A Leu150Leu
M0189695 JGHAGDFN_00005 4159 3 Gut 0.09 protein_coding synonymous_variant LOW 471G>A Thr157Thr
M0189696 JGHAGDFN_00005 4189 3 Gut 0.09 protein_coding missense_variant MODERATE 501G>A Met167Ile
M0189697 JGHAGDFN_00005 4234 3 Gut 0.09 protein_coding synonymous_variant LOW 546C>T Val182Val
M0189698 JGHAGDFN_00005 4235 3 Gut 0.09 protein_coding missense_variant MODERATE 547C>A Leu183Ile
M0189699 JGHAGDFN_00005 4313 6 Gut 0.18 protein_coding missense_variant MODERATE 625G>A Glu209Lys
M0189700 JGHAGDFN_00006 4359 3 Gut 0.09 protein_coding synonymous_variant LOW 21G>A Thr7Thr
M0189701 JGHAGDFN_00006 4365 3 Gut 0.09 protein_coding synonymous_variant LOW 27A>G Arg9Arg
M0189702 JGHAGDFN_00006 4366 3 Gut 0.09 protein_coding missense_variant MODERATE 28T>G Ser10Ala
M0189703 JGHAGDFN_00006 4370 3 Gut 0.09 protein_coding missense_variant MODERATE 32C>T Ala11Val
M0189704 JGHAGDFN_00006 4377 3 Gut 0.09 protein_coding synonymous_variant LOW 39G>T Ala13Ala
M0189705 JGHAGDFN_00006 4383 3 Gut 0.09 protein_coding synonymous_variant LOW 45T>C Phe15Phe
M0189706 JGHAGDFN_00006 4384 3 Gut 0.09 protein_coding missense_variant MODERATE 46T>G Cys16Gly
M0189707 JGHAGDFN_00006 4396 3 Gut 0.09 protein_coding missense_variant MODERATE 58G>A Ala20Thr
M0189708 JGHAGDFN_00006 4464 3 Gut 0.09 protein_coding synonymous_variant LOW 126C>T Tyr42Tyr
M0189709 JGHAGDFN_00006 4506 5 Gut 0.15 protein_coding synonymous_variant LOW 168A>G Gly56Gly
M0189710 JGHAGDFN_00006 4802 3 Gut 0.09 protein_coding missense_variant MODERATE 464T>C Val155Ala
M0189711 JGHAGDFN_00006 4803 6 Gut 0.18 protein_coding synonymous_variant LOW 465G>T Val155Val
M0189712 JGHAGDFN_00006 4932 3 Gut 0.09 protein_coding synonymous_variant LOW 594C>T Pro198Pro
M0189713 JGHAGDFN_00006 4938 3 Gut 0.09 protein_coding synonymous_variant LOW 600C>T Thr200Thr
M0189714 JGHAGDFN_00016 12972 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -2276G>T None
M0189715 JGHAGDFN_00016 12982 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2286T>C None
M0189716 JGHAGDFN_00016 13006 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -2310C>A None
M0189717 JGHAGDFN_00021 13638 5 Gut 0.15 protein_coding synonymous_variant LOW 768C>T Ser256Ser
M0189718 JGHAGDFN_00021 14085 5 Gut 0.15 protein_coding synonymous_variant LOW 321A>C Arg107Arg
M0189719 JGHAGDFN_00016 14444 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3748C>A None
M0189720 JGHAGDFN_00016 14445 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3749T>C None
M0189721 JGHAGDFN_00016 14446 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3750T>C None
M0189722 JGHAGDFN_00022 14623 7 Gut 0.21 protein_coding synonymous_variant LOW 735G>T Val245Val
M0189723 JGHAGDFN_00022 14743 5 Gut 0.15 protein_coding synonymous_variant LOW 615C>T Leu205Leu
M0189724 JGHAGDFN_00022 14865 5 Gut 0.15 protein_coding synonymous_variant LOW 493C>A Arg165Arg
M0189725 JGHAGDFN_00022 15253 7 Gut 0.21 protein_coding synonymous_variant LOW 105C>T Gly35Gly
M0189726 JGHAGDFN_00017 15773 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4352T>G None
