Annotation Categories of the Plasmid Cluster
Summary of the plasmid cluster
Basic Information about the Plasmid Cluster
Cluster Information |
Plasmid Cluster ID |
C956 |
Reference Plasmid |
NZ_CP084013.1 |
Reference Plasmid Size |
169194 |
Reference Plasmid GC Content |
0.57 |
Reference Plasmid Mobility Type |
non-mobilizable |
Mutation sites in the plasmid cluster
The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..
mutid |
gname |
pos |
count |
tissue |
frequnt |
biotype |
consequence |
impact |
nucchange |
aachange |
M0189897 |
PLHCLJLP_00042 |
37437 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
59A>G |
Lys20Arg |
M0189898 |
PLHCLJLP_00044 |
37986 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
21C>G |
Gly7Gly |
M0189899 |
PLHCLJLP_00044 |
38126 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
161G>A |
Arg54Lys |
M0189900 |
PLHCLJLP_00044 |
38278 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
313G>C |
Gly105Arg |
M0189901 |
PLHCLJLP_00044 |
38279 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
314G>A |
Gly105Glu |
M0189902 |
PLHCLJLP_00044 |
38304 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
339G>A |
Met113Ile |
M0189903 |
PLHCLJLP_00044 |
38323 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
358A>G |
Ile120Val |
M0189904 |
PLHCLJLP_00044 |
38406 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
441C>T |
Gly147Gly |
M0189905 |
PLHCLJLP_00044 |
38408 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
443T>C |
Val148Ala |
M0189906 |
PLHCLJLP_00044 |
38413 |
13 |
Gut |
0.27 |
protein_coding |
missense_variant |
MODERATE |
448G>A |
Ala150Thr |
M0189907 |
PLHCLJLP_00044 |
38546 |
11 |
Gut |
0.23 |
protein_coding |
missense_variant |
MODERATE |
581G>A |
Arg194Lys |
M0189908 |
PLHCLJLP_00044 |
38575 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
610T>G |
Ser204Ala |
M0189909 |
PLHCLJLP_00044 |
39385 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
1420G>A |
Val474Ile |
M0189910 |
PLHCLJLP_00044 |
39447 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1482A>G |
Ser494Ser |
M0189911 |
PLHCLJLP_00044 |
39466 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
1501A>G |
Asn501Asp |
M0189912 |
PLHCLJLP_00044 |
39498 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1533A>G |
Leu511Leu |
M0189913 |
PLHCLJLP_00044 |
39562 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
1597C>A |
Leu533Ile |
M0189914 |
PLHCLJLP_00044 |
39607 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
1642G>A |
Glu548Lys |
M0189915 |
PLHCLJLP_00044 |
39608 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
1643A>C |
Glu548Ala |
M0189916 |
PLHCLJLP_00044 |
39615 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1650A>G |
Lys550Lys |
M0189917 |
PLHCLJLP_00044 |
39690 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1725A>G |
Gln575Gln |
M0189918 |
PLHCLJLP_00044 |
39698 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
1733C>G |
Thr578Arg |
M0189919 |
PLHCLJLP_00044 |
39885 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
1920A>G |
Lys640Lys |
M0189920 |
PLHCLJLP_00044 |
39968 |
9 |
Gut |
0.19 |
protein_coding |
missense_variant |
MODERATE |
2003C>G |
Ala668Gly |
M0189921 |
PLHCLJLP_00044 |
40179 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2214T>C |
Gly738Gly |
M0189922 |
PLHCLJLP_00044 |
40180 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2215T>A |
Ser739Thr |
M0189923 |
PLHCLJLP_00044 |
40181 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2216C>G |
Ser739Cys |
M0189924 |
PLHCLJLP_00044 |
40425 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
2460A>G |
Glu820Glu |
M0189925 |
PLHCLJLP_00044 |
40461 |
10 |
Gut |
0.21 |
protein_coding |
synonymous_variant |
LOW |
2496G>A |
Ala832Ala |
M0189926 |
PLHCLJLP_00044 |
40482 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
2517G>C |
Thr839Thr |
M0189927 |
PLHCLJLP_00044 |
40485 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
2520C>G |
Leu840Leu |
M0189928 |
PLHCLJLP_00044 |
40488 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
2523C>G |
Ser841Ser |
M0189929 |
PLHCLJLP_00044 |
40833 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2868A>G |
Gly956Gly |
M0189930 |
PLHCLJLP_00044 |
41478 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
3513T>G |
Ala1171Ala |
M0189931 |
PLHCLJLP_00044 |
41480 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
3515T>C |
Val1172Ala |
M0189932 |
PLHCLJLP_00045 |
42635 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
51T>C |
Val17Val |
M0189933 |
PLHCLJLP_00045 |
43128 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
544A>G |
Thr182Ala |
M0189934 |
PLHCLJLP_00045 |
43541 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
957C>T |
His319His |
M0189935 |
PLHCLJLP_00045 |
43547 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
963C>T |
Ser321Ser |
M0189936 |
PLHCLJLP_00046 |
43571 |
11 |
Gut |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-11A>G |
None |
M0189937 |
PLHCLJLP_00046 |
43750 |
12 |
Gut |
0.25 |
protein_coding |
missense_variant |
MODERATE |
169A>G |
Asn57Asp |
M0189938 |
PLHCLJLP_00046 |
43946 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
365C>A |
Ala122Asp |
M0189939 |
PLHCLJLP_00046 |
43974 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
393G>A |
Ala131Ala |
M0189940 |
PLHCLJLP_00046 |
43978 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
397G>A |
Gly133Ser |
M0189941 |
PLHCLJLP_00046 |
43979 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
398G>A |
Gly133Asp |
M0189942 |
PLHCLJLP_00046 |
44049 |
9 |
Gut |
0.19 |
protein_coding |
synonymous_variant |
LOW |
468T>C |
Thr156Thr |
M0189943 |
PLHCLJLP_00046 |
44076 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
495G>C |
Ala165Ala |
M0189944 |
PLHCLJLP_00046 |
44093 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
512C>A |
Ala171Asp |
M0189945 |
PLHCLJLP_00046 |
44110 |
9 |
Gut |
0.19 |
protein_coding |
missense_variant |
MODERATE |
529G>A |
Asp177Asn |
M0189946 |
PLHCLJLP_00046 |
44185 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
604G>A |
Ala202Thr |
M0189947 |
PLHCLJLP_00046 |
44232 |
9 |
Gut |
0.19 |
protein_coding |
synonymous_variant |
LOW |
651T>C |
Ala217Ala |
M0189948 |
PLHCLJLP_00046 |
44270 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
689G>A |
Arg230Lys |
M0189949 |
PLHCLJLP_00046 |
44478 |
9 |
Gut |
0.19 |
protein_coding |
synonymous_variant |
LOW |
897G>A |
Gln299Gln |
M0189950 |
PLHCLJLP_00046 |
44497 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
916C>A |
Arg306Arg |
M0189951 |
PLHCLJLP_00046 |
44531 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
950G>A |
Arg317Gln |
M0189952 |
PLHCLJLP_00046 |
44602 |
9 |
Gut |
0.19 |
protein_coding |
missense_variant |
MODERATE |
1021G>A |
Glu341Lys |
M0189953 |
PLHCLJLP_00046 |
44628 |
11 |
Gut |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1047T>C |
Asp349Asp |
M0189954 |
PLHCLJLP_00046 |
44634 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
1053G>C |
Ala351Ala |
M0189955 |
PLHCLJLP_00046 |
44635 |
11 |
Gut |
0.23 |
protein_coding |
missense_variant |
MODERATE |
1054G>A |
Ala352Thr |
M0189956 |
PLHCLJLP_00046 |
44676 |
12 |
Gut |
0.25 |
protein_coding |
synonymous_variant |
LOW |
1095T>C |
Asp365Asp |
M0189957 |
PLHCLJLP_00046 |
44895 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
1314C>T |
Gly438Gly |
M0189958 |
PLHCLJLP_00046 |
45530 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
1949A>G |
Gln650Arg |
M0189959 |
PLHCLJLP_00046 |
45531 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
1950A>G |
Gln650Gln |
M0189960 |
PLHCLJLP_00046 |
45551 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1970A>G |
Gln657Arg |
M0189961 |
PLHCLJLP_00046 |
45777 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2196A>G |
Ala732Ala |
M0189962 |
PLHCLJLP_00046 |
46022 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2441C>A |
Ala814Asp |
M0189963 |
PLHCLJLP_00046 |
46099 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
2518A>G |
Thr840Ala |
M0189964 |
PLHCLJLP_00046 |
46189 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2608A>G |
Thr870Ala |
M0189965 |
PLHCLJLP_00046 |
46201 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2620T>G |
Ser874Ala |
M0189966 |
PLHCLJLP_00046 |
46203 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2622C>G |
Ser874Ser |
M0189967 |
PLHCLJLP_00046 |
46235 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2654A>C |
Glu885Ala |
M0189968 |
PLHCLJLP_00046 |
46257 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2676A>G |
Lys892Lys |
M0189969 |
PLHCLJLP_00046 |
46461 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2880T>C |
Ala960Ala |
M0189970 |
PLHCLJLP_00046 |
46548 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2967T>C |
Gly989Gly |
M0189971 |
PLHCLJLP_00046 |
46551 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2970T>C |
Ala990Ala |
M0189972 |
PLHCLJLP_00046 |
46584 |
10 |
Gut |
0.21 |
protein_coding |
synonymous_variant |
LOW |
3003A>G |
Lys1001Lys |
M0189973 |
PLHCLJLP_00147 |
117445 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2937C>T |
His979His |
M0189974 |
PLHCLJLP_00147 |
117523 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
3015C>T |
Ile1005Ile |
M0189975 |
PLHCLJLP_00147 |
117613 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
3105A>G |
Gly1035Gly |
M0189976 |
PLHCLJLP_00147 |
117745 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
3237T>C |
Ile1079Ile |
M0189977 |
PLHCLJLP_00147 |
117826 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
3318C>T |
Ala1106Ala |
M0189978 |
PLHCLJLP_00147 |
117981 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
3473A>G |
Tyr1158Cys |
M0189979 |
PLHCLJLP_00147 |
118060 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
3552G>A |
Gly1184Gly |
M0189980 |
PLHCLJLP_00147 |
118195 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
3687T>C |
Asn1229Asn |
M0189981 |
PLHCLJLP_00147 |
118291 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
3783C>T |
Gly1261Gly |
M0189982 |
PLHCLJLP_00148 |
119510 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
676G>A |
Glu226Lys |
M0189983 |
PLHCLJLP_00149 |
119928 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
267C>T |
Ser89Ser |
M0189984 |
PLHCLJLP_00149 |
119994 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
333A>C |
Gly111Gly |
M0189985 |
PLHCLJLP_00149 |
120024 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
363T>C |
Gly121Gly |
M0189986 |
PLHCLJLP_00149 |
120136 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
475G>A |
Glu159Lys |
M0189987 |
PLHCLJLP_00149 |
120318 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
657T>C |
Tyr219Tyr |
M0189988 |
PLHCLJLP_00149 |
120388 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
727C>A |
Arg243Ser |
M0189989 |
PLHCLJLP_00149 |
120552 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
891A>G |
Gly297Gly |
M0189990 |
PLHCLJLP_00150 |
120993 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
939A>G |
Gly313Gly |
M0189991 |
PLHCLJLP_00150 |
121013 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
919A>G |
Ile307Val |
M0189992 |
PLHCLJLP_00150 |
121395 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
537G>A |
Thr179Thr |
M0189993 |
PLHCLJLP_00150 |
121650 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
282G>A |
Thr94Thr |
M0189994 |
PLHCLJLP_00150 |
121698 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
234G>T |
Leu78Leu |
M0189995 |
PLHCLJLP_00150 |
121804 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
128T>C |
Val43Ala |
M0189996 |
PLHCLJLP_00150 |
121824 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
108C>T |
Thr36Thr |
M0189997 |
PLHCLJLP_00150 |
122040 |
8 |
Gut |
0.17 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-109A>C |
None |
M0189998 |
PLHCLJLP_00150 |
122041 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-110A>C |
None |
M0189999 |
PLHCLJLP_00151 |
122061 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
449A>T |
Asp150Val |
M0190000 |
PLHCLJLP_00151 |
122064 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
446T>A |
Val149Asp |
M0190001 |
PLHCLJLP_00151 |
122070 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
440C>T |
Ser147Leu |
M0190002 |
PLHCLJLP_00151 |
122071 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
439T>G |
Ser147Ala |
M0190003 |
PLHCLJLP_00151 |
122072 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
438T>C |
Asn146Asn |
M0190004 |
PLHCLJLP_00151 |
122090 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
420G>A |
Glu140Glu |
M0190005 |
PLHCLJLP_00151 |
122338 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
172A>G |
Ile58Val |
M0190006 |
PLHCLJLP_00152 |
122880 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1054T>C |
Ser352Pro |
M0190007 |
PLHCLJLP_00152 |
123052 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
882T>C |
Pro294Pro |
M0190008 |
PLHCLJLP_00156 |
125412 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
534A>G |
Pro178Pro |
M0190009 |
PLHCLJLP_00156 |
125849 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
97T>G |
Ser33Ala |
M0190010 |
PLHCLJLP_00150 |
125948 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4017C>T |
None |
M0190011 |
PLHCLJLP_00150 |
125949 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4018C>T |
None |
M0190012 |
PLHCLJLP_00150 |
125966 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4035T>C |
None |
M0190013 |
PLHCLJLP_00150 |
126048 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4117A>G |
None |
M0190014 |
PLHCLJLP_00150 |
126077 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4146T>A |
None |
M0190015 |
PLHCLJLP_00150 |
126088 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4157A>G |
None |
M0190016 |
PLHCLJLP_00150 |
126089 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4158C>A |
None |
M0190017 |
PLHCLJLP_00150 |
126098 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4167A>T |
None |
M0190018 |
PLHCLJLP_00150 |
126108 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4177T>G |
None |
M0190019 |
PLHCLJLP_00150 |
126140 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4209G>A |
None |
M0190020 |
PLHCLJLP_00150 |
126160 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4229G>A |
None |
M0190021 |
PLHCLJLP_00150 |
126174 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4243T>C |
None |
M0190022 |
PLHCLJLP_00150 |
126254 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4323C>A |
None |
M0190023 |
PLHCLJLP_00150 |
126255 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4324A>G |
None |
M0190024 |
PLHCLJLP_00150 |
126256 |
7 |
Gut |
0.15 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4325A>C |
None |
M0190025 |
PLHCLJLP_00150 |
126377 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4446A>G |
None |
M0190026 |
PLHCLJLP_00062 |
59688 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
214T>C |
Phe72Leu |
M0190027 |
PLHCLJLP_00065 |
60644 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
221A>C |
Asn74Thr |
M0190028 |
PLHCLJLP_00068 |
61993 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
401T>C |
Val134Ala |
M0190029 |
PLHCLJLP_00068 |
62255 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
139G>A |
Ala47Thr |
M0190030 |
PLHCLJLP_00068 |
62326 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
68T>C |
Val23Ala |
M0190031 |
PLHCLJLP_00069 |
