Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C966
  Reference Plasmid   NZ_CP085731.1
  Reference Plasmid Size   170174
  Reference Plasmid GC Content   0.52
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0191130 FACMJBHK_00033 32257 10 Gut 0.77 protein_coding synonymous_variant LOW 111A>C Arg37Arg
M0191131 FACMJBHK_00033 32293 9 Gut 0.69 protein_coding synonymous_variant LOW 147C>T Gly49Gly
M0191132 FACMJBHK_00033 32302 9 Gut 0.69 protein_coding synonymous_variant LOW 156C>T His52His
M0191133 FACMJBHK_00033 32308 9 Gut 0.69 protein_coding synonymous_variant LOW 162T>C Tyr54Tyr
M0191134 FACMJBHK_00033 32311 9 Gut 0.69 protein_coding synonymous_variant LOW 165C>T Phe55Phe
M0191135 FACMJBHK_00033 32320 9 Gut 0.69 protein_coding synonymous_variant LOW 174T>C Cys58Cys
M0191136 FACMJBHK_00033 32323 9 Gut 0.69 protein_coding synonymous_variant LOW 177T>C Tyr59Tyr
M0191137 FACMJBHK_00033 32332 9 Gut 0.69 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0191138 FACMJBHK_00033 32422 9 Gut 0.69 protein_coding missense_variant MODERATE 276C>A Asp92Glu
M0191139 FACMJBHK_00033 32485 11 Gut 0.85 protein_coding synonymous_variant LOW 339A>G Lys113Lys
M0191140 FACMJBHK_00033 32488 11 Gut 0.85 protein_coding synonymous_variant LOW 342T>C Ser114Ser
M0191141 FACMJBHK_00034 32547 5 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -232G>A None
M0191142 FACMJBHK_00034 32596 11 Gut 0.85 protein_coding upstream_gene_variant MODIFIER -183C>G None
M0191143 FACMJBHK_00034 32598 10 Gut 0.77 protein_coding upstream_gene_variant MODIFIER -181A>G None
M0191144 FACMJBHK_00034 32622 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -157T>C None
M0191145 FACMJBHK_00034 32683 11 Gut 0.85 protein_coding upstream_gene_variant MODIFIER -96T>C None
M0191146 FACMJBHK_00034 32697 5 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -82G>T None
M0191147 FACMJBHK_00034 32703 5 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -76C>T None
M0191148 FACMJBHK_00034 32704 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -75C>T None
M0191149 FACMJBHK_00034 32715 10 Gut 0.77 protein_coding upstream_gene_variant MODIFIER -64A>G None
M0191150 FACMJBHK_00034 33135 10 Gut 0.77 protein_coding synonymous_variant LOW 357T>C Asn119Asn
M0191151 FACMJBHK_00034 33147 10 Gut 0.77 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0191152 FACMJBHK_00034 33180 10 Gut 0.77 protein_coding synonymous_variant LOW 402C>T Ser134Ser
M0191153 FACMJBHK_00034 33186 10 Gut 0.77 protein_coding synonymous_variant LOW 408C>T Asn136Asn
M0191154 FACMJBHK_00034 33204 10 Gut 0.77 protein_coding synonymous_variant LOW 426C>T Arg142Arg
M0191155 FACMJBHK_00034 33216 10 Gut 0.77 protein_coding synonymous_variant LOW 438T>C Cys146Cys
M0191156 FACMJBHK_00034 33237 10 Gut 0.77 protein_coding synonymous_variant LOW 459C>T Arg153Arg
M0191157 FACMJBHK_00034 33240 10 Gut 0.77 protein_coding synonymous_variant LOW 462G>T Pro154Pro
M0191158 FACMJBHK_00034 33474 6 Gut 0.46 protein_coding synonymous_variant LOW 696G>A Ala232Ala
M0191159 FACMJBHK_00034 33483 10 Gut 0.77 protein_coding synonymous_variant LOW 705C>G Gly235Gly
M0191160 FACMJBHK_00034 33627 4 Gut 0.31 protein_coding synonymous_variant LOW 849A>G Lys283Lys
M0191161 FACMJBHK_00034 33681 4 Gut 0.31 protein_coding synonymous_variant LOW 903C>A Arg301Arg
M0191162 FACMJBHK_00034 33769 4 Gut 0.31 protein_coding missense_variant MODERATE 991T>G Leu331Val
M0191163 FACMJBHK_00034 33783 4 Gut 0.31 protein_coding synonymous_variant LOW 1005T>A Ser335Ser
