Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C972
  Reference Plasmid   NZ_CP087161.1
  Reference Plasmid Size   395258
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0105101 FDCGKALL_00205 188931 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4784T>C None
M0105102 FDCGKALL_00212 188961 4 Skin 0.01 protein_coding synonymous_variant LOW 21A>G Arg7Arg
M0105103 FDCGKALL_00212 188982 3 Skin 0.01 protein_coding missense_variant MODERATE 42A>C Lys14Asn
M0105104 FDCGKALL_00212 188991 3 Skin 0.01 protein_coding synonymous_variant LOW 51A>C Leu17Leu
M0105105 FDCGKALL_00212 188994 3 Skin 0.01 protein_coding synonymous_variant LOW 54A>G Gln18Gln
M0105106 FDCGKALL_00406 354899 7 Skin 0.03 protein_coding missense_variant MODERATE 905C>G Thr302Ser
M0105107 FDCGKALL_00406 355587 9 Skin 0.03 protein_coding missense_variant MODERATE 1593C>G His531Gln
M0105108 FDCGKALL_00303 271489 4 Skin 0.01 protein_coding synonymous_variant LOW 78A>T Ala26Ala
M0105109 FDCGKALL_00313 279201 15 Skin 0.06 protein_coding synonymous_variant LOW 120A>G Lys40Lys
M0105110 FDCGKALL_00314 279678 16 Skin 0.06 protein_coding missense_variant MODERATE 254G>A Gly85Glu
M0105111 FDCGKALL_00347 308781 19 Skin 0.07 protein_coding missense_variant MODERATE 172G>T Ala58Ser
M0105112 FDCGKALL_00347 308862 19 Skin 0.07 protein_coding missense_variant MODERATE 253A>G Thr85Ala
M0105113 FDCGKALL_00348 309077 19 Skin 0.07 protein_coding missense_variant MODERATE 172T>C Cys58Arg
M0105114 FDCGKALL_00348 309106 19 Skin 0.07 protein_coding synonymous_variant LOW 201G>T Leu67Leu
M0105115 FDCGKALL_00348 309317 20 Skin 0.07 protein_coding missense_variant MODERATE 412C>T His138Tyr
M0105116 FDCGKALL_00348 309322 20 Skin 0.07 protein_coding synonymous_variant LOW 417A>G Thr139Thr
M0105117 FDCGKALL_00348 309361 20 Skin 0.07 protein_coding synonymous_variant LOW 456A>G Leu152Leu
M0105118 FDCGKALL_00348 309397 20 Skin 0.07 protein_coding synonymous_variant LOW 492G>A Glu164Glu
M0105119 FDCGKALL_00348 309451 20 Skin 0.07 protein_coding synonymous_variant LOW 546C>T Arg182Arg
M0105120 FDCGKALL_00164 150878 27 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3193T>C None
M0105121 FDCGKALL_00171 152645 26 Skin 0.10 protein_coding missense_variant MODERATE 789C>G Ser263Arg
M0105122 FDCGKALL_00288 260632 3 Skin 0.01 protein_coding synonymous_variant LOW 234T>C Thr78Thr
M0105123 FDCGKALL_00161 144291 9 Skin 0.03 protein_coding synonymous_variant LOW 177A>G Gln59Gln
M0105124 FDCGKALL_00155 144639 8 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4741G>T None
M0105125 FDCGKALL_00244 225313 4 Skin 0.01 protein_coding synonymous_variant LOW 2376T>C Asp792Asp
M0105126 FDCGKALL_00244 225331 4 Skin 0.01 protein_coding synonymous_variant LOW 2358C>A Ala786Ala
M0105127 FDCGKALL_00244 225421 4 Skin 0.01 protein_coding synonymous_variant LOW 2268T>C Ile756Ile
M0105128 FDCGKALL_00244 225472 4 Skin 0.01 protein_coding synonymous_variant LOW 2217G>C Gly739Gly
M0105129 FDCGKALL_00244 225499 4 Skin 0.01 protein_coding synonymous_variant LOW 2190C>T Ser730Ser
M0105130 FDCGKALL_00244 225556 4 Skin 0.01 protein_coding synonymous_variant LOW 2133G>A Ser711Ser
M0105131 FDCGKALL_00244 225580 4 Skin 0.01 protein_coding synonymous_variant LOW 2109C>T Asn703Asn