62424 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
268T>C |
Phe90Leu |
M0190032 |
PLHCLJLP_00069 |
62520 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
172C>A |
Arg58Arg |
M0190033 |
PLHCLJLP_00069 |
62602 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
90G>A |
Ala30Ala |
M0190034 |
PLHCLJLP_00071 |
63253 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
79A>G |
Ser27Gly |
M0190035 |
PLHCLJLP_00071 |
63257 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
75A>C |
Ala25Ala |
M0190036 |
PLHCLJLP_00071 |
63325 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
7C>T |
His3Tyr |
M0190037 |
PLHCLJLP_00058 |
63365 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4978C>T |
None |
M0190038 |
PLHCLJLP_00072 |
63437 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
126A>G |
Lys42Lys |
M0190039 |
PLHCLJLP_00059 |
63662 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4848A>G |
None |
M0190040 |
PLHCLJLP_00059 |
63739 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4925C>T |
None |
M0190041 |
PLHCLJLP_00073 |
63793 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
23A>C |
Asp8Ala |
M0190042 |
PLHCLJLP_00073 |
64008 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
238C>A |
Leu80Ile |
M0190043 |
PLHCLJLP_00073 |
64022 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
252C>A |
Ala84Ala |
M0190044 |
PLHCLJLP_00073 |
64031 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
261T>G |
Asp87Glu |
M0190045 |
PLHCLJLP_00073 |
64095 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
325G>A |
Gly109Ser |
M0190046 |
PLHCLJLP_00073 |
64667 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
897A>C |
Ala299Ala |
M0190047 |
PLHCLJLP_00073 |
64673 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
903T>C |
Arg301Arg |
M0190048 |
PLHCLJLP_00073 |
64682 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
912T>G |
Asp304Glu |
M0190049 |
PLHCLJLP_00075 |
66129 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
672G>T |
Thr224Thr |
M0190050 |
PLHCLJLP_00075 |
66132 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
675T>C |
Phe225Phe |
M0190051 |
PLHCLJLP_00075 |
66159 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
702T>C |
Ile234Ile |
M0190052 |
PLHCLJLP_00068 |
67057 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4664T>G |
None |
M0190053 |
PLHCLJLP_00068 |
67059 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4666A>G |
None |
M0190054 |
PLHCLJLP_00068 |
67084 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4691G>A |
None |
M0190055 |
PLHCLJLP_00068 |
67085 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4692T>C |
None |
M0190056 |
PLHCLJLP_00068 |
67176 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4783A>G |
None |
M0190057 |
PLHCLJLP_00068 |
67181 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4788A>C |
None |
M0190058 |
PLHCLJLP_00082 |
69364 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
151A>G |
Ser51Gly |
M0190059 |
PLHCLJLP_00087 |
73110 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1220C>T |
Pro407Leu |
M0190060 |
PLHCLJLP_00088 |
73676 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
243T>C |
Ala81Ala |
M0190061 |
PLHCLJLP_00088 |
73873 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
46T>C |
Ser16Pro |
M0190062 |
PLHCLJLP_00088 |
73878 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
41T>C |
Val14Ala |
M0190063 |
PLHCLJLP_00089 |
74133 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
459C>T |
Ile153Ile |
M0190064 |
PLHCLJLP_00089 |
74223 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
369T>C |
Gly123Gly |
M0190065 |
PLHCLJLP_00089 |
74246 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
346G>A |
Ala116Thr |
M0190066 |
PLHCLJLP_00089 |
74256 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
336T>C |
Tyr112Tyr |
M0190067 |
PLHCLJLP_00089 |
74292 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
300T>C |
Asn100Asn |
M0190068 |
PLHCLJLP_00089 |
74411 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
181C>G |
Arg61Gly |
M0190069 |
PLHCLJLP_00089 |
74412 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
180C>G |
Asp60Glu |
M0190070 |
PLHCLJLP_00089 |
74419 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
173A>G |
Gln58Arg |
M0190071 |
PLHCLJLP_00089 |
74446 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
146C>T |
Ala49Val |
M0190072 |
PLHCLJLP_00089 |
74448 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
144G>A |
Thr48Thr |
M0190073 |
PLHCLJLP_00089 |
74458 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
134G>A |
Gly45Glu |
M0190074 |
PLHCLJLP_00089 |
74466 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
126T>C |
Ser42Ser |
M0190075 |
PLHCLJLP_00089 |
74502 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
90A>G |
Thr30Thr |
M0190076 |
PLHCLJLP_00088 |
74622 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-704T>C |
None |
M0190077 |
PLHCLJLP_00088 |
74625 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-707A>C |
None |
M0190078 |
PLHCLJLP_00088 |
74705 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-787G>A |
None |
M0190079 |
PLHCLJLP_00090 |
74729 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
291T>C |
Phe97Phe |
M0190080 |
PLHCLJLP_00095 |
78192 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
417C>G |
Gly139Gly |
M0190081 |
PLHCLJLP_00088 |
78664 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4746A>G |
None |
M0190082 |
PLHCLJLP_00096 |
78733 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
69G>A |
Gln23Gln |
M0190083 |
PLHCLJLP_00097 |
79206 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
186T>C |
Ser62Ser |
M0190084 |
PLHCLJLP_00090 |
79900 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4881C>T |
None |
M0190085 |
PLHCLJLP_00100 |
80439 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
294A>G |
Arg98Arg |
M0190086 |
PLHCLJLP_00100 |
80865 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
720T>C |
Ala240Ala |
M0190087 |
PLHCLJLP_00100 |
81284 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1139G>A |
Ser380Asn |
M0190088 |
PLHCLJLP_00101 |
81721 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
81T>C |
Ile27Ile |
M0190089 |
PLHCLJLP_00102 |
82098 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
144T>C |
Pro48Pro |
M0190090 |
PLHCLJLP_00102 |
82102 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
148C>A |
Pro50Thr |
M0190091 |
PLHCLJLP_00102 |
82429 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
475C>T |
Arg159Cys |
M0190092 |
PLHCLJLP_00102 |
82430 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
476G>C |
Arg159Pro |
M0190093 |
PLHCLJLP_00102 |
82431 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
477C>T |
Arg159Arg |
M0190094 |
PLHCLJLP_00103 |
82809 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
246T>C |
Phe82Phe |
M0190095 |
PLHCLJLP_00103 |
82905 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
342A>C |
Arg114Arg |
M0190096 |
PLHCLJLP_00103 |
82971 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
408T>C |
Gly136Gly |
M0190097 |
PLHCLJLP_00103 |
83015 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
452C>A |
Thr151Asn |
M0190098 |
PLHCLJLP_00103 |
83029 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
466G>A |
Gly156Ser |
M0190099 |
PLHCLJLP_00103 |
83030 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
467G>A |
Gly156Asp |
M0190100 |
PLHCLJLP_00095 |
83044 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4436G>A |
None |
M0190101 |
PLHCLJLP_00095 |
83046 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4438C>T |
None |
M0190102 |
PLHCLJLP_00095 |
83066 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4458C>A |
None |
M0190103 |
PLHCLJLP_00104 |
83803 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
696G>A |
Ser232Ser |
M0190104 |
PLHCLJLP_00104 |
83815 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
708C>A |
Gly236Gly |
M0190105 |
PLHCLJLP_00104 |
83827 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
720A>C |
Lys240Asn |
M0190106 |
PLHCLJLP_00104 |
83899 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
792G>A |
Ala264Ala |
M0190107 |
PLHCLJLP_00104 |
83911 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
804A>T |
Ala268Ala |
M0190108 |
PLHCLJLP_00104 |
83923 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
816G>C |
Val272Val |
M0190109 |
PLHCLJLP_00098 |
83970 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4333T>C |
None |
M0190110 |
PLHCLJLP_00098 |
84134 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4497A>G |
None |
M0190111 |
PLHCLJLP_00098 |
84469 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4832A>G |
None |
M0190112 |
PLHCLJLP_00098 |
84475 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4838T>C |
None |
M0190113 |
PLHCLJLP_00098 |
84491 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4854A>G |
None |
M0190114 |
PLHCLJLP_00098 |
84493 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4856C>T |
None |
M0190115 |
PLHCLJLP_00098 |
84578 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4941C>T |
None |
M0190116 |
PLHCLJLP_00098 |
84591 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4954A>G |
None |
M0190117 |
PLHCLJLP_00098 |
84604 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4967A>C |
None |
M0190118 |
PLHCLJLP_00106 |
84983 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2758G>A |
Gly920Arg |
M0190119 |
PLHCLJLP_00106 |
85016 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2725C>T |
Leu909Leu |
M0190120 |
PLHCLJLP_00106 |
85017 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2724G>A |
Glu908Glu |
M0190121 |
PLHCLJLP_00106 |
85021 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2720T>G |
Leu907Arg |
M0190122 |
PLHCLJLP_00106 |
86355 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1386A>C |
Arg462Ser |
M0190123 |
PLHCLJLP_00106 |
86357 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1384A>C |
Arg462Arg |
M0190124 |
PLHCLJLP_00106 |
86358 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1383A>C |
Ala461Ala |
M0190125 |
PLHCLJLP_00106 |
86361 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1380A>C |
Val460Val |
M0190126 |
PLHCLJLP_00106 |
86364 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1377C>G |
Ala459Ala |
M0190127 |
PLHCLJLP_00106 |
86370 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1371A>G |
Ala457Ala |
M0190128 |
PLHCLJLP_00106 |
86487 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1254T>C |
Asn418Asn |
M0190129 |
PLHCLJLP_00106 |
86499 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1242C>T |
Arg414Arg |
M0190130 |
PLHCLJLP_00106 |
86514 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1227G>C |
Thr409Thr |
M0190131 |
PLHCLJLP_00106 |
86566 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1175G>A |
Gly392Asp |
M0190132 |
PLHCLJLP_00106 |
86721 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1020C>A |
Gly340Gly |
M0190133 |
PLHCLJLP_00106 |
86724 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1017A>G |
Lys339Lys |
M0190134 |
PLHCLJLP_00106 |
86730 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1011A>G |
Arg337Arg |
M0190135 |
PLHCLJLP_00106 |
86953 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
788C>T |
Ala263Val |
M0190136 |
PLHCLJLP_00106 |
86993 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
748C>G |
Pro250Ala |
M0190137 |
PLHCLJLP_00106 |
86996 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
745A>T |
Thr249Ser |
M0190138 |
PLHCLJLP_00106 |
87249 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
492G>T |
Glu164Asp |
M0190139 |
PLHCLJLP_00106 |
87251 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
490G>A |
Glu164Lys |
M0190140 |
PLHCLJLP_00106 |
87361 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
380A>G |
His127Arg |
M0190141 |
PLHCLJLP_00106 |
87489 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
252A>G |
Gln84Gln |
M0190142 |
PLHCLJLP_00107 |
87712 |
4 |
Gut |
0.08 |
protein_coding |
stop_lost&splice_region_variant |
HIGH |
591A>C |
Ter197Cysext*? |
M0190143 |
PLHCLJLP_00107 |
87842 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
461T>C |
Leu154Pro |
M0190144 |
PLHCLJLP_00107 |
87919 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
384T>G |
Cys128Trp |
M0190145 |
PLHCLJLP_00114 |
92413 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
735C>G |
Arg245Arg |
M0190146 |
PLHCLJLP_00114 |
92430 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
718G>A |
Asp240Asn |
M0190147 |
PLHCLJLP_00114 |
92431 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
717T>G |
Gly239Gly |
M0190148 |
PLHCLJLP_00114 |
92434 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
714G>T |
Arg238Arg |
M0190149 |
PLHCLJLP_00114 |
92468 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
680G>C |
Gly227Ala |
M0190150 |
PLHCLJLP_00114 |
92487 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
661A>G |
Lys221Glu |
M0190151 |
PLHCLJLP_00114 |
92512 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
636A>G |
Glu212Glu |
M0190152 |
PLHCLJLP_00114 |
92515 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
633C>T |
Tyr211Tyr |
M0190153 |
PLHCLJLP_00114 |
92615 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
533A>G |
His178Arg |
M0190154 |
PLHCLJLP_00114 |
92724 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
424T>G |
Ser142Ala |
M0190155 |
PLHCLJLP_00124 |
99465 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
218C>A |
Ala73Asp |
M0190156 |
PLHCLJLP_00124 |
99479 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
204A>G |
Glu68Glu |
M0190157 |
PLHCLJLP_00124 |
99679 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
4T>C |
Leu2Leu |
M0190158 |
PLHCLJLP_00124 |
99681 |
3 |
Gut |
0.06 |
protein_coding |
start_lost |
HIGH |
2T>C |
Met1? |
M0190159 |
PLHCLJLP_00125 |
99819 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
331A>G |
Thr111Ala |
M0190160 |
PLHCLJLP_00125 |
99954 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
196C>A |
Leu66Ile |
M0190161 |
PLHCLJLP_00125 |
99994 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
156A>G |
Lys52Lys |
M0190162 |
PLHCLJLP_00125 |
100007 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
143A>G |
Asn48Ser |
M0190163 |
PLHCLJLP_00125 |
100008 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
142A>G |
Asn48Asp |
M0190164 |
PLHCLJLP_00125 |
100083 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
67C>T |
His23Tyr |
M0190165 |
PLHCLJLP_00126 |
100355 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
484T>C |
Leu162Leu |
M0190166 |
PLHCLJLP_00126 |
100426 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
413A>G |
Lys138Arg |
M0190167 |
PLHCLJLP_00126 |
100432 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
407A>G |
Lys136Arg |
M0190168 |
PLHCLJLP_00126 |
100442 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
397A>G |
Ser133Gly |
M0190169 |
PLHCLJLP_00127 |
100915 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
33A>G |
Ala11Ala |
M0190170 |
PLHCLJLP_00134 |
105534 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
19G>A |
Val7Ile |
M0190171 |
PLHCLJLP_00134 |
105572 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
57T>C |
Cys19Cys |
M0190172 |
PLHCLJLP_00134 |
105659 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
144A>G |
Arg48Arg |
M0190173 |
PLHCLJLP_00134 |
105671 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
156A>G |