M0189727 JGHAGDFN_00017 15821 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4400G>C None
M0189728 JGHAGDFN_00017 16244 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4823C>T None
M0189729 JGHAGDFN_00024 16349 6 Gut 0.18 protein_coding synonymous_variant LOW 354C>A Gly118Gly
M0189730 JGHAGDFN_00024 16513 6 Gut 0.18 protein_coding missense_variant MODERATE 190G>A Ala64Thr
M0189731 JGHAGDFN_00026 17262 6 Gut 0.18 protein_coding synonymous_variant LOW 327C>T Thr109Thr
M0189732 JGHAGDFN_00019 17605 4 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4984G>A None
M0189733 JGHAGDFN_00020 17665 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4718G>A None
M0189734 JGHAGDFN_00021 18214 6 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -3809A>G None
M0189735 JGHAGDFN_00021 18719 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4314C>A None
M0189736 JGHAGDFN_00021 18721 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4316A>C None
M0189737 JGHAGDFN_00021 18727 5 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4322C>T None
M0189738 JGHAGDFN_00029 18797 7 Gut 0.21 protein_coding missense_variant MODERATE 3269A>G Glu1090Gly
M0189739 JGHAGDFN_00029 18838 8 Gut 0.24 protein_coding synonymous_variant LOW 3228C>T Leu1076Leu
M0189740 JGHAGDFN_00029 18971 3 Gut 0.09 protein_coding missense_variant MODERATE 3095T>C Val1032Ala
M0189741 JGHAGDFN_00029 19409 3 Gut 0.09 protein_coding missense_variant MODERATE 2657G>A Gly886Asp
M0189742 JGHAGDFN_00006 4812 4 Gut 0.12 protein_coding synonymous_variant LOW 474T>C Gly158Gly
M0189743 JGHAGDFN_00033 24766 3 Gut 0.09 protein_coding synonymous_variant LOW 1674T>C Ile558Ile
M0189744 JGHAGDFN_00020 17723 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4776A>G None
M0189745 JGHAGDFN_00021 18682 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4277G>A None
M0189746 JGHAGDFN_00021 18684 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4279G>A None
M0189747 JGHAGDFN_00021 18685 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4280T>C None
M0189748 JGHAGDFN_00021 18687 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4282A>G None
M0189749 JGHAGDFN_00021 18690 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4285C>A None
M0189750 JGHAGDFN_00013 8638 3 Gut 0.09 protein_coding missense_variant MODERATE 163G>A Val55Met
M0189751 JGHAGDFN_00013 8644 3 Gut 0.09 protein_coding missense_variant MODERATE 169G>A Ala57Thr
M0189752 JGHAGDFN_00013 9012 3 Gut 0.09 protein_coding synonymous_variant LOW 537G>A Ala179Ala
M0189753 JGHAGDFN_00013 9164 3 Gut 0.09 protein_coding missense_variant MODERATE 689A>T Glu230Val
M0189754 JGHAGDFN_00014 9188 3 Gut 0.09 protein_coding missense_variant MODERATE 18G>T Arg6Ser
M0189755 JGHAGDFN_00014 9279 3 Gut 0.09 protein_coding missense_variant MODERATE 109G>C Ala37Pro
M0189756 JGHAGDFN_00014 9335 3 Gut 0.09 protein_coding synonymous_variant LOW 165A>G Ala55Ala
M0189757 JGHAGDFN_00017 11260 3 Gut 0.09 protein_coding synonymous_variant LOW 162C>T Ala54Ala
