Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C967
  Reference Plasmid   NZ_CP085934.1
  Reference Plasmid Size   58953
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0191263 CPCNNOND_00019 20193 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -623T>C None
M0191264 CPCNNOND_00019 20275 13 Gut 0.43 protein_coding upstream_gene_variant MODIFIER -705A>T None
M0191265 CPCNNOND_00019 20294 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -724G>T None
M0191266 CPCNNOND_00021 20505 12 Gut 0.40 protein_coding synonymous_variant LOW 111C>T Asn37Asn
M0191267 CPCNNOND_00021 20598 17 Gut 0.57 protein_coding synonymous_variant LOW 204G>T Ala68Ala
M0191268 CPCNNOND_00021 20820 17 Gut 0.57 protein_coding synonymous_variant LOW 426T>C Tyr142Tyr
M0191269 CPCNNOND_00021 20877 14 Gut 0.47 protein_coding synonymous_variant LOW 483T>A Ala161Ala
M0191270 CPCNNOND_00021 20898 6 Gut 0.20 protein_coding synonymous_variant LOW 504T>A Pro168Pro
M0191271 CPCNNOND_00021 20925 16 Gut 0.53 protein_coding synonymous_variant LOW 531A>G Lys177Lys
M0191272 CPCNNOND_00021 20970 17 Gut 0.57 protein_coding synonymous_variant LOW 576T>C Phe192Phe
M0191273 CPCNNOND_00022 21329 17 Gut 0.57 protein_coding synonymous_variant LOW 36C>T Gly12Gly
M0191274 CPCNNOND_00019 21752 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2182G>T None
M0191275 CPCNNOND_00019 21772 8 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2202A>G None
M0191276 CPCNNOND_00019 21791 15 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2221C>T None
M0191277 CPCNNOND_00019 21800 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2230C>T None
M0191278 CPCNNOND_00023 22312 14 Gut 0.47 protein_coding synonymous_variant LOW 348T>C Ser116Ser
M0191279 CPCNNOND_00023 22447 10 Gut 0.33 protein_coding synonymous_variant LOW 483C>T Thr161Thr
M0191280 CPCNNOND_00023 22831 6 Gut 0.20 protein_coding synonymous_variant LOW 867A>T Gly289Gly
M0191281 CPCNNOND_00023 22844 13 Gut 0.43 protein_coding missense_variant MODERATE 880A>G Ile294Val
M0191282 CPCNNOND_00023 22867 14 Gut 0.47 protein_coding synonymous_variant LOW 903A>G Thr301Thr
M0191283 CPCNNOND_00023 22936 14 Gut 0.47 protein_coding synonymous_variant LOW 972T>C Asn324Asn
M0191284 CPCNNOND_00023 22966 14 Gut 0.47 protein_coding missense_variant MODERATE 1002A>T Glu334Asp
M0191285 CPCNNOND_00023 22971 7 Gut 0.23 protein_coding missense_variant MODERATE 1007C>T Thr336Met
M0191286 CPCNNOND_00023 22972 11 Gut 0.37 protein_coding synonymous_variant LOW 1008G>A Thr336Thr
M0191287 CPCNNOND_00023 23062 14 Gut 0.47 protein_coding missense_variant MODERATE 1098T>G His366Gln
M0191288 CPCNNOND_00024 23259 9 Gut 0.30 protein_coding missense_variant MODERATE 152T>C Leu51Ser
M0191289 CPCNNOND_00019 20099 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -529T>G None
M0191290 CPCNNOND_00019 20117 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -547T>C None
M0191291 CPCNNOND_00019 20118 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -548A>G None
M0191292 CPCNNOND_00019 20120 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -550G>A None
M0191293 CPCNNOND_00019 20172 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -602T>C None
M0191294 CPCNNOND_00019 20251 10 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -681T>A None
M0191295 CPCNNOND_00021 20578 4 Gut 0.13 protein_coding missense_variant MODERATE 184T>A Tyr62Asn
M0191296 CPCNNOND_00021 20955 16 Gut 0.53 protein_coding synonymous_variant LOW 561C>T Asp187Asp
M0191297 CPCNNOND_00019 23609 8 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4039G>C None
M0191298 CPCNNOND_00019 23627 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4057C>T None
M0191299 CPCNNOND_00019 23643 8 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4073G>A None
M0191300 CPCNNOND_00019 23674 8 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4104C>T None
M0191301 CPCNNOND_00019 20317 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -747G>A None
M0191302 CPCNNOND_00021 20643 6 Gut 0.20 protein_coding synonymous_variant LOW 249A>G Gly83Gly
M0191303 CPCNNOND_00021 20697 5 Gut 0.17 protein_coding synonymous_variant LOW 303A>T Pro101Pro
M0191304 CPCNNOND_00021 20880 8 Gut 0.27 protein_coding synonymous_variant LOW 486G>A Ala162Ala
M0191305 CPCNNOND_00021 21039 7 Gut 0.23 protein_coding synonymous_variant LOW 645C>T Thr215Thr
M0191306 CPCNNOND_00019 21793 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -2223C>T None
M0191307 CPCNNOND_00023 22720 4 Gut 0.13 protein_coding synonymous_variant LOW 756C>T Leu252Leu
M0191308 CPCNNOND_00023 22852 4 Gut 0.13 protein_coding synonymous_variant LOW 888C>T Phe296Phe
M0191309 CPCNNOND_00023 22903 4 Gut 0.13 protein_coding synonymous_variant LOW 939A>C Ala313Ala
M0191310 CPCNNOND_00023 22922 4 Gut 0.13 protein_coding missense_variant MODERATE 958A>G Asn320Asp
M0191311 CPCNNOND_00024 23343 4 Gut 0.13 protein_coding missense_variant MODERATE 68T>C Val23Ala
M0191312 CPCNNOND_00019 23448 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3878C>T None
M0191313 CPCNNOND_00019 23549 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3979T>A None
M0191314 CPCNNOND_00019 23579 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4009A>G None