Ala52Ala |
M0190174 |
PLHCLJLP_00134 |
105716 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
201A>G |
Pro67Pro |
M0190175 |
PLHCLJLP_00134 |
105744 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
229G>A |
Ala77Thr |
M0190176 |
PLHCLJLP_00134 |
105795 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
280G>A |
Glu94Lys |
M0190177 |
PLHCLJLP_00134 |
105805 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
290G>A |
Cys97Tyr |
M0190178 |
PLHCLJLP_00134 |
105806 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
291C>T |
Cys97Cys |
M0190179 |
PLHCLJLP_00134 |
105809 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
294A>G |
Thr98Thr |
M0190180 |
PLHCLJLP_00134 |
105833 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
318A>G |
Thr106Thr |
M0190181 |
PLHCLJLP_00134 |
105875 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
360T>C |
Arg120Arg |
M0190182 |
PLHCLJLP_00135 |
105968 |
3 |
Gut |
0.06 |
protein_coding |
stop_gained |
HIGH |
10C>T |
Arg4* |
M0190183 |
PLHCLJLP_00135 |
105971 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
13A>G |
Asn5Asp |
M0190184 |
PLHCLJLP_00134 |
105993 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
478A>G |
Thr160Ala |
M0190185 |
PLHCLJLP_00135 |
106013 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
55A>T |
Ser19Cys |
M0190186 |
PLHCLJLP_00135 |
106024 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
66C>A |
Asn22Lys |
M0190187 |
PLHCLJLP_00135 |
106036 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
78A>T |
Gln26His |
M0190188 |
PLHCLJLP_00135 |
106039 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
81C>T |
Phe27Phe |
M0190189 |
PLHCLJLP_00135 |
106192 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
234T>C |
Asp78Asp |
M0190190 |
PLHCLJLP_00135 |
106279 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
321A>G |
Pro107Pro |
M0190191 |
PLHCLJLP_00135 |
106405 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
447G>A |
Arg149Arg |
M0190192 |
PLHCLJLP_00135 |
106661 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
703A>G |
Ile235Val |
M0190193 |
PLHCLJLP_00135 |
106672 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
714A>G |
Val238Val |
M0190194 |
PLHCLJLP_00136 |
106784 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
9C>T |
Asn3Asn |
M0190195 |
PLHCLJLP_00136 |
106891 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
116A>G |
Asp39Gly |
M0190196 |
PLHCLJLP_00129 |
106968 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4777A>G |
None |
M0190197 |
PLHCLJLP_00129 |
106992 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4801A>G |
None |
M0190198 |
PLHCLJLP_00129 |
107014 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4823A>G |
None |
M0190199 |
PLHCLJLP_00129 |
107027 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4836T>C |
None |
M0190200 |
PLHCLJLP_00129 |
107086 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4895G>A |
None |
M0190201 |
PLHCLJLP_00137 |
107273 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
69C>T |
Leu23Leu |
M0190202 |
PLHCLJLP_00137 |
107280 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
76A>G |
Ile26Val |
M0190203 |
PLHCLJLP_00137 |
107286 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
82C>G |
Leu28Val |
M0190204 |
PLHCLJLP_00137 |
107288 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
84C>A |
Leu28Leu |
M0190205 |
PLHCLJLP_00137 |
107540 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
336C>T |
Asn112Asn |
M0190206 |
PLHCLJLP_00141 |
110712 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
140A>G |
Asn47Ser |
M0190207 |
PLHCLJLP_00141 |
110719 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
147T>G |
Ala49Ala |
M0190208 |
PLHCLJLP_00141 |
110756 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
184C>T |
Leu62Leu |
M0190209 |
PLHCLJLP_00141 |
110816 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
244G>A |
Val82Ile |
M0190210 |
PLHCLJLP_00141 |
110818 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
246A>C |
Val82Val |
M0190211 |
PLHCLJLP_00141 |
110819 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
247C>T |
Leu83Leu |
M0190212 |
PLHCLJLP_00141 |
110822 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
250A>G |
Thr84Ala |
M0190213 |
PLHCLJLP_00141 |
110896 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
324A>G |
Lys108Lys |
M0190214 |
PLHCLJLP_00142 |
110941 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-316C>A |
None |
M0190215 |
PLHCLJLP_00142 |
110950 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-307C>T |
None |
M0190216 |
PLHCLJLP_00142 |
110979 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-278G>T |
None |
M0190217 |
PLHCLJLP_00142 |
110992 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-265C>T |
None |
M0190218 |
PLHCLJLP_00142 |
111004 |
6 |
Gut |
0.13 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-253T>G |
None |
M0190219 |
PLHCLJLP_00142 |
111109 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-148C>T |
None |
M0190220 |
PLHCLJLP_00142 |
111233 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-24T>C |
None |
M0190221 |
PLHCLJLP_00145 |
113881 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
363G>A |
Arg121Arg |
M0190222 |
PLHCLJLP_00145 |
113905 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
387A>G |
Val129Val |
M0190223 |
PLHCLJLP_00145 |
113938 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
420T>C |
Asp140Asp |
M0190224 |
PLHCLJLP_00145 |
113950 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
432A>G |
Gln144Gln |
M0190225 |
PLHCLJLP_00145 |
113953 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
435A>G |
Ala145Ala |
M0190226 |
PLHCLJLP_00145 |
114037 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
519A>G |
Arg173Arg |
M0190227 |
PLHCLJLP_00146 |
114096 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
45G>A |
Ala15Ala |
M0190228 |
PLHCLJLP_00147 |
114397 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-112C>A |
None |
M0190229 |
PLHCLJLP_00147 |
118432 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3924C>T |
Ser1308Ser |
M0190230 |
PLHCLJLP_00148 |
119014 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
180T>C |
Tyr60Tyr |
M0190231 |
PLHCLJLP_00148 |
119305 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
471G>A |
Ala157Ala |
M0190232 |
PLHCLJLP_00148 |
119512 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
678G>A |
Glu226Glu |
M0190233 |
PLHCLJLP_00149 |
119939 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
278C>T |
Ala93Val |
M0190234 |
PLHCLJLP_00149 |
119955 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
294A>G |
Gln98Gln |
M0190235 |
PLHCLJLP_00149 |
119989 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
328A>G |
Ile110Val |
M0190236 |
PLHCLJLP_00149 |
120057 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
396A>G |
Gln132Gln |
M0190237 |
PLHCLJLP_00149 |
120272 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
611G>C |
Gly204Ala |
M0190238 |
PLHCLJLP_00149 |
120277 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
616G>C |
Gly206Arg |
M0190239 |
PLHCLJLP_00149 |
120278 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
617G>C |
Gly206Ala |
M0190240 |
PLHCLJLP_00149 |
120315 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
654A>G |
Lys218Lys |
M0190241 |
PLHCLJLP_00149 |
120357 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
696C>T |
Ile232Ile |
M0190242 |
PLHCLJLP_00149 |
120360 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
699G>T |
Glu233Asp |
M0190243 |
PLHCLJLP_00149 |
120859 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1198A>G |
Asn400Asp |
M0190244 |
PLHCLJLP_00149 |
120921 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1260C>T |
Gly420Gly |
M0190245 |
PLHCLJLP_00150 |
121482 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
450T>A |
Ala150Ala |
M0190246 |
PLHCLJLP_00150 |
121800 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
132G>A |
Gln44Gln |
M0190247 |
PLHCLJLP_00156 |
125829 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
117G>A |
Thr39Thr |
M0190248 |
PLHCLJLP_00156 |
125876 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
70G>T |
Ala24Ser |
M0190249 |
PLHCLJLP_00157 |
126906 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
288T>A |
Arg96Arg |
M0190250 |
PLHCLJLP_00157 |
126935 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
317G>C |
Gly106Ala |
M0190251 |
PLHCLJLP_00157 |
127734 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1116G>C |
Glu372Asp |
M0190252 |
PLHCLJLP_00157 |
127737 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1119C>T |
Ser373Ser |
M0190253 |
PLHCLJLP_00157 |
127767 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1149T>C |
Thr383Thr |
M0190254 |
PLHCLJLP_00157 |
127770 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1152C>A |
Pro384Pro |
M0190255 |
PLHCLJLP_00157 |
127890 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
1272T>C |
Val424Val |
M0190256 |
PLHCLJLP_00157 |
128140 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1522T>G |
Ser508Ala |
M0190257 |
PLHCLJLP_00157 |
128523 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1905T>C |
Ser635Ser |
M0190258 |
PLHCLJLP_00157 |
128664 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2046A>G |
Gly682Gly |
M0190259 |
PLHCLJLP_00157 |
128700 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2082A>C |
Pro694Pro |
M0190260 |
PLHCLJLP_00157 |
128751 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2133T>C |
Asp711Asp |
M0190261 |
PLHCLJLP_00157 |
128775 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2157A>C |
Ile719Ile |
M0190262 |
PLHCLJLP_00157 |
128781 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2163G>A |
Lys721Lys |
M0190263 |
PLHCLJLP_00157 |
129343 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2725A>T |
Ser909Cys |
M0190264 |
PLHCLJLP_00157 |
129344 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2726G>C |
Ser909Thr |
M0190265 |
PLHCLJLP_00157 |
129351 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2733G>T |
Leu911Leu |
M0190266 |
PLHCLJLP_00157 |
129354 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2736A>G |
Gln912Gln |
M0190267 |
PLHCLJLP_00157 |
129483 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2865G>A |
Gly955Gly |
M0190268 |
PLHCLJLP_00157 |
129486 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2868T>A |
Arg956Arg |
M0190269 |
PLHCLJLP_00157 |
129561 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2943C>G |
Ala981Ala |
M0190270 |
PLHCLJLP_00157 |
129588 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2970G>C |
Leu990Leu |
M0190271 |
PLHCLJLP_00157 |
129589 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2971T>C |
Leu991Leu |
M0190272 |
PLHCLJLP_00157 |
129594 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2976T>C |
Gly992Gly |
M0190273 |
PLHCLJLP_00157 |
129666 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
3048G>A |
Lys1016Lys |
M0190274 |
PLHCLJLP_00157 |
129696 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
3078C>T |
Arg1026Arg |
M0190275 |
PLHCLJLP_00158 |
130056 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
15A>G |
Leu5Leu |
M0190276 |
PLHCLJLP_00158 |
130108 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
67T>C |
Ser23Pro |
M0190277 |
PLHCLJLP_00158 |
130149 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
108A>G |
Ile36Met |
M0190278 |
PLHCLJLP_00158 |
130180 |
6 |
Gut |
0.13 |
protein_coding |
stop_gained |
HIGH |
139C>T |
Gln47* |
M0190279 |
PLHCLJLP_00158 |
130181 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
140A>C |
Gln47Pro |
M0190280 |
PLHCLJLP_00158 |
130213 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
172C>T |
Arg58Trp |
M0190281 |
PLHCLJLP_00158 |
130240 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
199A>G |
Ile67Val |
M0190282 |
PLHCLJLP_00158 |
130275 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
234A>G |
Leu78Leu |
M0190283 |
PLHCLJLP_00158 |
130397 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
356C>A |
Ser119Tyr |
M0190284 |
PLHCLJLP_00158 |
130416 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
375A>G |
Leu125Leu |
M0190285 |
PLHCLJLP_00158 |
130423 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
382G>A |
Gly128Ser |
M0190286 |
PLHCLJLP_00158 |
130424 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
383G>A |
Gly128Asp |
M0190287 |
PLHCLJLP_00158 |
130592 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
551G>A |
Gly184Asp |
M0190288 |
PLHCLJLP_00158 |
130721 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
680G>A |
Arg227Gln |
M0190289 |
PLHCLJLP_00158 |
130725 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
684T>C |
Ala228Ala |
M0190290 |
PLHCLJLP_00158 |
130731 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
690T>C |
His230His |
M0190291 |
PLHCLJLP_00159 |
130889 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
129T>C |
Phe43Phe |
M0190292 |
PLHCLJLP_00159 |
131124 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
364T>C |
Leu122Leu |
M0190293 |
PLHCLJLP_00159 |
131354 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
594A>G |
Lys198Lys |
M0190294 |
PLHCLJLP_00159 |
131372 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
612T>C |
Tyr204Tyr |
M0190295 |
PLHCLJLP_00159 |
131406 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
646A>G |
Thr216Ala |
M0190296 |
PLHCLJLP_00159 |
131537 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
777C>T |
Val259Val |
M0190297 |
PLHCLJLP_00159 |
131546 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
786A>C |
Ala262Ala |
M0190298 |
PLHCLJLP_00159 |
131594 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
834A>G |
Ala278Ala |
M0190299 |
PLHCLJLP_00159 |
131774 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1014C>T |
Tyr338Tyr |
M0190300 |
PLHCLJLP_00159 |
131777 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1017T>G |
Gly339Gly |
M0190301 |
PLHCLJLP_00159 |
131795 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1035G>T |
Gly345Gly |
M0190302 |
PLHCLJLP_00159 |
131798 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1038T>G |
Leu346Leu |
M0190303 |
PLHCLJLP_00159 |
131801 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1041C>T |
Pro347Pro |
M0190304 |
PLHCLJLP_00159 |
131807 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1047A>C |
Glu349Asp |
M0190305 |
PLHCLJLP_00159 |
131831 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1071G>T |
Leu357Leu |
M0190306 |
PLHCLJLP_00159 |
131832 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1072C>T |
Leu358Leu |
M0190307 |
PLHCLJLP_00159 |
131852 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1092G>C |
Val364Val |
M0190308 |
PLHCLJLP_00159 |
131864 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1104C>T |
Ala368Ala |
M0190309 |
PLHCLJLP_00159 |
131867 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1107A>G |
Gly369Gly |
M0190310 |
PLHCLJLP_00159 |
131879 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1119T>A |
Ile373Ile |
M0190311 |
PLHCLJLP_00159 |
131882 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1122A>G |
Pro374Pro |
M0190312 |
PLHCLJLP_00159 |
131915 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1155A>G |
Arg385Arg |
M0190313 |
PLHCLJLP_00159 |
131948 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1188T>C |
Asn396Asn |
M0190314 |
PLHCLJLP_00159 |