M0105132 FDCGKALL_00244 225583 4 Skin 0.01 protein_coding synonymous_variant LOW 2106A>G Lys702Lys
M0105133 FDCGKALL_00244 225619 4 Skin 0.01 protein_coding synonymous_variant LOW 2070A>T Val690Val
M0105134 FDCGKALL_00244 225649 4 Skin 0.01 protein_coding synonymous_variant LOW 2040A>G Lys680Lys
M0105135 FDCGKALL_00244 225685 4 Skin 0.01 protein_coding synonymous_variant LOW 2004A>G Pro668Pro
M0105136 FDCGKALL_00244 225736 4 Skin 0.01 protein_coding synonymous_variant LOW 1953C>G Gly651Gly
M0105137 FDCGKALL_00244 225754 4 Skin 0.01 protein_coding synonymous_variant LOW 1935G>T Ala645Ala
M0105138 FDCGKALL_00244 226165 6 Skin 0.02 protein_coding synonymous_variant LOW 1524A>G Val508Val
M0105139 FDCGKALL_00244 226267 6 Skin 0.02 protein_coding synonymous_variant LOW 1422T>A Ala474Ala
M0105140 FDCGKALL_00110 95332 26 Skin 0.10 protein_coding missense_variant MODERATE 277A>G Met93Val
M0105141 FDCGKALL_00112 97269 27 Skin 0.10 protein_coding missense_variant MODERATE 268C>A Gln90Lys
M0105142 FDCGKALL_00127 111283 23 Skin 0.09 protein_coding synonymous_variant LOW 141A>G Pro47Pro
M0105143 FDCGKALL_00244 226876 5 Skin 0.02 protein_coding synonymous_variant LOW 813C>A Ile271Ile
M0105144 FDCGKALL_00244 227017 6 Skin 0.02 protein_coding synonymous_variant LOW 672C>T Asn224Asn
M0105145 FDCGKALL_00405 353735 4 Skin 0.01 protein_coding missense_variant MODERATE 50G>C Ser17Thr
M0105146 FDCGKALL_00406 354234 3 Skin 0.01 protein_coding synonymous_variant LOW 240A>C Thr80Thr
M0105147 FDCGKALL_00422 367301 5 Skin 0.02 protein_coding missense_variant MODERATE 242C>T Ala81Val
M0105148 FDCGKALL_00425 369054 7 Skin 0.03 protein_coding synonymous_variant LOW 546A>T Ala182Ala
M0105149 FDCGKALL_00119 103368 3 Skin 0.01 protein_coding missense_variant MODERATE 514A>C Ser172Arg
M0105150 FDCGKALL_00120 104875 3 Skin 0.01 protein_coding synonymous_variant LOW 774T>C Gly258Gly
M0105151 FDCGKALL_00120 104898 3 Skin 0.01 protein_coding missense_variant MODERATE 797G>A Arg266Gln
M0105152 FDCGKALL_00412 363982 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -2266A>G None
M0105153 FDCGKALL_00321 288612 4 Skin 0.01 protein_coding synonymous_variant LOW 2766G>C Val922Val
M0105154 FDCGKALL_00209 186626 6 Skin 0.02 protein_coding synonymous_variant LOW 1461T>C Arg487Arg
M0105155 FDCGKALL_00210 188258 5 Skin 0.02 protein_coding synonymous_variant LOW 243T>C Ile81Ile
M0105156 FDCGKALL_00121 105885 3 Skin 0.01 protein_coding synonymous_variant LOW 324A>T Ser108Ser
M0105157 FDCGKALL_00121 105891 3 Skin 0.01 protein_coding synonymous_variant LOW 330G>T Val110Val
M0105158 FDCGKALL_00121 105929 3 Skin 0.01 protein_coding missense_variant MODERATE 368A>C Glu123Ala
M0105159 FDCGKALL_00121 105930 3 Skin 0.01 protein_coding missense_variant MODERATE 369G>C Glu123Asp
M0105160 FDCGKALL_00121 105957 3 Skin 0.01 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0105161 FDCGKALL_00121 105966 3 Skin 0.01 protein_coding synonymous_variant LOW 405A>G Gly135Gly
M0105162 FDCGKALL_00134 118346 7 Skin 0.03 protein_coding synonymous_variant LOW 51A>G Glu17Glu
M0105163 FDCGKALL_00435 374642 6 Skin 0.02 protein_coding synonymous_variant LOW 510T>C Ile170Ile
M0105164 FDCGKALL_00427 375218 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4974C>T None