M0189758 JGHAGDFN_00017 11287 3 Gut 0.09 protein_coding synonymous_variant LOW 135C>T Phe45Phe
M0189759 JGHAGDFN_00017 11290 3 Gut 0.09 protein_coding synonymous_variant LOW 132T>C Asp44Asp
M0189760 JGHAGDFN_00017 11391 4 Gut 0.12 protein_coding missense_variant MODERATE 31G>A Gly11Ser
M0189761 JGHAGDFN_00018 11445 3 Gut 0.09 protein_coding synonymous_variant LOW 612G>T Ala204Ala
M0189762 JGHAGDFN_00018 11720 3 Gut 0.09 protein_coding missense_variant MODERATE 337A>T Ser113Cys
M0189763 JGHAGDFN_00018 11766 3 Gut 0.09 protein_coding synonymous_variant LOW 291G>A Glu97Glu
M0189764 JGHAGDFN_00018 11871 3 Gut 0.09 protein_coding synonymous_variant LOW 186C>A Ala62Ala
M0189765 JGHAGDFN_00010 12069 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4884G>A None
M0189766 JGHAGDFN_00010 12098 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4913A>T None
M0189767 JGHAGDFN_00010 12174 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4989C>T None
M0189768 JGHAGDFN_00011 12201 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4750A>G None
M0189769 JGHAGDFN_00011 12293 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4842C>T None
M0189770 JGHAGDFN_00011 12315 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4864C>T None
M0189771 JGHAGDFN_00001 106 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -236G>A None
M0189772 JGHAGDFN_00001 115 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -227G>A None
M0189773 JGHAGDFN_00001 135 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -207C>A None
M0189774 JGHAGDFN_00001 167 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -175A>G None
M0189775 JGHAGDFN_00001 191 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -151G>C None
M0189776 JGHAGDFN_00001 211 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -131G>A None
M0189777 JGHAGDFN_00001 527 3 Gut 0.09 protein_coding synonymous_variant LOW 186G>A Leu62Leu
M0189778 JGHAGDFN_00001 533 3 Gut 0.09 protein_coding synonymous_variant LOW 192C>T Ala64Ala
M0189779 JGHAGDFN_00001 875 3 Gut 0.09 protein_coding synonymous_variant LOW 534C>T Asn178Asn
M0189780 JGHAGDFN_00001 880 3 Gut 0.09 protein_coding missense_variant MODERATE 539C>T Ala180Val
M0189781 JGHAGDFN_00001 924 3 Gut 0.09 protein_coding synonymous_variant LOW 583C>T Leu195Leu
M0189782 JGHAGDFN_00001 941 3 Gut 0.09 protein_coding synonymous_variant LOW 600C>T Ala200Ala
M0189783 JGHAGDFN_00001 966 3 Gut 0.09 protein_coding missense_variant MODERATE 625G>A Val209Ile
M0189784 JGHAGDFN_00001 968 3 Gut 0.09 protein_coding synonymous_variant LOW 627C>T Val209Val
M0189785 JGHAGDFN_00001 971 3 Gut 0.09 protein_coding synonymous_variant LOW 630C>T Val210Val
M0189786 JGHAGDFN_00001 995 3 Gut 0.09 protein_coding synonymous_variant LOW 654C>T Val218Val
M0189787 JGHAGDFN_00001 1131 3 Gut 0.09 protein_coding missense_variant MODERATE 790A>C Lys264Gln
M0189788 JGHAGDFN_00001 1179 3 Gut 0.09 protein_coding missense_variant MODERATE 838C>G Gln280Glu
M0189789 JGHAGDFN_00002 1385 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -23G>A None