131954 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1194G>C |
Thr398Thr |
M0190315 |
PLHCLJLP_00159 |
131957 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1197C>T |
Tyr399Tyr |
M0190316 |
PLHCLJLP_00159 |
131972 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1212C>G |
Thr404Thr |
M0190317 |
PLHCLJLP_00159 |
131975 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1215G>A |
Gln405Gln |
M0190318 |
PLHCLJLP_00159 |
132014 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1254A>G |
Gly418Gly |
M0190319 |
PLHCLJLP_00159 |
132083 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1323T>C |
Pro441Pro |
M0190320 |
PLHCLJLP_00159 |
132125 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1365A>G |
Gly455Gly |
M0190321 |
PLHCLJLP_00159 |
132140 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1380C>T |
Pro460Pro |
M0190322 |
PLHCLJLP_00159 |
132230 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1470C>T |
Gly490Gly |
M0190323 |
PLHCLJLP_00159 |
132257 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1497G>A |
Arg499Arg |
M0190324 |
PLHCLJLP_00159 |
132272 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1512T>C |
Asp504Asp |
M0190325 |
PLHCLJLP_00159 |
132281 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1521T>C |
Arg507Arg |
M0190326 |
PLHCLJLP_00159 |
132329 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1569A>C |
Gly523Gly |
M0190327 |
PLHCLJLP_00159 |
132356 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1596T>C |
Asn532Asn |
M0190328 |
PLHCLJLP_00159 |
132365 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1605A>G |
Pro535Pro |
M0190329 |
PLHCLJLP_00159 |
132383 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1623A>C |
Pro541Pro |
M0190330 |
PLHCLJLP_00159 |
132398 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1638T>C |
Ile546Ile |
M0190331 |
PLHCLJLP_00159 |
132402 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1642C>T |
Pro548Ser |
M0190332 |
PLHCLJLP_00159 |
132413 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1653T>C |
Asp551Asp |
M0190333 |
PLHCLJLP_00159 |
132530 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1770T>A |
Ala590Ala |
M0190334 |
PLHCLJLP_00159 |
132533 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1773C>T |
Gly591Gly |
M0190335 |
PLHCLJLP_00159 |
132536 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1776T>C |
Val592Val |
M0190336 |
PLHCLJLP_00159 |
132539 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1779T>C |
Asp593Asp |
M0190337 |
PLHCLJLP_00159 |
132545 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1785G>T |
Pro595Pro |
M0190338 |
PLHCLJLP_00159 |
132569 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1809T>C |
Ala603Ala |
M0190339 |
PLHCLJLP_00159 |
132605 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1845A>T |
Leu615Leu |
M0190340 |
PLHCLJLP_00160 |
132609 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-14C>T |
None |
M0190341 |
PLHCLJLP_00160 |
132620 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3T>A |
None |
M0190342 |
PLHCLJLP_00160 |
132706 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
84T>C |
Asp28Asp |
M0190343 |
PLHCLJLP_00160 |
132711 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
89C>A |
Ala30Asp |
M0190344 |
PLHCLJLP_00160 |
132719 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
97G>A |
Asp33Asn |
M0190345 |
PLHCLJLP_00160 |
132731 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
109A>G |
Thr37Ala |
M0190346 |
PLHCLJLP_00160 |
132755 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
133A>G |
Thr45Ala |
M0190347 |
PLHCLJLP_00160 |
132760 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
138C>T |
Phe46Phe |
M0190348 |
PLHCLJLP_00160 |
132775 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
153G>A |
Ala51Ala |
M0190349 |
PLHCLJLP_00160 |
132795 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
173G>C |
Gly58Ala |
M0190350 |
PLHCLJLP_00160 |
132798 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
176A>G |
Asp59Gly |
M0190351 |
PLHCLJLP_00160 |
132799 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
177T>G |
Asp59Glu |
M0190352 |
PLHCLJLP_00160 |
132803 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
181G>A |
Ala61Thr |
M0190353 |
PLHCLJLP_00160 |
132808 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
186A>G |
Gly62Gly |
M0190354 |
PLHCLJLP_00160 |
132823 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
201A>G |
Val67Val |
M0190355 |
PLHCLJLP_00160 |
132850 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
228A>G |
Glu76Glu |
M0190356 |
PLHCLJLP_00160 |
132871 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
249G>A |
Ala83Ala |
M0190357 |
PLHCLJLP_00160 |
132934 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
312G>A |
Gln104Gln |
M0190358 |
PLHCLJLP_00160 |
132944 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
322A>G |
Asn108Asp |
M0190359 |
PLHCLJLP_00160 |
132973 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
351A>G |
Pro117Pro |
M0190360 |
PLHCLJLP_00160 |
132991 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
369T>G |
Ser123Arg |
M0190361 |
PLHCLJLP_00160 |
132998 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
376T>C |
Ser126Pro |
M0190362 |
PLHCLJLP_00160 |
133067 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
445T>A |
Ser149Thr |
M0190363 |
PLHCLJLP_00160 |
133093 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
471G>A |
Thr157Thr |
M0190364 |
PLHCLJLP_00160 |
133111 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
489A>C |
Glu163Asp |
M0190365 |
PLHCLJLP_00160 |
133130 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
508G>A |
Asp170Asn |
M0190366 |
PLHCLJLP_00160 |
133155 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
533G>A |
Ser178Asn |
M0190367 |
PLHCLJLP_00160 |
133210 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
588C>G |
Asp196Glu |
M0190368 |
PLHCLJLP_00160 |
133256 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
634A>G |
Lys212Glu |
M0190369 |
PLHCLJLP_00160 |
133263 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
641C>T |
Pro214Leu |
M0190370 |
PLHCLJLP_00160 |
133313 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
691A>G |
Ile231Val |
M0190371 |
PLHCLJLP_00160 |
133314 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
692T>C |
Ile231Thr |
M0190372 |
PLHCLJLP_00160 |
133331 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
709C>T |
His237Tyr |
M0190373 |
PLHCLJLP_00160 |
133332 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
710A>G |
His237Arg |
M0190374 |
PLHCLJLP_00160 |
133475 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
853A>C |
Thr285Pro |
M0190375 |
PLHCLJLP_00160 |
133513 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
891A>T |
Ile297Ile |
M0190376 |
PLHCLJLP_00160 |
133585 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
963A>C |
Pro321Pro |
M0190377 |
PLHCLJLP_00160 |
133610 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
988T>A |
Trp330Arg |
M0190378 |
PLHCLJLP_00160 |
133613 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
991A>G |
Asn331Asp |
M0190379 |
PLHCLJLP_00160 |
133726 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1104A>G |
Pro368Pro |
M0190380 |
PLHCLJLP_00160 |
133767 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1145G>A |
Gly382Glu |
M0190381 |
PLHCLJLP_00160 |
133800 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1178T>C |
Leu393Pro |
M0190382 |
PLHCLJLP_00160 |
133802 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1180G>A |
Gly394Ser |
M0190383 |
PLHCLJLP_00160 |
133878 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1256A>G |
Asp419Gly |
M0190384 |
PLHCLJLP_00160 |
133921 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1299A>G |
Gln433Gln |
M0190385 |
PLHCLJLP_00160 |
133950 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1328T>A |
Val443Glu |
M0190386 |
PLHCLJLP_00160 |
133953 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1331A>G |
Asn444Ser |
M0190387 |
PLHCLJLP_00160 |
134847 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2225T>C |
Met742Thr |
M0190388 |
PLHCLJLP_00161 |
135065 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1099T>C |
Trp367Arg |
M0190389 |
PLHCLJLP_00163 |
137806 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
648G>A |
Val216Val |
M0190390 |
PLHCLJLP_00163 |
137812 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
654G>A |
Glu218Glu |
M0190391 |
PLHCLJLP_00163 |
137816 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
658T>A |
Ser220Thr |
M0190392 |
PLHCLJLP_00041 |
36841 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
356T>C |
Met119Thr |
M0190393 |
PLHCLJLP_00041 |
37086 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
111T>C |
Cys37Cys |
M0190394 |
PLHCLJLP_00001 |
352 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
321G>A |
Ala107Ala |
M0190395 |
PLHCLJLP_00005 |
2883 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
666C>T |
Asp222Asp |
M0190396 |
PLHCLJLP_00005 |
3000 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
783C>T |
Ser261Ser |
M0190397 |
PLHCLJLP_00005 |
3165 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
948C>T |
Gly316Gly |
M0190398 |
PLHCLJLP_00005 |
3216 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
999A>T |
Arg333Ser |
M0190399 |
PLHCLJLP_00005 |
3236 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1019A>G |
Asn340Ser |
M0190400 |
PLHCLJLP_00005 |
3333 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1116C>T |
Thr372Thr |
M0190401 |
PLHCLJLP_00007 |
3821 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
230A>T |
Asn77Ile |
M0190402 |
PLHCLJLP_00007 |
3847 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
256A>G |
Thr86Ala |
M0190403 |
PLHCLJLP_00007 |
4191 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
600T>C |
Asn200Asn |
M0190404 |
PLHCLJLP_00008 |
5136 |
3 |
Gut |
0.06 |
protein_coding |
splice_region_variant&stop_retained_variant |
LOW |
273G>A |
Ter91Ter |
M0190405 |
PLHCLJLP_00009 |
5139 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-156C>T |
None |
M0190406 |
PLHCLJLP_00009 |
5164 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-131G>A |
None |
M0190407 |
PLHCLJLP_00009 |
5169 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-126G>A |
None |
M0190408 |
PLHCLJLP_00009 |
5185 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-110T>C |
None |
M0190409 |
PLHCLJLP_00009 |
5188 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-107T>C |
None |
M0190410 |
PLHCLJLP_00009 |
5193 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-102A>G |
None |
M0190411 |
PLHCLJLP_00009 |
5198 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-97T>C |
None |
M0190412 |
PLHCLJLP_00009 |
5207 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-88T>G |
None |
M0190413 |
PLHCLJLP_00009 |
5210 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-85G>A |
None |
M0190414 |
PLHCLJLP_00010 |
5618 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
16A>G |
Thr6Ala |
M0190415 |
PLHCLJLP_00010 |
5677 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
75G>T |
Lys25Asn |
M0190416 |
PLHCLJLP_00010 |
5684 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
82C>T |
Leu28Phe |
M0190417 |
PLHCLJLP_00010 |
5883 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
281G>A |
Arg94Gln |
M0190418 |
PLHCLJLP_00013 |
8563 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-253T>C |
None |
M0190419 |
PLHCLJLP_00013 |
8584 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-274G>A |
None |
M0190420 |
PLHCLJLP_00014 |
8858 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
162A>G |
Thr54Thr |
M0190421 |
PLHCLJLP_00014 |
8930 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
234A>G |
Thr78Thr |
M0190422 |
PLHCLJLP_00014 |
9014 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
318A>G |
Gln106Gln |
M0190423 |
PLHCLJLP_00015 |
9050 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
28A>G |
Thr10Ala |
M0190424 |
PLHCLJLP_00015 |
9085 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
63G>C |
Glu21Asp |
M0190425 |
PLHCLJLP_00013 |
9316 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1006T>A |
None |
M0190426 |
PLHCLJLP_00017 |
9815 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
138A>C |
Ser46Ser |
M0190427 |
PLHCLJLP_00022 |
13466 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
734G>A |
Cys245Tyr |
M0190428 |
PLHCLJLP_00022 |
13773 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
427G>A |
Glu143Lys |
M0190429 |
PLHCLJLP_00023 |
14638 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
378C>T |
Ser126Ser |
M0190430 |
PLHCLJLP_00027 |
17016 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1287A>G |
Pro429Pro |
M0190431 |
PLHCLJLP_00027 |
17100 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1203C>T |
Val401Val |
M0190432 |
PLHCLJLP_00027 |
17113 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1190C>T |
Ala397Val |
M0190433 |
PLHCLJLP_00027 |
17137 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1166C>T |
Ala389Val |
M0190434 |
PLHCLJLP_00027 |
17159 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1144A>G |
Thr382Ala |
M0190435 |
PLHCLJLP_00027 |
17166 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1137G>A |
Lys379Lys |
M0190436 |
PLHCLJLP_00027 |
17289 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1014A>C |
Ala338Ala |
M0190437 |
PLHCLJLP_00027 |
17290 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1013C>T |
Ala338Val |
M0190438 |
PLHCLJLP_00027 |
17355 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
948G>A |
Ala316Ala |
M0190439 |
PLHCLJLP_00028 |
18746 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
17A>C |
Gln6Pro |
M0190440 |
PLHCLJLP_00028 |
18757 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
6A>G |
Leu2Leu |
M0190441 |
PLHCLJLP_00028 |
18759 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
4C>T |
Leu2Leu |
M0190442 |
PLHCLJLP_00031 |
20961 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1126A>G |
Thr376Ala |
M0190443 |
PLHCLJLP_00033 |
22067 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
393C>T |
Asp131Asp |
M0190444 |
PLHCLJLP_00033 |
22109 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
435C>T |
Val145Val |
M0190445 |
PLHCLJLP_00027 |
22116 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3814G>T |
None |
M0190446 |
PLHCLJLP_00027 |
22117 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3815A>C |
None |
M0190447 |
PLHCLJLP_00027 |
22119 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3817G>A |
None |
M0190448 |
PLHCLJLP_00027 |
22120 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3818C>A |
None |
M0190449 |
PLHCLJLP_00034 |
22455 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
199A>G |
Asn67Asp |
M0190450 |
PLHCLJLP_00034 |
22470 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
214A>G |
Ser72Gly |
M0190451 |
PLHCLJLP_00034 |
22507 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
251C>A |
Thr84Lys |
M0190452 |
PLHCLJLP_00034 |
22558 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
302C>T |
Thr101Ile |
M0190453 |
PLHCLJLP_00034 |
22622 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
366T>C |
Ser122Ser |
M0190454 |
PLHCLJLP_00034 |
22627 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
371A>C |
Asp124Ala |
M0190455 |
PLHCLJLP_00034 |
22650 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
394C>T |
Leu132Leu |
M0190456 |