M0191164 FACMJBHK_00034 33795 4 Gut 0.31 protein_coding synonymous_variant LOW 1017A>T Ala339Ala
M0191165 FACMJBHK_00034 33810 4 Gut 0.31 protein_coding missense_variant MODERATE 1032G>C Glu344Asp
M0191166 FACMJBHK_00034 33820 4 Gut 0.31 protein_coding missense_variant MODERATE 1042C>A Arg348Ser
M0191167 FACMJBHK_00034 33822 4 Gut 0.31 protein_coding synonymous_variant LOW 1044T>G Arg348Arg
M0191168 FACMJBHK_00034 33831 4 Gut 0.31 protein_coding synonymous_variant LOW 1053G>T Val351Val
M0191169 FACMJBHK_00034 33833 10 Gut 0.77 protein_coding missense_variant MODERATE 1055T>C Val352Ala
M0191170 FACMJBHK_00034 33874 10 Gut 0.77 protein_coding missense_variant MODERATE 1096G>A Glu366Lys
M0191171 FACMJBHK_00034 33875 10 Gut 0.77 protein_coding missense_variant MODERATE 1097A>C Glu366Ala
M0191172 FACMJBHK_00034 33876 4 Gut 0.31 protein_coding synonymous_variant LOW 1098A>G Glu366Glu
M0191173 FACMJBHK_00034 33901 5 Gut 0.38 protein_coding synonymous_variant LOW 1123C>T Leu375Leu
M0191174 FACMJBHK_00034 33921 4 Gut 0.31 protein_coding synonymous_variant LOW 1143G>A Gln381Gln
M0191175 FACMJBHK_00034 33927 8 Gut 0.62 protein_coding synonymous_variant LOW 1149A>G Ala383Ala
M0191176 FACMJBHK_00034 33714 5 Gut 0.38 protein_coding synonymous_variant LOW 936G>A Arg312Arg
M0191177 FACMJBHK_00034 33793 6 Gut 0.46 protein_coding missense_variant MODERATE 1015G>T Ala339Ser
M0191178 FACMJBHK_00034 33913 4 Gut 0.31 protein_coding synonymous_variant LOW 1135C>A Arg379Arg
M0191179 FACMJBHK_00034 33918 4 Gut 0.31 protein_coding synonymous_variant LOW 1140G>A Gln380Gln
M0191180 FACMJBHK_00034 33922 4 Gut 0.31 protein_coding missense_variant MODERATE 1144A>C Ile382Leu
M0191181 FACMJBHK_00034 33969 5 Gut 0.38 protein_coding synonymous_variant LOW 1191C>T Ser397Ser
M0191182 FACMJBHK_00034 33972 5 Gut 0.38 protein_coding missense_variant MODERATE 1194G>T Glu398Asp
M0191183 FACMJBHK_00034 34002 8 Gut 0.62 protein_coding synonymous_variant LOW 1224A>G Thr408Thr
M0191184 FACMJBHK_00034 34068 4 Gut 0.31 protein_coding missense_variant MODERATE 1290A>T Glu430Asp
M0191185 FACMJBHK_00034 34086 7 Gut 0.54 protein_coding synonymous_variant LOW 1308G>A Ala436Ala
M0191186 FACMJBHK_00034 34087 4 Gut 0.31 protein_coding missense_variant MODERATE 1309A>G Lys437Glu
M0191187 FACMJBHK_00034 34092 4 Gut 0.31 protein_coding synonymous_variant LOW 1314A>G Leu438Leu
M0191188 FACMJBHK_00034 34155 7 Gut 0.54 protein_coding synonymous_variant LOW 1377G>A Lys459Lys
M0191189 FACMJBHK_00034 34163 8 Gut 0.62 protein_coding missense_variant MODERATE 1385G>A Gly462Glu
M0191190 FACMJBHK_00034 34164 8 Gut 0.62 protein_coding synonymous_variant LOW 1386G>A Gly462Gly
M0191191 FACMJBHK_00034 32862 4 Gut 0.31 protein_coding synonymous_variant LOW 84G>A Lys28Lys
M0191192 FACMJBHK_00034 32883 4 Gut 0.31 protein_coding synonymous_variant LOW 105C>T Thr35Thr
M0191193 FACMJBHK_00034 34104 3 Gut 0.23 protein_coding synonymous_variant LOW 1326G>T Leu442Leu
M0191194 FACMJBHK_00034 34152 3 Gut 0.23 protein_coding synonymous_variant LOW 1374G>A Ala458Ala
M0191195 FACMJBHK_00034 34166 3 Gut 0.23 protein_coding missense_variant MODERATE 1388G>A Arg463Gln
M0191196 FACMJBHK_00034 34206 3 Gut 0.23 protein_coding synonymous_variant LOW 1428A>G Thr476Thr
M0191197 FACMJBHK_00034 34215 4 Gut 0.31 protein_coding synonymous_variant LOW 1437A>G Ala479Ala
M0191198 FACMJBHK_00034 34218 4 Gut 0.31 protein_coding synonymous_variant LOW 1440C>A Ser480Ser