M0191315 CPCNNOND_00019 23636 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4066C>T None
M0191316 CPCNNOND_00019 23637 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4067A>T None
M0191317 CPCNNOND_00019 23640 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4070T>C None
M0191318 CPCNNOND_00019 23680 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4110G>T None
M0191319 CPCNNOND_00019 23735 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4165A>T None
M0191320 CPCNNOND_00019 23826 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4256T>A None
M0191321 CPCNNOND_00019 23951 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4381A>T None
M0191322 CPCNNOND_00019 23995 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4425A>C None
M0191323 CPCNNOND_00019 24025 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4455T>C None
M0191324 CPCNNOND_00019 24026 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4456G>A None
M0191325 CPCNNOND_00019 24049 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4479A>T None
M0191326 CPCNNOND_00019 24052 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4482C>T None
M0191327 CPCNNOND_00019 24067 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4497A>T None
M0191328 CPCNNOND_00019 24068 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4498A>T None
M0191329 CPCNNOND_00019 24069 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4499A>T None
M0191330 CPCNNOND_00019 24079 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4509G>T None
M0191331 CPCNNOND_00019 24108 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4538A>G None
M0191332 CPCNNOND_00019 24116 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4546G>A None
M0191333 CPCNNOND_00019 24132 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4562G>A None
M0191334 CPCNNOND_00019 24143 7 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4573A>T None
M0191335 CPCNNOND_00021 20658 4 Gut 0.13 protein_coding synonymous_variant LOW 264A>T Pro88Pro
M0191336 CPCNNOND_00025 24685 4 Gut 0.13 protein_coding missense_variant MODERATE 832A>G Lys278Glu
M0191337 CPCNNOND_00025 24689 4 Gut 0.13 protein_coding synonymous_variant LOW 828A>G Glu276Glu
M0191338 CPCNNOND_00025 24691 4 Gut 0.13 protein_coding missense_variant MODERATE 826G>A Glu276Lys
M0191339 CPCNNOND_00025 24694 4 Gut 0.13 protein_coding missense_variant MODERATE 823A>G Lys275Glu
M0191340 CPCNNOND_00025 24700 4 Gut 0.13 protein_coding missense_variant MODERATE 817G>A Glu273Lys
M0191341 CPCNNOND_00025 24704 4 Gut 0.13 protein_coding synonymous_variant LOW 813G>A Lys271Lys
M0191342 CPCNNOND_00025 24726 4 Gut 0.13 protein_coding missense_variant MODERATE 791A>C Gln264Pro
M0191343 CPCNNOND_00025 24734 4 Gut 0.13 protein_coding synonymous_variant LOW 783T>C Thr261Thr
M0191344 CPCNNOND_00025 24787 4 Gut 0.13 protein_coding missense_variant MODERATE 730A>G Asn244Asp
M0191345 CPCNNOND_00025 24800 4 Gut 0.13 protein_coding synonymous_variant LOW 717G>A Leu239Leu
M0191346 CPCNNOND_00025 24958 4 Gut 0.13 protein_coding missense_variant MODERATE 559G>A Ala187Thr
M0191347 CPCNNOND_00025 24989 4 Gut 0.13 protein_coding synonymous_variant LOW 528C>T Phe176Phe
M0191348 CPCNNOND_00025 25061 4 Gut 0.13 protein_coding synonymous_variant LOW 456C>T Leu152Leu
M0191349 CPCNNOND_00025 25067 4 Gut 0.13 protein_coding missense_variant MODERATE 450G>T Met150Ile
M0191350 CPCNNOND_00025 25243 4 Gut 0.13 protein_coding missense_variant MODERATE 274C>T Pro92Ser
M0191351 CPCNNOND_00019 23849 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4279C>T None
M0191352 CPCNNOND_00019 23907 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4337G>A None
M0191353 CPCNNOND_00019 23908 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4338A>T None
M0191354 CPCNNOND_00019 23929 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4359A>G None
M0191355 CPCNNOND_00019 23930 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4360A>T None
M0191356 CPCNNOND_00019 23942 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4372A>T None
M0191357 CPCNNOND_00019 23943 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4373T>A None
M0191358 CPCNNOND_00019 24142 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4572C>A None
M0191359 CPCNNOND_00019 24176 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4606A>G None
M0191360 CPCNNOND_00019 24231 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4661T>C None
M0191361 CPCNNOND_00024 25675 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -2265T>G None
M0191362 CPCNNOND_00021 20934 3 Gut 0.10 protein_coding synonymous_variant LOW 540T>C Ser180Ser
M0191363 CPCNNOND_00023 22381 7 Gut 0.23 protein_coding synonymous_variant LOW 417G>A Lys139Lys
M0191364 CPCNNOND_00021 20829 3 Gut 0.10 protein_coding synonymous_variant LOW 435C>A Ile145Ile
M0191365 CPCNNOND_00019 21644 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -2074A>T None
M0191366 CPCNNOND_00019 21778 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -2208T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CPCNNOND_00047 UBE41437.1|GT4 78.8 1.22e-217 1 368 0.9946 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term