PLHCLJLP_00034 |
22910 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
654T>G |
His218Gln |
M0190457 |
PLHCLJLP_00034 |
22978 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
722C>A |
Thr241Asn |
M0190458 |
PLHCLJLP_00034 |
23244 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
988G>A |
Gly330Arg |
M0190459 |
PLHCLJLP_00034 |
23245 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
989G>A |
Gly330Glu |
M0190460 |
PLHCLJLP_00034 |
23247 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
991G>A |
Glu331Lys |
M0190461 |
PLHCLJLP_00034 |
23251 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
995A>G |
Asn332Ser |
M0190462 |
PLHCLJLP_00034 |
23339 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1083T>C |
Ala361Ala |
M0190463 |
PLHCLJLP_00034 |
24374 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2118C>T |
Ile706Ile |
M0190464 |
PLHCLJLP_00034 |
24377 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2121C>T |
Thr707Thr |
M0190465 |
PLHCLJLP_00035 |
25028 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
348T>C |
Ile116Ile |
M0190466 |
PLHCLJLP_00035 |
25041 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
361G>A |
Ala121Thr |
M0190467 |
PLHCLJLP_00035 |
25061 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
381G>A |
Gly127Gly |
M0190468 |
PLHCLJLP_00035 |
25068 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
388A>G |
Thr130Ala |
M0190469 |
PLHCLJLP_00035 |
25071 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
391C>A |
Gln131Lys |
M0190470 |
PLHCLJLP_00035 |
25074 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
394T>G |
Ser132Ala |
M0190471 |
PLHCLJLP_00035 |
25075 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
395C>A |
Ser132Tyr |
M0190472 |
PLHCLJLP_00035 |
25080 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
400T>C |
Ser134Pro |
M0190473 |
PLHCLJLP_00035 |
25082 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
402T>G |
Ser134Ser |
M0190474 |
PLHCLJLP_00035 |
25083 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
403A>T |
Thr135Ser |
M0190475 |
PLHCLJLP_00035 |
25095 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
415C>A |
Leu139Met |
M0190476 |
PLHCLJLP_00035 |
25100 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
420G>A |
Ala140Ala |
M0190477 |
PLHCLJLP_00035 |
25237 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
557A>C |
Lys186Thr |
M0190478 |
PLHCLJLP_00035 |
25335 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
655A>G |
Thr219Ala |
M0190479 |
PLHCLJLP_00035 |
25481 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
801C>G |
Thr267Thr |
M0190480 |
PLHCLJLP_00035 |
25734 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1054G>A |
Ala352Thr |
M0190481 |
PLHCLJLP_00035 |
25736 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1056A>C |
Ala352Ala |
M0190482 |
PLHCLJLP_00035 |
25739 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1059C>G |
Ala353Ala |
M0190483 |
PLHCLJLP_00035 |
25745 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1065T>C |
Val355Val |
M0190484 |
PLHCLJLP_00035 |
25825 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1145T>C |
Leu382Ser |
M0190485 |
PLHCLJLP_00035 |
25966 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1286A>G |
Asp429Gly |
M0190486 |
PLHCLJLP_00035 |
26010 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1330G>A |
Ala444Thr |
M0190487 |
PLHCLJLP_00035 |
26078 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1398T>C |
Gly466Gly |
M0190488 |
PLHCLJLP_00035 |
26084 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1404T>C |
Leu468Leu |
M0190489 |
PLHCLJLP_00035 |
26093 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1413T>C |
Ile471Ile |
M0190490 |
PLHCLJLP_00035 |
26099 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1419C>T |
Ala473Ala |
M0190491 |
PLHCLJLP_00036 |
26246 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-99G>A |
None |
M0190492 |
PLHCLJLP_00036 |
26252 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-93T>G |
None |
M0190493 |
PLHCLJLP_00036 |
26474 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
130G>C |
Ala44Pro |
M0190494 |
PLHCLJLP_00036 |
26694 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
350G>A |
Gly117Asp |
M0190495 |
PLHCLJLP_00044 |
37995 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
30G>T |
Glu10Asp |
M0190496 |
PLHCLJLP_00044 |
38046 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
81G>A |
Glu27Glu |
M0190497 |
PLHCLJLP_00044 |
38085 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
120G>A |
Ala40Ala |
M0190498 |
PLHCLJLP_00044 |
38134 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
169G>A |
Ala57Thr |
M0190499 |
PLHCLJLP_00044 |
38140 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
175G>C |
Glu59Gln |
M0190500 |
PLHCLJLP_00044 |
38280 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
315G>T |
Gly105Gly |
M0190501 |
PLHCLJLP_00044 |
38358 |
9 |
Gut |
0.19 |
protein_coding |
synonymous_variant |
LOW |
393T>C |
Asn131Asn |
M0190502 |
PLHCLJLP_00044 |
38362 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
397G>A |
Asp133Asn |
M0190503 |
PLHCLJLP_00044 |
38373 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
408G>A |
Lys136Lys |
M0190504 |
PLHCLJLP_00044 |
38670 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
705A>G |
Lys235Lys |
M0190505 |
PLHCLJLP_00044 |
39118 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1153A>G |
Thr385Ala |
M0190506 |
PLHCLJLP_00044 |
39227 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
1262A>C |
Lys421Thr |
M0190507 |
PLHCLJLP_00044 |
39309 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1344C>T |
Gly448Gly |
M0190508 |
PLHCLJLP_00044 |
39635 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
1670C>A |
Thr557Asn |
M0190509 |
PLHCLJLP_00044 |
39766 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1801C>A |
Arg601Ser |
M0190510 |
PLHCLJLP_00044 |
39772 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1807A>G |
Lys603Glu |
M0190511 |
PLHCLJLP_00044 |
39774 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1809A>C |
Lys603Asn |
M0190512 |
PLHCLJLP_00044 |
39792 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1827C>G |
Ser609Arg |
M0190513 |
PLHCLJLP_00044 |
39794 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1829C>T |
Ser610Leu |
M0190514 |
PLHCLJLP_00044 |
39910 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1945A>T |
Asn649Tyr |
M0190515 |
PLHCLJLP_00046 |
43603 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
22G>A |
Val8Ile |
M0190516 |
PLHCLJLP_00046 |
44004 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
423T>C |
Tyr141Tyr |
M0190517 |
PLHCLJLP_00046 |
44025 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
444G>A |
Gln148Gln |
M0190518 |
PLHCLJLP_00046 |
44051 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
470G>A |
Gly157Asp |
M0190519 |
PLHCLJLP_00046 |
44070 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
489G>C |
Ala163Ala |
M0190520 |
PLHCLJLP_00046 |
44097 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
516G>A |
Ala172Ala |
M0190521 |
PLHCLJLP_00046 |
44144 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
563A>C |
Asp188Ala |
M0190522 |
PLHCLJLP_00046 |
44146 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
565A>G |
Asn189Asp |
M0190523 |
PLHCLJLP_00046 |
44159 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
578G>C |
Gly193Ala |
M0190524 |
PLHCLJLP_00046 |
44160 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
579C>A |
Gly193Gly |
M0190525 |
PLHCLJLP_00046 |
44176 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
595G>A |
Ala199Thr |
M0190526 |
PLHCLJLP_00046 |
44227 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
646C>A |
Gln216Lys |
M0190527 |
PLHCLJLP_00046 |
44231 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
650C>A |
Ala217Asp |
M0190528 |
PLHCLJLP_00046 |
44303 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
722C>A |
Ala241Glu |
M0190529 |
PLHCLJLP_00046 |
44342 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
761A>G |
Asp254Gly |
M0190530 |
PLHCLJLP_00046 |
44352 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
771T>C |
Asp257Asp |
M0190531 |
PLHCLJLP_00046 |
44376 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
795T>C |
Ser265Ser |
M0190532 |
PLHCLJLP_00046 |
44404 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
823A>G |
Thr275Ala |
M0190533 |
PLHCLJLP_00046 |
44406 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
825G>C |
Thr275Thr |
M0190534 |
PLHCLJLP_00046 |
44414 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
833G>A |
Arg278Lys |
M0190535 |
PLHCLJLP_00046 |
44417 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
836G>A |
Arg279Lys |
M0190536 |
PLHCLJLP_00046 |
44427 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
846T>C |
Ala282Ala |
M0190537 |
PLHCLJLP_00046 |
44498 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
917G>A |
Arg306Gln |
M0190538 |
PLHCLJLP_00046 |
44541 |
10 |
Gut |
0.21 |
protein_coding |
synonymous_variant |
LOW |
960C>T |
Asp320Asp |
M0190539 |
PLHCLJLP_00046 |
44595 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1014G>A |
Ala338Ala |
M0190540 |
PLHCLJLP_00046 |
45247 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1666C>A |
Pro556Thr |
M0190541 |
PLHCLJLP_00046 |
45255 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1674G>T |
Leu558Phe |
M0190542 |
PLHCLJLP_00046 |
45486 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1905T>C |
Ala635Ala |
M0190543 |
PLHCLJLP_00046 |
45572 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1991G>A |
Arg664Lys |
M0190544 |
PLHCLJLP_00046 |
45585 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2004T>C |
Ala668Ala |
M0190545 |
PLHCLJLP_00046 |
45675 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2094G>A |
Gln698Gln |
M0190546 |
PLHCLJLP_00046 |
45676 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2095A>G |
Thr699Ala |
M0190547 |
PLHCLJLP_00046 |
45678 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2097G>C |
Thr699Thr |
M0190548 |
PLHCLJLP_00046 |
45680 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2099C>A |
Ala700Glu |
M0190549 |
PLHCLJLP_00046 |
45681 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2100G>T |
Ala700Ala |
M0190550 |
PLHCLJLP_00046 |
45689 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2108A>C |
Glu703Ala |
M0190551 |
PLHCLJLP_00046 |
45690 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2109A>G |
Glu703Glu |
M0190552 |
PLHCLJLP_00046 |
45693 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2112G>T |
Ala704Ala |
M0190553 |
PLHCLJLP_00046 |
45696 |
8 |
Gut |
0.17 |
protein_coding |
synonymous_variant |
LOW |
2115C>T |
Tyr705Tyr |
M0190554 |
PLHCLJLP_00046 |
45712 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2131T>G |
Ser711Ala |
M0190555 |
PLHCLJLP_00046 |
45734 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2153A>G |
Glu718Gly |
M0190556 |
PLHCLJLP_00046 |
45802 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2221A>G |
Thr741Ala |
M0190557 |
PLHCLJLP_00046 |
45841 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
2260G>A |
Ala754Thr |
M0190558 |
PLHCLJLP_00046 |
45846 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2265G>A |
Gln755Gln |
M0190559 |
PLHCLJLP_00046 |
45894 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2313G>C |
Ala771Ala |
M0190560 |
PLHCLJLP_00046 |
45932 |
8 |
Gut |
0.17 |
protein_coding |
missense_variant |
MODERATE |
2351A>C |
Asp784Ala |
M0190561 |
PLHCLJLP_00046 |
45940 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2359G>A |
Ala787Thr |
M0190562 |
PLHCLJLP_00046 |
45942 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2361A>T |
Ala787Ala |
M0190563 |
PLHCLJLP_00046 |
45945 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2364C>G |
Ala788Ala |
M0190564 |
PLHCLJLP_00046 |
45965 |
9 |
Gut |
0.19 |
protein_coding |
missense_variant |
MODERATE |
2384T>C |
Val795Ala |
M0190565 |
PLHCLJLP_00046 |
46191 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2610G>C |
Thr870Thr |
M0190566 |
PLHCLJLP_00046 |
46194 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2613A>C |
Glu871Asp |
M0190567 |
PLHCLJLP_00046 |
46197 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2616G>C |
Ala872Ala |
M0190568 |
PLHCLJLP_00046 |
46209 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2628G>C |
Leu876Leu |
M0190569 |
PLHCLJLP_00046 |
46212 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2631C>A |
Asp877Glu |
M0190570 |
PLHCLJLP_00046 |
46275 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2694T>C |
Asp898Asp |
M0190571 |
PLHCLJLP_00046 |
46284 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2703C>A |
Leu901Leu |
M0190572 |
PLHCLJLP_00046 |
46382 |
9 |
Gut |
0.19 |
protein_coding |
missense_variant |
MODERATE |
2801C>A |
Ala934Glu |
M0190573 |
PLHCLJLP_00046 |
46383 |
9 |
Gut |
0.19 |
protein_coding |
synonymous_variant |
LOW |
2802G>A |
Ala934Ala |
M0190574 |
PLHCLJLP_00047 |
46778 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
12G>A |
Val4Val |
M0190575 |
PLHCLJLP_00044 |
47090 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4502A>C |
None |
M0190576 |
PLHCLJLP_00044 |
47095 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4507A>T |
None |
M0190577 |
PLHCLJLP_00044 |
47117 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4529C>T |
None |
M0190578 |
PLHCLJLP_00044 |
47122 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4534C>T |
None |
M0190579 |
PLHCLJLP_00044 |
47123 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4535C>T |
None |
M0190580 |
PLHCLJLP_00044 |
47126 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4538C>A |
None |
M0190581 |
PLHCLJLP_00044 |
47140 |
4 |
Gut |
0.08 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4552A>G |
None |
M0190582 |
PLHCLJLP_00048 |
47698 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
948C>T |
Gly316Gly |
M0190583 |
PLHCLJLP_00048 |
47782 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
864A>G |
Arg288Arg |
M0190584 |
PLHCLJLP_00048 |
47802 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
844A>G |
Thr282Ala |
M0190585 |
PLHCLJLP_00048 |
47806 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
840G>A |
Gln280Gln |
M0190586 |
PLHCLJLP_00048 |
47862 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
784A>G |
Asn262Asp |
M0190587 |
PLHCLJLP_00048 |
47866 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
780A>G |
Lys260Lys |
M0190588 |
PLHCLJLP_00048 |
47954 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
692C>T |
Thr231Met |
M0190589 |
PLHCLJLP_00048 |
48483 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
163A>G |
Asn55Asp |
M0190590 |
PLHCLJLP_00051 |
50379 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
574A>G |
Thr192Ala |
M0190591 |
PLHCLJLP_00051 |
50434 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
519A>G |
Ala173Ala |
M0190592 |
PLHCLJLP_00051 |
50450 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
503C>T |
Ala168Val |
M0190593 |
PLHCLJLP_00051 |
50490 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
463A>G |
Ser155Gly |
M0190594 |
PLHCLJLP_00051 |
50719 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
234A>G |
Lys78Lys |
M0190595 |
PLHCLJLP_00051 |
50728 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
225A>T |
Gly75Gly |
M0190596 |
PLHCLJLP_00052 |
51180 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2949T>C |