M0191199 FACMJBHK_00034 34241 3 Gut 0.23 protein_coding missense_variant MODERATE 1463G>A Arg488His
M0191200 FACMJBHK_00034 34260 4 Gut 0.31 protein_coding synonymous_variant LOW 1482A>C Thr494Thr
M0191201 FACMJBHK_00034 34275 3 Gut 0.23 protein_coding synonymous_variant LOW 1497G>A Gln499Gln
M0191202 FACMJBHK_00034 34278 4 Gut 0.31 protein_coding synonymous_variant LOW 1500C>T Asn500Asn
M0191203 FACMJBHK_00034 34305 4 Gut 0.31 protein_coding missense_variant MODERATE 1527T>G Asn509Lys
M0191204 FACMJBHK_00034 34319 3 Gut 0.23 protein_coding missense_variant MODERATE 1541T>C Leu514Ser
M0191205 FACMJBHK_00035 34333 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -60A>G None
M0191206 FACMJBHK_00035 34349 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -44T>C None
M0191207 FACMJBHK_00035 34375 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -18A>G None
M0191208 FACMJBHK_00035 34402 4 Gut 0.31 protein_coding missense_variant MODERATE 10G>A Val4Ile
M0191209 FACMJBHK_00035 34403 4 Gut 0.31 protein_coding missense_variant MODERATE 11T>G Val4Gly
M0191210 FACMJBHK_00035 34404 4 Gut 0.31 protein_coding synonymous_variant LOW 12A>C Val4Val
M0191211 FACMJBHK_00035 34423 5 Gut 0.38 protein_coding missense_variant MODERATE 31A>C Asn11His
M0191212 FACMJBHK_00035 34436 5 Gut 0.38 protein_coding missense_variant MODERATE 44G>A Arg15Lys
M0191213 FACMJBHK_00035 34443 5 Gut 0.38 protein_coding synonymous_variant LOW 51A>T Gly17Gly
M0191214 FACMJBHK_00035 34458 5 Gut 0.38 protein_coding synonymous_variant LOW 66T>G Arg22Arg
M0191215 FACMJBHK_00035 34464 4 Gut 0.31 protein_coding synonymous_variant LOW 72G>A Arg24Arg
M0191216 FACMJBHK_00035 34491 5 Gut 0.38 protein_coding synonymous_variant LOW 99C>G Arg33Arg
M0191217 FACMJBHK_00033 32342 3 Gut 0.23 protein_coding missense_variant MODERATE 196C>A Leu66Met
M0191218 FACMJBHK_00033 32362 3 Gut 0.23 protein_coding synonymous_variant LOW 216G>A Ser72Ser
M0191219 FACMJBHK_00034 33552 3 Gut 0.23 protein_coding synonymous_variant LOW 774A>C Thr258Thr
M0191220 FACMJBHK_00034 33561 3 Gut 0.23 protein_coding synonymous_variant LOW 783G>A Gly261Gly
M0191221 FACMJBHK_00034 33978 3 Gut 0.23 protein_coding synonymous_variant LOW 1200G>A Glu400Glu
M0191222 FACMJBHK_00034 34011 3 Gut 0.23 protein_coding synonymous_variant LOW 1233G>A Ser411Ser
M0191223 FACMJBHK_00034 34150 4 Gut 0.31 protein_coding missense_variant MODERATE 1372G>A Ala458Thr
M0191224 FACMJBHK_00029 28160 4 Gut 0.31 protein_coding synonymous_variant LOW 216A>G Ala72Ala
M0191225 FACMJBHK_00029 28175 4 Gut 0.31 protein_coding synonymous_variant LOW 231A>C Gly77Gly
M0191226 FACMJBHK_00029 28397 3 Gut 0.23 protein_coding synonymous_variant LOW 453G>A Val151Val
M0191227 FACMJBHK_00029 28403 4 Gut 0.31 protein_coding synonymous_variant LOW 459A>G Lys153Lys
M0191228 FACMJBHK_00029 28863 4 Gut 0.31 protein_coding missense_variant MODERATE 919G>T Val307Leu
M0191229 FACMJBHK_00029 28895 4 Gut 0.31 protein_coding missense_variant MODERATE 951T>G Asp317Glu
M0191230 FACMJBHK_00029 28985 3 Gut 0.23 protein_coding synonymous_variant LOW 1041G>A Lys347Lys
M0191231 FACMJBHK_00029 29060 3 Gut 0.23 protein_coding synonymous_variant LOW 1116C>T Gly372Gly
M0191232 FACMJBHK_00029 29097 3 Gut 0.23 protein_coding missense_variant MODERATE 1153G>A Val385Ile
M0191233 FACMJBHK_00029 29102 3 Gut 0.23 protein_coding synonymous_variant LOW 1158T>C Thr386Thr
M0191234 FACMJBHK_00029 29195 3 Gut 0.23 protein_coding synonymous_variant LOW 1251T>C Cys417Cys
M0191235 FACMJBHK_00029 29222 3 Gut 0.23 protein_coding synonymous_variant LOW 1278G>A Glu426Glu