M0189790 JGHAGDFN_00002 1454 3 Gut 0.09 protein_coding missense_variant MODERATE 47C>T Ala16Val
M0189791 JGHAGDFN_00002 1461 3 Gut 0.09 protein_coding synonymous_variant LOW 54T>A Ala18Ala
M0189792 JGHAGDFN_00002 1464 3 Gut 0.09 protein_coding synonymous_variant LOW 57G>T Ala19Ala
M0189793 JGHAGDFN_00002 1497 3 Gut 0.09 protein_coding synonymous_variant LOW 90C>T Phe30Phe
M0189794 JGHAGDFN_00002 1500 3 Gut 0.09 protein_coding synonymous_variant LOW 93G>A Ala31Ala
M0189795 JGHAGDFN_00002 1586 3 Gut 0.09 protein_coding missense_variant MODERATE 179G>A Arg60Lys
M0189796 JGHAGDFN_00002 1671 3 Gut 0.09 protein_coding synonymous_variant LOW 264A>G Gln88Gln
M0189797 JGHAGDFN_00002 1674 3 Gut 0.09 protein_coding synonymous_variant LOW 267T>C Gly89Gly
M0189798 JGHAGDFN_00002 1675 3 Gut 0.09 protein_coding missense_variant MODERATE 268T>C Tyr90His
M0189799 JGHAGDFN_00002 1872 3 Gut 0.09 protein_coding synonymous_variant LOW 465T>C Gly155Gly
M0189800 JGHAGDFN_00002 1904 3 Gut 0.09 protein_coding missense_variant MODERATE 497G>A Arg166His
M0189801 JGHAGDFN_00003 1930 3 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -45T>A None
M0189802 JGHAGDFN_00003 1985 3 Gut 0.09 protein_coding missense_variant MODERATE 11G>A Arg4Lys
M0189803 JGHAGDFN_00003 1991 3 Gut 0.09 protein_coding missense_variant MODERATE 17T>C Val6Ala
M0189804 JGHAGDFN_00003 1998 3 Gut 0.09 protein_coding synonymous_variant LOW 24T>C Tyr8Tyr
M0189805 JGHAGDFN_00003 2001 3 Gut 0.09 protein_coding synonymous_variant LOW 27G>A Glu9Glu
M0189806 JGHAGDFN_00003 2016 3 Gut 0.09 protein_coding synonymous_variant LOW 42A>T Ile14Ile
M0189807 JGHAGDFN_00003 2022 3 Gut 0.09 protein_coding synonymous_variant LOW 48C>T Arg16Arg
M0189808 JGHAGDFN_00003 2035 3 Gut 0.09 protein_coding missense_variant MODERATE 61T>C Phe21Leu
M0189809 JGHAGDFN_00003 2052 3 Gut 0.09 protein_coding synonymous_variant LOW 78A>G Ala26Ala
M0189810 JGHAGDFN_00003 2073 3 Gut 0.09 protein_coding synonymous_variant LOW 99T>C Ala33Ala
M0189811 JGHAGDFN_00003 2106 3 Gut 0.09 protein_coding synonymous_variant LOW 132A>G Glu44Glu
M0189812 JGHAGDFN_00003 2109 3 Gut 0.09 protein_coding synonymous_variant LOW 135T>C Arg45Arg
M0189813 JGHAGDFN_00003 2143 3 Gut 0.09 protein_coding missense_variant MODERATE 169A>G Met57Val
M0189814 JGHAGDFN_00003 2152 3 Gut 0.09 protein_coding missense_variant MODERATE 178A>G Lys60Glu
M0189815 JGHAGDFN_00003 2157 3 Gut 0.09 protein_coding synonymous_variant LOW 183C>T Asn61Asn
M0189816 JGHAGDFN_00003 2271 3 Gut 0.09 protein_coding synonymous_variant LOW 297C>T Ala99Ala
M0189817 JGHAGDFN_00003 2286 3 Gut 0.09 protein_coding synonymous_variant LOW 312C>T Cys104Cys
M0189818 JGHAGDFN_00003 2346 3 Gut 0.09 protein_coding synonymous_variant LOW 372A>G Ala124Ala
M0189819 JGHAGDFN_00003 2362 3 Gut 0.09 protein_coding missense_variant MODERATE 388G>A Val130Met
M0189820 JGHAGDFN_00003 2427 3 Gut 0.09 protein_coding synonymous_variant LOW 453T>C Ile151Ile
M0189821 JGHAGDFN_00003 2475 3 Gut 0.09 protein_coding synonymous_variant LOW 501C>T Thr167Thr