Ala983Ala |
M0190597 |
PLHCLJLP_00052 |
51541 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2588A>G |
Lys863Arg |
M0190598 |
PLHCLJLP_00052 |
51543 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2586T>C |
Gly862Gly |
M0190599 |
PLHCLJLP_00052 |
51602 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2527A>G |
Asn843Asp |
M0190600 |
PLHCLJLP_00052 |
51642 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2487A>T |
Gly829Gly |
M0190601 |
PLHCLJLP_00052 |
51750 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2379C>T |
Ala793Ala |
M0190602 |
PLHCLJLP_00052 |
51867 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2262A>G |
Glu754Glu |
M0190603 |
PLHCLJLP_00052 |
51869 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2260G>C |
Glu754Gln |
M0190604 |
PLHCLJLP_00052 |
51870 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2259G>A |
Glu753Glu |
M0190605 |
PLHCLJLP_00052 |
52012 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2117C>T |
Ala706Val |
M0190606 |
PLHCLJLP_00052 |
52365 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1764C>T |
Ala588Ala |
M0190607 |
PLHCLJLP_00052 |
52371 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1758A>G |
Lys586Lys |
M0190608 |
PLHCLJLP_00052 |
52377 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1752A>G |
Leu584Leu |
M0190609 |
PLHCLJLP_00052 |
52395 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1734A>G |
Ala578Ala |
M0190610 |
PLHCLJLP_00052 |
52598 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1531A>G |
Ile511Val |
M0190611 |
PLHCLJLP_00052 |
52605 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1524A>G |
Lys508Lys |
M0190612 |
PLHCLJLP_00052 |
52671 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1458A>G |
Glu486Glu |
M0190613 |
PLHCLJLP_00052 |
52680 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1449C>T |
Asp483Asp |
M0190614 |
PLHCLJLP_00052 |
52686 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1443C>T |
Gly481Gly |
M0190615 |
PLHCLJLP_00052 |
52691 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1438G>A |
Ala480Thr |
M0190616 |
PLHCLJLP_00052 |
52716 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1413C>T |
Ala471Ala |
M0190617 |
PLHCLJLP_00052 |
52720 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1409G>A |
Gly470Asp |
M0190618 |
PLHCLJLP_00052 |
52825 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1304G>A |
Arg435Lys |
M0190619 |
PLHCLJLP_00052 |
52901 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1228C>G |
Pro410Ala |
M0190620 |
PLHCLJLP_00052 |
52902 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1227C>A |
Thr409Thr |
M0190621 |
PLHCLJLP_00052 |
52903 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1226C>G |
Thr409Ser |
M0190622 |
PLHCLJLP_00052 |
52962 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1167C>T |
His389His |
M0190623 |
PLHCLJLP_00052 |
53142 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
987T>C |
Asp329Asp |
M0190624 |
PLHCLJLP_00052 |
53726 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
403G>A |
Ala135Thr |
M0190625 |
PLHCLJLP_00049 |
54196 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4382A>G |
None |
M0190626 |
PLHCLJLP_00049 |
54197 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4383C>T |
None |
M0190627 |
PLHCLJLP_00049 |
54268 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4454C>T |
None |
M0190628 |
PLHCLJLP_00049 |
54286 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4472A>C |
None |
M0190629 |
PLHCLJLP_00049 |
54291 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4477G>A |
None |
M0190630 |
PLHCLJLP_00049 |
54341 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4527C>T |
None |
M0190631 |
PLHCLJLP_00049 |
54351 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4537T>C |
None |
M0190632 |
PLHCLJLP_00049 |
54352 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4538C>T |
None |
M0190633 |
PLHCLJLP_00049 |
54394 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4580A>C |
None |
M0190634 |
PLHCLJLP_00053 |
54415 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
17G>A |
Gly6Glu |
M0190635 |
PLHCLJLP_00053 |
54525 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
127A>G |
Ser43Gly |
M0190636 |
PLHCLJLP_00053 |
54545 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
147A>G |
Leu49Leu |
M0190637 |
PLHCLJLP_00053 |
54569 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
171C>T |
Tyr57Tyr |
M0190638 |
PLHCLJLP_00053 |
54585 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
187G>A |
Asp63Asn |
M0190639 |
PLHCLJLP_00053 |
54589 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
191G>A |
Arg64Gln |
M0190640 |
PLHCLJLP_00053 |
54631 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
233G>A |
Arg78Lys |
M0190641 |
PLHCLJLP_00053 |
54646 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
248G>A |
Arg83Gln |
M0190642 |
PLHCLJLP_00065 |
60639 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
226A>G |
Ile76Val |
M0190643 |
PLHCLJLP_00065 |
60745 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
120C>G |
Arg40Arg |
M0190644 |
PLHCLJLP_00065 |
60746 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
119G>A |
Arg40His |
M0190645 |
PLHCLJLP_00065 |
60833 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
32G>A |
Arg11Lys |
M0190646 |
PLHCLJLP_00065 |
60844 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
21G>A |
Glu7Glu |
M0190647 |
PLHCLJLP_00066 |
60859 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
541G>A |
Gly181Arg |
M0190648 |
PLHCLJLP_00069 |
62396 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
296G>A |
Arg99Lys |
M0190649 |
PLHCLJLP_00069 |
62401 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
291T>A |
Asn97Lys |
M0190650 |
PLHCLJLP_00069 |
62403 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
289A>G |
Asn97Asp |
M0190651 |
PLHCLJLP_00069 |
62409 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
283C>T |
His95Tyr |
M0190652 |
PLHCLJLP_00069 |
62410 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
282C>T |
Asp94Asp |
M0190653 |
PLHCLJLP_00069 |
62417 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
275T>C |
Val92Ala |
M0190654 |
PLHCLJLP_00069 |
62418 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
274G>A |
Val92Ile |
M0190655 |
PLHCLJLP_00201 |
155784 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
51C>A |
Thr17Thr |
M0190656 |
PLHCLJLP_00201 |
155790 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
45T>C |
Cys15Cys |
M0190657 |
PLHCLJLP_00201 |
155834 |
4 |
Gut |
0.08 |
protein_coding |
start_lost |
HIGH |
1A>G |
Met1? |
M0190658 |
PLHCLJLP_00202 |
155936 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
156T>C |
Ser52Ser |
M0190659 |
PLHCLJLP_00202 |
155971 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
121A>G |
Thr41Ala |
M0190660 |
PLHCLJLP_00202 |
156032 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
60A>G |
Pro20Pro |
M0190661 |
PLHCLJLP_00203 |
156521 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
249A>C |
Leu83Leu |
M0190662 |
PLHCLJLP_00203 |
156596 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
174C>T |
Gly58Gly |
M0190663 |
PLHCLJLP_00200 |
156809 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1283A>G |
None |
M0190664 |
PLHCLJLP_00204 |
157103 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
69G>A |
Glu23Glu |
M0190665 |
PLHCLJLP_00204 |
157105 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
71G>A |
Arg24His |
M0190666 |
PLHCLJLP_00204 |
157107 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
73T>A |
Phe25Ile |
M0190667 |
PLHCLJLP_00204 |
157155 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
121A>G |
Arg41Gly |
M0190668 |
PLHCLJLP_00200 |
159903 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4377C>T |
None |
M0190669 |
PLHCLJLP_00208 |
160487 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
449A>G |
Lys150Arg |
M0190670 |
PLHCLJLP_00209 |
161987 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
799C>T |
Leu267Leu |
M0190671 |
PLHCLJLP_00209 |
162221 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1033G>A |
Ala345Thr |
M0190672 |
PLHCLJLP_00209 |
162268 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1080A>G |
Thr360Thr |
M0190673 |
PLHCLJLP_00210 |
162707 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
333T>C |
Arg111Arg |
M0190674 |
PLHCLJLP_00211 |
162851 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
6A>C |
Arg2Ser |
M0190675 |
PLHCLJLP_00211 |
162978 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
133A>G |
Arg45Gly |
M0190676 |
PLHCLJLP_00211 |
163337 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
492C>A |
Ala164Ala |
M0190677 |
PLHCLJLP_00211 |
163340 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
495T>A |
Ala165Ala |
M0190678 |
PLHCLJLP_00211 |
163761 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
916G>A |
Val306Ile |
M0190679 |
PLHCLJLP_00211 |
163778 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
933T>C |
Thr311Thr |
M0190680 |
PLHCLJLP_00211 |
163959 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1114A>G |
Ile372Val |
M0190681 |
PLHCLJLP_00211 |
164210 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1365T>C |
Asn455Asn |
M0190682 |
PLHCLJLP_00211 |
164217 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1372G>A |
Gly458Ser |
M0190683 |
PLHCLJLP_00211 |
164234 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1389G>A |
Gly463Gly |
M0190684 |
PLHCLJLP_00211 |
164342 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1497C>T |
Tyr499Tyr |
M0190685 |
PLHCLJLP_00211 |
164348 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1503C>T |
Thr501Thr |
M0190686 |
PLHCLJLP_00211 |
164351 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1506C>T |
Asp502Asp |
M0190687 |
PLHCLJLP_00211 |
164540 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1695A>G |
Pro565Pro |
M0190688 |
PLHCLJLP_00211 |
164618 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1773C>T |
Pro591Pro |
M0190689 |
PLHCLJLP_00211 |
165182 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2337T>C |
Phe779Phe |
M0190690 |
PLHCLJLP_00212 |
165502 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-158C>T |
None |
M0190691 |
PLHCLJLP_00212 |
165527 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-133C>T |
None |
M0190692 |
PLHCLJLP_00212 |
165530 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-130C>T |
None |
M0190693 |
PLHCLJLP_00212 |
165532 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-128T>C |
None |
M0190694 |
PLHCLJLP_00212 |
165722 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
63T>C |
Phe21Phe |
M0190695 |
PLHCLJLP_00212 |
165980 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
321T>C |
Ser107Ser |
M0190696 |
PLHCLJLP_00213 |
166244 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
222T>C |
Ile74Ile |
M0190697 |
PLHCLJLP_00209 |
166558 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4167G>A |
None |
M0190698 |
PLHCLJLP_00209 |
166564 |
3 |
Gut |
0.06 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4173T>C |
None |
M0190699 |
PLHCLJLP_00209 |
166567 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4176C>A |
None |
M0190700 |
PLHCLJLP_00209 |
166570 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4179T>C |
None |
M0190701 |
PLHCLJLP_00209 |
166576 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4185T>C |
None |
M0190702 |
PLHCLJLP_00214 |
166696 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
504G>A |
Arg168Arg |
M0190703 |
PLHCLJLP_00214 |
166697 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
503G>T |
Arg168Met |
M0190704 |
PLHCLJLP_00214 |
166699 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
501A>G |
Pro167Pro |
M0190705 |
PLHCLJLP_00214 |
166702 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
498A>T |
Lys166Asn |
M0190706 |
PLHCLJLP_00214 |
166706 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
494T>G |
Met165Arg |
M0190707 |
PLHCLJLP_00214 |
166724 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
476T>G |
Met159Arg |
M0190708 |
PLHCLJLP_00214 |
166777 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
423C>T |
Cys141Cys |
M0190709 |
PLHCLJLP_00214 |
166792 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
408C>T |
His136His |
M0190710 |
PLHCLJLP_00214 |
166794 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
406C>G |
His136Asp |
M0190711 |
PLHCLJLP_00214 |
166799 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
401A>G |
Lys134Arg |
M0190712 |
PLHCLJLP_00214 |
166801 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
399C>A |
Asp133Glu |
M0190713 |
PLHCLJLP_00214 |
166804 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
396C>A |
Ser132Arg |
M0190714 |
PLHCLJLP_00214 |
166876 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
324G>T |
Arg108Ser |
M0190715 |
PLHCLJLP_00214 |
166887 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
313C>T |
Leu105Leu |
M0190716 |
PLHCLJLP_00214 |
166903 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
297G>A |
Met99Ile |
M0190717 |
PLHCLJLP_00214 |
167005 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
195C>T |
Thr65Thr |
M0190718 |
PLHCLJLP_00214 |
167008 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
192T>C |
Asn64Asn |
M0190719 |
PLHCLJLP_00214 |
167009 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
191A>G |
Asn64Ser |
M0190720 |
PLHCLJLP_00214 |
167014 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
186A>G |
Arg62Arg |
M0190721 |
PLHCLJLP_00214 |
167332 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-133C>T |
None |
M0190722 |
PLHCLJLP_00214 |
167392 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-193C>T |
None |
M0190723 |
PLHCLJLP_00214 |
167398 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-199A>G |
None |
M0190724 |
PLHCLJLP_00214 |
167513 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-314T>C |
None |
M0190725 |
PLHCLJLP_00214 |
167514 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-315C>T |
None |
M0190726 |
PLHCLJLP_00214 |
167521 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-322C>T |
None |
M0190727 |
PLHCLJLP_00214 |
167560 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-361C>T |
None |
M0190728 |
PLHCLJLP_00214 |
167599 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-400G>A |
None |
M0190729 |
PLHCLJLP_00214 |
168814 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1615A>G |
None |
M0190730 |
PLHCLJLP_00044 |
40711 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2746G>A |
Val916Ile |
M0190731 |
PLHCLJLP_00044 |
40728 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2763A>C |
Thr921Thr |
M0190732 |
PLHCLJLP_00044 |
40762 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2797G>A |
Gly933Ser |
M0190733 |
PLHCLJLP_00046 |
44164 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
583A>G |
Thr195Ala |
M0190734 |
PLHCLJLP_00046 |
44471 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
890C>T |
Ala297Val |
M0190735 |
PLHCLJLP_00044 |
37997 |
7 |
Gut |
0.15 |
protein_coding |
missense_variant |
MODERATE |
32T>A |
Val11Asp |
M0190736 |
PLHCLJLP_00044 |
38006 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
41T>G |
Leu14Arg |
M0190737 |
PLHCLJLP_00044 |
38384 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
419A>G |
Lys140Arg |
M0190738 |
PLHCLJLP_00044 |
38396 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