M0191236 FACMJBHK_00029 29291 3 Gut 0.23 protein_coding synonymous_variant LOW 1347T>A Ile449Ile
M0191237 FACMJBHK_00029 29298 3 Gut 0.23 protein_coding synonymous_variant LOW 1354T>C Leu452Leu
M0191238 FACMJBHK_00029 29330 3 Gut 0.23 protein_coding synonymous_variant LOW 1386T>C Asn462Asn
M0191239 FACMJBHK_00029 29366 3 Gut 0.23 protein_coding synonymous_variant LOW 1422A>G Glu474Glu
M0191240 FACMJBHK_00029 29379 3 Gut 0.23 protein_coding missense_variant MODERATE 1435A>G Thr479Ala
M0191241 FACMJBHK_00029 29423 3 Gut 0.23 protein_coding synonymous_variant LOW 1479T>C Gly493Gly
M0191242 FACMJBHK_00029 29507 3 Gut 0.23 protein_coding missense_variant MODERATE 1563G>A Met521Ile
M0191243 FACMJBHK_00029 29508 3 Gut 0.23 protein_coding synonymous_variant LOW 1564C>T Leu522Leu
M0191244 FACMJBHK_00029 29537 3 Gut 0.23 protein_coding synonymous_variant LOW 1593A>T Val531Val
M0191245 FACMJBHK_00029 29546 3 Gut 0.23 protein_coding synonymous_variant LOW 1602G>A Ala534Ala
M0191246 FACMJBHK_00029 29549 3 Gut 0.23 protein_coding synonymous_variant LOW 1605C>T Val535Val
M0191247 FACMJBHK_00029 29663 3 Gut 0.23 protein_coding synonymous_variant LOW 1719C>T Ala573Ala
M0191248 FACMJBHK_00025 29824 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -4390A>C None
M0191249 FACMJBHK_00025 29848 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4414T>A None
M0191250 FACMJBHK_00025 29852 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4418T>A None
M0191251 FACMJBHK_00025 29855 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4421C>T None
M0191252 FACMJBHK_00025 29863 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4429T>G None
M0191253 FACMJBHK_00025 29869 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4435A>T None
M0191254 FACMJBHK_00025 29879 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4445T>C None
M0191255 FACMJBHK_00025 29908 4 Gut 0.31 protein_coding upstream_gene_variant MODIFIER -4474T>C None
M0191256 FACMJBHK_00025 30138 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4704G>A None
M0191257 FACMJBHK_00025 30168 3 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4734C>T None
M0191258 FACMJBHK_00030 30205 3 Gut 0.23 protein_coding synonymous_variant LOW 33G>A Thr11Thr
M0191259 FACMJBHK_00030 30208 3 Gut 0.23 protein_coding synonymous_variant LOW 36C>T Val12Val
M0191260 FACMJBHK_00030 30234 3 Gut 0.23 protein_coding missense_variant MODERATE 62C>G Thr21Arg
M0191261 FACMJBHK_00030 30271 3 Gut 0.23 protein_coding synonymous_variant LOW 99A>G Arg33Arg
M0191262 FACMJBHK_00029 28121 3 Gut 0.23 protein_coding synonymous_variant LOW 177C>T Gly59Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
FACMJBHK_00003 ARO:3002312 100 5.54e-211 1 293 1.0000 1.0000 monobactam KPC beta-lactamase antibiotic inactivation
FACMJBHK_00013 ARO:3002641 98.5 6.49e-208 1 271 1.0000 1.0000 aminoglycoside antibiotic APH(3') antibiotic inactivation
FACMJBHK_00031 ARO:3002635 99.3 4.25e-218 1 299 1.0000 1.0000 aminoglycoside antibiotic APH(2'') antibiotic inactivation
FACMJBHK_00032 ARO:3004629 100 5.08e-134 1 178 1.0000 1.0000 aminoglycoside antibiotic AAC(6') antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FACMJBHK_00115 QDC33125.1|GH23 100 5.28e-123 1 177 1 1
FACMJBHK_00118 AIO10245.2|GH23 100 0 1 1204 1 1
FACMJBHK_00120 AIO10552.2|GH23 100 6.52e-238 9 346 0.9769 1
FACMJBHK_00170 QPG02256.1|GH23 100 9.39e-116 1 161 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term