M0189822 JGHAGDFN_00003 2484 3 Gut 0.09 protein_coding synonymous_variant LOW 510G>A Gly170Gly
M0189823 JGHAGDFN_00003 2502 3 Gut 0.09 protein_coding synonymous_variant LOW 528T>C Tyr176Tyr
M0189824 JGHAGDFN_00003 2523 3 Gut 0.09 protein_coding synonymous_variant LOW 549A>G Ser183Ser
M0189825 JGHAGDFN_00003 2534 3 Gut 0.09 protein_coding missense_variant MODERATE 560T>C Leu187Ser
M0189826 JGHAGDFN_00003 2544 3 Gut 0.09 protein_coding synonymous_variant LOW 570T>C Leu190Leu
M0189827 JGHAGDFN_00003 2565 3 Gut 0.09 protein_coding synonymous_variant LOW 591G>T Ala197Ala
M0189828 JGHAGDFN_00003 2728 3 Gut 0.09 protein_coding missense_variant MODERATE 754T>C Phe252Leu
M0189829 JGHAGDFN_00003 2841 3 Gut 0.09 protein_coding synonymous_variant LOW 867G>A Arg289Arg
M0189830 JGHAGDFN_00003 2844 3 Gut 0.09 protein_coding synonymous_variant LOW 870G>C Arg290Arg
M0189831 JGHAGDFN_00003 2848 3 Gut 0.09 protein_coding missense_variant MODERATE 874A>G Met292Val
M0189832 JGHAGDFN_00004 2915 3 Gut 0.09 protein_coding synonymous_variant LOW 60C>T Thr20Thr
M0189833 JGHAGDFN_00004 2924 3 Gut 0.09 protein_coding synonymous_variant LOW 69G>A Ala23Ala
M0189834 JGHAGDFN_00004 2949 3 Gut 0.09 protein_coding synonymous_variant LOW 94C>T Leu32Leu
M0189835 JGHAGDFN_00004 2966 3 Gut 0.09 protein_coding synonymous_variant LOW 111T>A Gly37Gly
M0189836 JGHAGDFN_00004 2987 3 Gut 0.09 protein_coding synonymous_variant LOW 132C>T Val44Val
M0189837 JGHAGDFN_00004 2990 3 Gut 0.09 protein_coding synonymous_variant LOW 135G>A Arg45Arg
M0189838 JGHAGDFN_00004 2997 3 Gut 0.09 protein_coding missense_variant MODERATE 142G>A Ala48Thr
M0189839 JGHAGDFN_00004 3014 3 Gut 0.09 protein_coding synonymous_variant LOW 159C>T Asp53Asp
M0189840 JGHAGDFN_00004 3131 3 Gut 0.09 protein_coding synonymous_variant LOW 276T>C Asp92Asp
M0189841 JGHAGDFN_00004 3137 3 Gut 0.09 protein_coding synonymous_variant LOW 282C>G Pro94Pro
M0189842 JGHAGDFN_00004 3138 3 Gut 0.09 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0189843 JGHAGDFN_00004 3168 3 Gut 0.09 protein_coding missense_variant MODERATE 313A>G Thr105Ala
M0189844 JGHAGDFN_00004 3176 3 Gut 0.09 protein_coding synonymous_variant LOW 321C>T Val107Val
M0189845 JGHAGDFN_00004 3188 3 Gut 0.09 protein_coding synonymous_variant LOW 333G>A Ala111Ala
M0189846 JGHAGDFN_00004 3220 3 Gut 0.09 protein_coding missense_variant MODERATE 365C>T Ser122Leu
M0189847 JGHAGDFN_00004 3221 3 Gut 0.09 protein_coding synonymous_variant LOW 366A>G Ser122Ser
M0189848 JGHAGDFN_00004 3230 3 Gut 0.09 protein_coding synonymous_variant LOW 375G>A Ala125Ala
M0189849 JGHAGDFN_00004 3231 3 Gut 0.09 protein_coding missense_variant MODERATE 376A>G Ile126Val
M0189850 JGHAGDFN_00004 3236 3 Gut 0.09 protein_coding synonymous_variant LOW 381A>G Thr127Thr
M0189851 JGHAGDFN_00004 3245 3 Gut 0.09 protein_coding synonymous_variant LOW 390G>A Ser130Ser
M0189852 JGHAGDFN_00004 3566 3 Gut 0.09 protein_coding synonymous_variant LOW 711C>T Ile237Ile
M0189853 JGHAGDFN_00004 3575 3 Gut 0.09 protein_coding synonymous_variant LOW 720A>G Glu240Glu