431A>C |
Asp144Ala |
M0190739 |
PLHCLJLP_00044 |
40493 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2528A>G |
Asn843Ser |
M0190740 |
PLHCLJLP_00044 |
40684 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2719G>A |
Gly907Ser |
M0190741 |
PLHCLJLP_00044 |
40685 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2720G>A |
Gly907Asp |
M0190742 |
PLHCLJLP_00044 |
42521 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
4556T>C |
Met1519Thr |
M0190743 |
PLHCLJLP_00044 |
40197 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2232C>G |
Thr744Thr |
M0190744 |
PLHCLJLP_00044 |
40204 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2239A>G |
Thr747Ala |
M0190745 |
PLHCLJLP_00044 |
40205 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2240C>A |
Thr747Lys |
M0190746 |
PLHCLJLP_00044 |
40206 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2241G>C |
Thr747Thr |
M0190747 |
PLHCLJLP_00001 |
105 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
74T>C |
Val25Ala |
M0190748 |
PLHCLJLP_00007 |
3757 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
166A>G |
Ser56Gly |
M0190749 |
PLHCLJLP_00008 |
5089 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
226G>A |
Val76Ile |
M0190750 |
PLHCLJLP_00008 |
5117 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
254A>C |
Glu85Ala |
M0190751 |
PLHCLJLP_00044 |
38805 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
840T>C |
Gly280Gly |
M0190752 |
PLHCLJLP_00044 |
40277 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2312C>T |
Ala771Val |
M0190753 |
PLHCLJLP_00044 |
40918 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2953A>G |
Asn985Asp |
M0190754 |
PLHCLJLP_00044 |
41002 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
3037A>G |
Thr1013Ala |
M0190755 |
PLHCLJLP_00044 |
41430 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3465A>G |
Ala1155Ala |
M0190756 |
PLHCLJLP_00046 |
43992 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
411C>G |
Ala137Ala |
M0190757 |
PLHCLJLP_00046 |
43996 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
415A>G |
Lys139Glu |
M0190758 |
PLHCLJLP_00046 |
43997 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
416A>C |
Lys139Thr |
M0190759 |
PLHCLJLP_00046 |
44001 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
420T>C |
Asn140Asn |
M0190760 |
PLHCLJLP_00046 |
45528 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1947G>A |
Ala649Ala |
M0190761 |
PLHCLJLP_00046 |
45561 |
7 |
Gut |
0.15 |
protein_coding |
synonymous_variant |
LOW |
1980T>G |
Ala660Ala |
M0190762 |
PLHCLJLP_00046 |
46345 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2764A>C |
Lys922Gln |
M0190763 |
PLHCLJLP_00046 |
46346 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2765A>G |
Lys922Arg |
M0190764 |
PLHCLJLP_00046 |
46351 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2770C>A |
Gln924Lys |
M0190765 |
PLHCLJLP_00046 |
46390 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
2809C>A |
Gln937Lys |
M0190766 |
PLHCLJLP_00046 |
46567 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2986C>A |
Arg996Ser |
M0190767 |
PLHCLJLP_00046 |
46568 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2987G>A |
Arg996His |
M0190768 |
PLHCLJLP_00046 |
46569 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2988T>G |
Arg996Arg |
M0190769 |
PLHCLJLP_00046 |
46572 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2991A>G |
Val997Val |
M0190770 |
PLHCLJLP_00046 |
46575 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2994T>C |
Arg998Arg |
M0190771 |
PLHCLJLP_00047 |
46892 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
126C>A |
Gly42Gly |
M0190772 |
PLHCLJLP_00047 |
46893 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
127C>A |
Leu43Met |
M0190773 |
PLHCLJLP_00047 |
46895 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
129G>A |
Leu43Leu |
M0190774 |
PLHCLJLP_00047 |
46900 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
134A>G |
His45Arg |
M0190775 |
PLHCLJLP_00047 |
46958 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
192A>G |
Thr64Thr |
M0190776 |
PLHCLJLP_00047 |
46985 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
219G>A |
Gln73Gln |
M0190777 |
PLHCLJLP_00047 |
46989 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
223A>C |
Asn75His |
M0190778 |
PLHCLJLP_00047 |
46991 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
225T>C |
Asn75Asn |
M0190779 |
PLHCLJLP_00047 |
46997 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
231C>T |
Asp77Asp |
M0190780 |
PLHCLJLP_00044 |
47184 |
5 |
Gut |
0.10 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4596A>G |
None |
M0190781 |
PLHCLJLP_00044 |
47243 |
3 |
Gut |
0.06 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4655C>T |
None |
M0190782 |
PLHCLJLP_00215 |
168124 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
489A>G |
Ala163Ala |
M0190783 |
PLHCLJLP_00215 |
168133 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
480A>T |
Glu160Asp |
M0190784 |
PLHCLJLP_00215 |
168175 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
438C>T |
Ser146Ser |
M0190785 |
PLHCLJLP_00215 |
168241 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
372C>T |
Asn124Asn |
M0190786 |
PLHCLJLP_00215 |
168596 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
17T>C |
Leu6Pro |
M0190787 |
PLHCLJLP_00073 |
63886 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
116T>C |
Val39Ala |
M0190788 |
PLHCLJLP_00074 |
65208 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
413G>A |
Gly138Asp |
M0190789 |
PLHCLJLP_00074 |
65281 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
486C>T |
Asn162Asn |
M0190790 |
PLHCLJLP_00074 |
65284 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
489A>G |
Ala163Ala |
M0190791 |
PLHCLJLP_00074 |
65287 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
492T>C |
Asp164Asp |
M0190792 |
PLHCLJLP_00074 |
65361 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
566A>G |
Asn189Ser |
M0190793 |
PLHCLJLP_00075 |
65679 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
222T>C |
Asn74Asn |
M0190794 |
PLHCLJLP_00075 |
65682 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
225T>C |
His75His |
M0190795 |
PLHCLJLP_00080 |
68692 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
450G>C |
Glu150Asp |
M0190796 |
PLHCLJLP_00081 |
68973 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
111T>C |
Thr37Thr |
M0190797 |
PLHCLJLP_00081 |
69061 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
199G>A |
Ala67Thr |
M0190798 |
PLHCLJLP_00083 |
69957 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
466A>G |
Ser156Gly |
M0190799 |
PLHCLJLP_00070 |
62718 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
315G>A |
Glu105Glu |
M0190800 |
PLHCLJLP_00070 |
62722 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
311C>T |
Ala104Val |
M0190801 |
PLHCLJLP_00070 |
62788 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
245C>A |
Ala82Asp |
M0190802 |
PLHCLJLP_00070 |
62908 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
125C>A |
Ala42Glu |
M0190803 |
PLHCLJLP_00072 |
63459 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
104A>G |
Lys35Arg |
M0190804 |
PLHCLJLP_00079 |
67820 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
127A>C |
Ile43Leu |
M0190805 |
PLHCLJLP_00085 |
70745 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
293G>A |
Gly98Asp |
M0190806 |
PLHCLJLP_00085 |
70903 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
451T>C |
Ser151Pro |
M0190807 |
PLHCLJLP_00089 |
74110 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
482A>G |
Asn161Ser |
M0190808 |
PLHCLJLP_00089 |
74112 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
480C>T |
Val160Val |
M0190809 |
PLHCLJLP_00089 |
74121 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
471G>C |
Pro157Pro |
M0190810 |
PLHCLJLP_00089 |
74124 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
468C>T |
Ser156Ser |
M0190811 |
PLHCLJLP_00089 |
74154 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
438T>C |
Thr146Thr |
M0190812 |
PLHCLJLP_00089 |
74160 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
432T>C |
Asp144Asp |
M0190813 |
PLHCLJLP_00089 |
74283 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
309G>A |
Ala103Ala |
M0190814 |
PLHCLJLP_00089 |
74289 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
303G>A |
Ala101Ala |
M0190815 |
PLHCLJLP_00089 |
74316 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
276C>T |
Asp92Asp |
M0190816 |
PLHCLJLP_00089 |
74333 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
259A>G |
Thr87Ala |
M0190817 |
PLHCLJLP_00099 |
79812 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
5A>G |
Lys2Arg |
M0190818 |
PLHCLJLP_00090 |
79937 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4918A>T |
None |
M0190819 |
PLHCLJLP_00117 |
95226 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
36G>A |
Thr12Thr |
M0190820 |
PLHCLJLP_00117 |
95229 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
39T>C |
Ile13Ile |
M0190821 |
PLHCLJLP_00117 |
95370 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
180G>A |
Gln60Gln |
M0190822 |
PLHCLJLP_00117 |
95421 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
231T>C |
Gly77Gly |
M0190823 |
PLHCLJLP_00117 |
95463 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
273C>T |
Asp91Asp |
M0190824 |
PLHCLJLP_00119 |
95912 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
197G>A |
Cys66Tyr |
M0190825 |
PLHCLJLP_00119 |
95998 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
111C>A |
Pro37Pro |
M0190826 |
PLHCLJLP_00119 |
96000 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
109C>T |
Pro37Ser |
M0190827 |
PLHCLJLP_00119 |
96004 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
105T>G |
Ala35Ala |
M0190828 |
PLHCLJLP_00121 |
97643 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
852T>C |
Arg284Arg |
M0190829 |
PLHCLJLP_00122 |
98352 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
103T>G |
Tyr35Asp |
M0190830 |
PLHCLJLP_00122 |
98362 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
93G>T |
Met31Ile |
M0190831 |
PLHCLJLP_00122 |
98363 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
92T>C |
Met31Thr |
M0190832 |
PLHCLJLP_00122 |
98386 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
69G>A |
Lys23Lys |
M0190833 |
PLHCLJLP_00122 |
98442 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
13G>A |
Gly5Arg |
M0190834 |
PLHCLJLP_00122 |
98443 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
12A>G |
Thr4Thr |
M0190835 |
PLHCLJLP_00122 |
98448 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
7G>A |
Ala3Thr |
M0190836 |
PLHCLJLP_00123 |
98493 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
969T>C |
Asp323Asp |
M0190837 |
PLHCLJLP_00125 |
99909 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
241C>T |
Leu81Leu |
M0190838 |
PLHCLJLP_00125 |
99976 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
174C>T |
Asp58Asp |
M0190839 |
PLHCLJLP_00125 |
100039 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
111A>G |
Leu37Leu |
M0190840 |
PLHCLJLP_00126 |
100370 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
469A>G |
Ile157Val |
M0190841 |
PLHCLJLP_00140 |
110456 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
210A>G |
Gln70Gln |
M0190842 |
PLHCLJLP_00113 |
90963 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
1059T>C |
Tyr353Tyr |
M0190843 |
PLHCLJLP_00119 |
101064 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4956T>C |
None |
M0190844 |
PLHCLJLP_00119 |
101069 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4961A>G |
None |
M0190845 |
PLHCLJLP_00119 |
101071 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4963T>C |
None |
M0190846 |
PLHCLJLP_00135 |
106531 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
573A>G |
Glu191Glu |
M0190847 |
PLHCLJLP_00135 |
106538 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
580C>T |
Leu194Leu |
M0190848 |
PLHCLJLP_00135 |
106561 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
603G>T |
Gln201His |
M0190849 |
PLHCLJLP_00137 |
107411 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
207C>T |
Ile69Ile |
M0190850 |
PLHCLJLP_00142 |
111651 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
395A>C |
Glu132Ala |
M0190851 |
PLHCLJLP_00145 |
113986 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
468T>C |
Pro156Pro |
M0190852 |
PLHCLJLP_00146 |
114152 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
101C>T |
Ala34Val |
M0190853 |
PLHCLJLP_00146 |
114174 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
123C>G |
Thr41Thr |
M0190854 |
PLHCLJLP_00146 |
114183 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
132C>G |
Thr44Thr |
M0190855 |
PLHCLJLP_00146 |
114184 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
133C>T |
Leu45Leu |
M0190856 |
PLHCLJLP_00146 |
114207 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
156C>T |
Asp52Asp |
M0190857 |
PLHCLJLP_00146 |
114216 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
165C>T |
Gly55Gly |
M0190858 |
PLHCLJLP_00146 |
114217 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
166A>G |
Lys56Glu |
M0190859 |
PLHCLJLP_00149 |
119793 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
132A>C |
Ser44Ser |
M0190860 |
PLHCLJLP_00090 |
74750 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
270C>T |
Asp90Asp |
M0190861 |
PLHCLJLP_00095 |
78556 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
53G>A |
Arg18Gln |
M0190862 |
PLHCLJLP_00098 |
83993 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4356A>G |
None |
M0190863 |
PLHCLJLP_00099 |
84750 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4934A>G |
None |
M0190864 |
PLHCLJLP_00101 |
84826 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3025G>A |
None |
M0190865 |
PLHCLJLP_00101 |
84827 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3026A>G |
None |
M0190866 |
PLHCLJLP_00106 |
84922 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2819G>A |
Arg940His |
M0190867 |
PLHCLJLP_00106 |
84924 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2817T>G |
Thr939Thr |
M0190868 |
PLHCLJLP_00106 |
84951 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2790C>T |
Arg930Arg |
M0190869 |
PLHCLJLP_00106 |
84956 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
2785A>G |
Thr929Ala |
M0190870 |
PLHCLJLP_00106 |
84960 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2781C>T |
Asp927Asp |
M0190871 |
PLHCLJLP_00106 |
84974 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
2767C>T |
Leu923Leu |
M0190872 |
PLHCLJLP_00106 |
85005 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2736C>T |
Ile912Ile |
M0190873 |
PLHCLJLP_00106 |
85007 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2734A>G |
Ile912Val |
M0190874 |
PLHCLJLP_00106 |
86265 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1476A>C |
Ala492Ala |
M0190875 |
PLHCLJLP_00106 |
86454 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1287A>G |
Gln429Gln |
M0190876 |
PLHCLJLP_00106 |
86571 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1170C>A |
Ile390Ile |
M0190877 |
PLHCLJLP_00106 |
86574 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1167A>G |
Lys389Lys |
M0190878 |
PLHCLJLP_00106 |
86580 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1161T>C |
His387His |
M0190879 |
PLHCLJLP_00106 |
86583 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1158G>C |
Leu386Phe |
M0190880 |
PLHCLJLP_00106 |
86585 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1156T>C |
Leu386Leu |
M0190881 |
PLHCLJLP_00106 |
86586 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1155G>A |
Lys385Lys |
M0190882 |
PLHCLJLP_00106 |
86725 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1016A>G |
Lys339Arg |
M0190883 |
PLHCLJLP_00106 |
86823 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
918T>C |
Ala306Ala |
M0190884 |
PLHCLJLP_00106 |
86880 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
861T>C |
Gly287Gly |
M0190885 |
PLHCLJLP_00107 |
87894 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
409A>G |
Thr137Ala |
M0190886 |
PLHCLJLP_00114 |
92200 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
948A>G |
Ala316Ala |
M0190887 |
PLHCLJLP_00114 |
92203 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
945C>T |
Asp315Asp |
M0190888 |
PLHCLJLP_00142 |
111207 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-50G>A |
None |
M0190889 |
PLHCLJLP_00146 |
114372 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
321C>T |
Asp107Asp |
M0190890 |
PLHCLJLP_00147 |
114778 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
270A>G |
Leu90Leu |
M0190891 |
PLHCLJLP_00147 |
114781 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
273C>T |
Leu91Leu |
M0190892 |
PLHCLJLP_00147 |
118714 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
4206G>A |
Gly1402Gly |
M0190893 |
PLHCLJLP_00148 |
119051 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
217G>A |
Ala73Thr |
M0190894 |
PLHCLJLP_00149 |
120808 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1147C>A |
Gln383Lys |
M0190895 |
PLHCLJLP_00152 |
122665 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1269T>C |
His423His |
M0190896 |
PLHCLJLP_00152 |
122719 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1215C>G |
Pro405Pro |
M0190897 |
PLHCLJLP_00152 |
122722 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
1212T>G |
Leu404Leu |
M0190898 |
PLHCLJLP_00152 |
122974 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
960G>A |
Thr320Thr |
M0190899 |
PLHCLJLP_00152 |
122989 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
945A>G |
Val315Val |
M0190900 |
PLHCLJLP_00152 |
123044 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
890T>C |
Leu297Pro |
M0190901 |
PLHCLJLP_00155 |
124583 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
200T>C |
Val67Ala |
M0190902 |
PLHCLJLP_00156 |
125451 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
495G>C |
Thr165Thr |
M0190903 |
PLHCLJLP_00156 |
125466 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
480G>A |
Ala160Ala |
M0190904 |
PLHCLJLP_00156 |
125547 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
399T>C |
Arg133Arg |
M0190905 |
PLHCLJLP_00156 |
125551 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
395G>A |
Ser132Asn |
M0190906 |
PLHCLJLP_00156 |
125591 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
355T>C |
Leu119Leu |
M0190907 |
PLHCLJLP_00156 |
125622 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
324T>C |
Cys108Cys |
M0190908 |
PLHCLJLP_00156 |
125625 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
321C>A |
Gly107Gly |
M0190909 |
PLHCLJLP_00156 |
125844 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
102C>A |
Ser34Ser |
M0190910 |
PLHCLJLP_00156 |
125847 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
99A>C |
Ser33Ser |
M0190911 |
PLHCLJLP_00156 |
125851 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
95G>A |
Ser32Asn |
M0190912 |
PLHCLJLP_00156 |
125853 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
93A>C |
Pro31Pro |
M0190913 |
PLHCLJLP_00156 |
125862 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
84G>A |
Val28Val |
M0190914 |
PLHCLJLP_00156 |
125901 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
45C>A |
Gly15Gly |
M0190915 |
PLHCLJLP_00156 |
125904 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
42G>C |
Thr14Thr |
M0190916 |
PLHCLJLP_00150 |
126212 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4281A>C |
None |
M0190917 |
PLHCLJLP_00150 |
126213 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4282G>A |
None |
M0190918 |
PLHCLJLP_00150 |
126214 |
5 |
Gut |
0.10 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4283C>A |
None |
M0190919 |
PLHCLJLP_00150 |
126307 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4376A>G |
None |
M0190920 |
PLHCLJLP_00150 |
126414 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4483C>T |
None |
M0190921 |
PLHCLJLP_00157 |
126817 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
199C>T |
Pro67Ser |
M0190922 |
PLHCLJLP_00157 |
127242 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
624G>A |
Gly208Gly |
M0190923 |
PLHCLJLP_00157 |
127243 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
625C>T |
Arg209Cys |
M0190924 |
PLHCLJLP_00157 |
127260 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
642G>A |
Arg214Arg |
M0190925 |
PLHCLJLP_00157 |
127263 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
645C>T |
Tyr215Tyr |
M0190926 |
PLHCLJLP_00157 |
127830 |
5 |
Gut |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1212T>G |
Ser404Ser |
M0190927 |
PLHCLJLP_00157 |
127904 |
5 |
Gut |
0.10 |
protein_coding |
missense_variant |
MODERATE |
1286C>T |
Ala429Val |
M0190928 |
PLHCLJLP_00157 |
128301 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1683T>C |
Tyr561Tyr |
M0190929 |
PLHCLJLP_00157 |
128796 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
2178A>C |
Ala726Ala |
M0190930 |
PLHCLJLP_00157 |
129208 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
2590A>G |
Asn864Asp |
M0190931 |
PLHCLJLP_00157 |
129633 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
3015C>G |
Leu1005Leu |
M0190932 |
PLHCLJLP_00157 |
129634 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
3016A>C |
Arg1006Arg |
M0190933 |
PLHCLJLP_00157 |
129636 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
3018A>C |
Arg1006Ser |
M0190934 |
PLHCLJLP_00157 |
129661 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3043T>C |
Leu1015Leu |
M0190935 |
PLHCLJLP_00157 |
129690 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3072G>A |
Gln1024Gln |
M0190936 |
PLHCLJLP_00159 |
131120 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
360T>C |
Leu120Leu |
M0190937 |
PLHCLJLP_00159 |
131126 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
366G>A |
Leu122Leu |
M0190938 |
PLHCLJLP_00160 |
132833 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
211C>T |
Pro71Ser |
M0190939 |
PLHCLJLP_00160 |
133152 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
530A>G |
Asp177Gly |
M0190940 |
PLHCLJLP_00160 |
133191 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
569C>T |
Ala190Val |
M0190941 |
PLHCLJLP_00160 |
133304 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
682A>G |
Lys228Glu |
M0190942 |
PLHCLJLP_00160 |
133361 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
739G>A |
Ala247Thr |
M0190943 |
PLHCLJLP_00160 |
133790 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1168G>A |
Ala390Thr |
M0190944 |
PLHCLJLP_00160 |
133849 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1227T>C |
Phe409Phe |
M0190945 |
PLHCLJLP_00160 |
133879 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1257T>C |
Asp419Asp |
M0190946 |
PLHCLJLP_00160 |
133889 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1267A>G |
Thr423Ala |
M0190947 |
PLHCLJLP_00160 |
134001 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1379A>T |
Asn460Ile |
M0190948 |
PLHCLJLP_00160 |
134022 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1400G>A |
Gly467Glu |
M0190949 |
PLHCLJLP_00160 |
134288 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
1666A>G |
Met556Val |
M0190950 |
PLHCLJLP_00160 |
134425 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
1803A>G |
Glu601Glu |
M0190951 |
PLHCLJLP_00160 |
134644 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2022A>G |
Lys674Lys |
M0190952 |
PLHCLJLP_00160 |
134779 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2157T>C |
Thr719Thr |
M0190953 |
PLHCLJLP_00160 |
134832 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2210A>C |
Gln737Pro |
M0190954 |
PLHCLJLP_00163 |
137410 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
252A>C |
Arg84Arg |
M0190955 |
PLHCLJLP_00163 |
137412 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
254C>A |
Ala85Glu |
M0190956 |
PLHCLJLP_00163 |
137413 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
255A>C |
Ala85Ala |
M0190957 |
PLHCLJLP_00163 |
137416 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
258C>A |
Asp86Glu |
M0190958 |
PLHCLJLP_00163 |
137428 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
270A>C |
Ala90Ala |
M0190959 |
PLHCLJLP_00163 |
137431 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
273A>C |
Gly91Gly |
M0190960 |
PLHCLJLP_00163 |
137479 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
321A>G |
Lys107Lys |
M0190961 |
PLHCLJLP_00163 |
137575 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
417C>T |
Asp139Asp |
M0190962 |
PLHCLJLP_00163 |
137620 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
462T>C |
Pro154Pro |
M0190963 |
PLHCLJLP_00163 |
137622 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
464C>T |
Ala155Val |
M0190964 |
PLHCLJLP_00163 |
137656 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
498C>T |
Ala166Ala |
M0190965 |
PLHCLJLP_00163 |
137668 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
510C>T |
Asp170Asp |
M0190966 |
PLHCLJLP_00161 |
138099 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1936C>G |
None |
M0190967 |
PLHCLJLP_00161 |
138256 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2093T>C |
None |
M0190968 |
PLHCLJLP_00161 |
138272 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2109T>C |
None |
M0190969 |
PLHCLJLP_00161 |
138276 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2113T>C |
None |
M0190970 |
PLHCLJLP_00164 |
138545 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
198A>G |
Arg66Arg |
M0190971 |
PLHCLJLP_00164 |
138611 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
264A>G |
Ala88Ala |
M0190972 |
PLHCLJLP_00164 |
138616 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
269T>C |
Val90Ala |
M0190973 |
PLHCLJLP_00164 |
138752 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
405G>A |
Gly135Gly |
M0190974 |
PLHCLJLP_00164 |
138773 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
426T>C |
Ile142Ile |
M0190975 |
PLHCLJLP_00164 |
139145 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
798T>C |
His266His |
M0190976 |
PLHCLJLP_00165 |
139281 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
32T>C |
Val11Ala |
M0190977 |
PLHCLJLP_00167 |
142581 |
4 |
Gut |
0.08 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-122A>G |
None |
M0190978 |
PLHCLJLP_00167 |
142671 |
3 |
Gut |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-212G>A |
None |
M0190979 |
PLHCLJLP_00168 |
142725 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
45C>T |
Pro15Pro |
M0190980 |
PLHCLJLP_00168 |
142740 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
60C>T |
Asp20Asp |
M0190981 |
PLHCLJLP_00168 |
142803 |
4 |
Gut |
0.08 |
protein_coding |
synonymous_variant |
LOW |
123A>G |
Arg41Arg |
M0190982 |
PLHCLJLP_00168 |
142933 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
253C>A |
Leu85Ile |
M0190983 |
PLHCLJLP_00169 |
143746 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
199A>G |
Lys67Glu |
M0190984 |
PLHCLJLP_00172 |
144293 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
135A>G |
Ala45Ala |
M0190985 |
PLHCLJLP_00174 |
144584 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
60G>A |
Val20Val |
M0190986 |
PLHCLJLP_00174 |
144590 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
66T>C |
Asn22Asn |
M0190987 |
PLHCLJLP_00174 |
144591 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
67C>T |
Pro23Ser |
M0190988 |
PLHCLJLP_00044 |
40076 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2111G>A |
Gly704Glu |
M0190989 |
PLHCLJLP_00044 |
40379 |
3 |
Gut |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2414G>C |
Gly805Ala |
M0190990 |
PLHCLJLP_00044 |
41505 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3540A>G |
Glu1180Glu |
M0190991 |
PLHCLJLP_00044 |
47212 |
3 |
Gut |
0.06 |
protein_coding |
downstream_gene_variant |
MODIFIER |
*4624A>G |
None |
M0190992 |
PLHCLJLP_00106 |
84990 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2751C>T |
Phe917Phe |
M0190993 |
PLHCLJLP_00157 |
128694 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2076G>A |
Ala692Ala |
M0190994 |
PLHCLJLP_00157 |
128745 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2127G>A |
Gly709Gly |
M0190995 |
PLHCLJLP_00157 |
128829 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2211T>C |
Gly737Gly |
M0190996 |
PLHCLJLP_00157 |
128835 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2217A>G |
Glu739Glu |
M0190997 |
PLHCLJLP_00157 |
128880 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2262G>A |
Pro754Pro |
M0190998 |
PLHCLJLP_00044 |
38723 |
6 |
Gut |
0.13 |
protein_coding |
missense_variant |
MODERATE |
758G>A |
Arg253Lys |
M0190999 |
PLHCLJLP_00044 |
38724 |
6 |
Gut |
0.13 |
protein_coding |
synonymous_variant |
LOW |
759A>G |
Arg253Arg |
M0191000 |
PLHCLJLP_00044 |
39059 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1094A>G |
Asn365Ser |
M0191001 |
PLHCLJLP_00044 |
41229 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
3264G>C |
Gly1088Gly |
M0191002 |
PLHCLJLP_00044 |
38073 |
3 |
Gut |
0.06 |
protein_coding |
synonymous_variant |
LOW |
108T>C |
Tyr36Tyr |
M0191003 |
PLHCLJLP_00044 |
39133 |
4 |
Gut |
0.08 |
protein_coding |
missense_variant |
MODERATE |
1168G>T |
Ala390Ser |
Analysis of virulence factors contributing to bacterial pathogenicity
This table presents virulence factors identified within the plasmid cluster.
Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.
Gene Name |
vf_gene_id |
vf_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
vf_category |
gene_description |
condition |
Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact
This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.
Gene Name |
compound |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
group |
Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents
This table presents antimicrobial resistance genes identified within the plasmid cluster.
Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.
Gene Name |
aro_accession |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
drug_class |
amr_gene_family |
resistance_mechanism |
Analysis of pathogenicity genes to explore pathogen-host interactions
This table presents host pathogen-host interactions within the plasmid cluster.
Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.
Gene Name |
phi_molconn_id |
host gene_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
host_descripton |
disease_name |
function |
phenotype_of_mutant |
Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation
This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.
Gene Name |
cazy_id |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification
This table presents transport proteins within the plasmid cluster.
Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.
Gene Name |
tcid |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
class_field |
class_term |
subclass |
subclass_term |
family |
family_term |