M0189854 JGHAGDFN_00004 3581 3 Gut 0.09 protein_coding synonymous_variant LOW 726T>C Ile242Ile
M0189855 JGHAGDFN_00004 3585 3 Gut 0.09 protein_coding missense_variant MODERATE 730A>G Thr244Ala
M0189856 JGHAGDFN_00004 3598 3 Gut 0.09 protein_coding missense_variant MODERATE 743G>T Gly248Val
M0189857 JGHAGDFN_00004 3604 3 Gut 0.09 protein_coding missense_variant MODERATE 749T>C Phe250Ser
M0189858 JGHAGDFN_00004 3605 3 Gut 0.09 protein_coding missense_variant MODERATE 750T>A Phe250Leu
M0189859 JGHAGDFN_00004 3613 3 Gut 0.09 protein_coding missense_variant MODERATE 758T>G Val253Gly
M0189860 JGHAGDFN_00004 3615 3 Gut 0.09 protein_coding missense_variant MODERATE 760A>C Ile254Leu
M0189861 JGHAGDFN_00005 3703 3 Gut 0.09 protein_coding synonymous_variant LOW 15T>A Val5Val
M0189862 JGHAGDFN_00005 3708 3 Gut 0.09 protein_coding missense_variant MODERATE 20A>G Asp7Gly
M0189863 JGHAGDFN_00005 3727 3 Gut 0.09 protein_coding synonymous_variant LOW 39C>T Gly13Gly
M0189864 JGHAGDFN_00005 3832 3 Gut 0.09 protein_coding synonymous_variant LOW 144C>T Val48Val
M0189865 JGHAGDFN_00005 3838 3 Gut 0.09 protein_coding synonymous_variant LOW 150A>G Gly50Gly
M0189866 JGHAGDFN_00005 3974 3 Gut 0.09 protein_coding missense_variant MODERATE 286G>A Glu96Lys
M0189867 JGHAGDFN_00005 4183 3 Gut 0.09 protein_coding synonymous_variant LOW 495G>T Val165Val
M0189868 JGHAGDFN_00005 4228 3 Gut 0.09 protein_coding synonymous_variant LOW 540C>T Arg180Arg
M0189869 JGHAGDFN_00005 4270 3 Gut 0.09 protein_coding synonymous_variant LOW 582G>A Glu194Glu
M0189870 JGHAGDFN_00006 4557 3 Gut 0.09 protein_coding synonymous_variant LOW 219A>G Glu73Glu
M0189871 JGHAGDFN_00006 4558 3 Gut 0.09 protein_coding synonymous_variant LOW 220C>T Leu74Leu
M0189872 JGHAGDFN_00006 4560 3 Gut 0.09 protein_coding synonymous_variant LOW 222A>G Leu74Leu
M0189873 JGHAGDFN_00006 4761 3 Gut 0.09 protein_coding synonymous_variant LOW 423C>T Asp141Asp
M0189874 JGHAGDFN_00006 4767 3 Gut 0.09 protein_coding synonymous_variant LOW 429G>A Val143Val
M0189875 JGHAGDFN_00006 4791 3 Gut 0.09 protein_coding synonymous_variant LOW 453G>A Gln151Gln
M0189876 JGHAGDFN_00006 4794 3 Gut 0.09 protein_coding synonymous_variant LOW 456A>C Ala152Ala
M0189877 JGHAGDFN_00006 4806 3 Gut 0.09 protein_coding synonymous_variant LOW 468G>T Leu156Leu
M0189878 JGHAGDFN_00006 4827 3 Gut 0.09 protein_coding synonymous_variant LOW 489T>C Ala163Ala
M0189879 JGHAGDFN_00006 4830 3 Gut 0.09 protein_coding synonymous_variant LOW 492A>G Val164Val
M0189880 JGHAGDFN_00006 4831 3 Gut 0.09 protein_coding missense_variant MODERATE 493C>G Gln165Glu
M0189881 JGHAGDFN_00006 4842 3 Gut 0.09 protein_coding synonymous_variant LOW 504G>A Ala168Ala
M0189882 JGHAGDFN_00006 4845 3 Gut 0.09 protein_coding synonymous_variant LOW 507G>A Glu169Glu
M0189883 JGHAGDFN_00006 4866 3 Gut 0.09 protein_coding synonymous_variant LOW 528C>T Phe176Phe
M0189884 JGHAGDFN_00006 4875 3 Gut 0.09 protein_coding synonymous_variant LOW 537A>G Gln179Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term