M0105165 FDCGKALL_00436 375838 7 Skin 0.03 protein_coding missense_variant MODERATE 214A>G Thr72Ala
M0105166 FDCGKALL_00432 376872 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4696C>T None
M0105167 FDCGKALL_00442 379579 6 Skin 0.02 protein_coding synonymous_variant LOW 24T>C Pro8Pro
M0105168 FDCGKALL_00442 379584 6 Skin 0.02 protein_coding missense_variant MODERATE 19A>C Thr7Pro
M0105169 FDCGKALL_00435 379603 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4452C>A None
M0105170 FDCGKALL_00443 379682 6 Skin 0.02 protein_coding synonymous_variant LOW 54C>T Phe18Phe
M0105171 FDCGKALL_00443 379705 5 Skin 0.02 protein_coding missense_variant MODERATE 77A>C Asp26Ala
M0105172 FDCGKALL_00443 379713 5 Skin 0.02 protein_coding missense_variant MODERATE 85G>A Asp29Asn
M0105173 FDCGKALL_00443 379728 5 Skin 0.02 protein_coding missense_variant MODERATE 100T>C Ser34Pro
M0105174 FDCGKALL_00443 379740 5 Skin 0.02 protein_coding missense_variant MODERATE 112G>C Ala38Pro
M0105175 FDCGKALL_00443 379742 5 Skin 0.02 protein_coding synonymous_variant LOW 114G>A Ala38Ala
M0105176 FDCGKALL_00444 379774 5 Skin 0.02 protein_coding synonymous_variant LOW 231T>A Ile77Ile
M0105177 FDCGKALL_00436 380490 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4439T>A None
M0105178 FDCGKALL_00436 380492 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4441A>C None
M0105179 FDCGKALL_00436 380497 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4446A>T None
M0105180 FDCGKALL_00436 380503 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4452G>A None
M0105181 FDCGKALL_00436 380506 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4455T>C None
M0105182 FDCGKALL_00436 380508 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4457G>C None
M0105183 FDCGKALL_00436 380509 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4458T>C None
M0105184 FDCGKALL_00436 380513 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4462T>C None
M0105185 FDCGKALL_00436 380514 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4463G>A None
M0105186 FDCGKALL_00436 380515 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4464T>G None
M0105187 FDCGKALL_00436 380518 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4467C>T None
M0105188 FDCGKALL_00436 380540 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4489C>T None
M0105189 FDCGKALL_00446 380572 5 Skin 0.02 protein_coding synonymous_variant LOW 294T>A Gly98Gly
M0105190 FDCGKALL_00446 380581 5 Skin 0.02 protein_coding synonymous_variant LOW 285A>G Gln95Gln
M0105191 FDCGKALL_00245 227970 6 Skin 0.02 protein_coding missense_variant MODERATE 158T>C Ile53Thr
M0105192 FDCGKALL_00245 227982 6 Skin 0.02 protein_coding missense_variant MODERATE 146A>C Asn49Thr
M0105193 FDCGKALL_00245 227998 6 Skin 0.02 protein_coding missense_variant MODERATE 130G>T Ala44Ser
M0105194 FDCGKALL_00245 228002 6 Skin 0.02 protein_coding synonymous_variant LOW 126C>G Ala42Ala
M0105195 FDCGKALL_00245 228008 6 Skin 0.02 protein_coding synonymous_variant LOW 120G>C Val40Val
M0105196 FDCGKALL_00245 228088 6 Skin 0.02 protein_coding missense_variant MODERATE 40G>A Ala14Thr
M0105197 FDCGKALL_00245 228096 6 Skin 0.02 protein_coding missense_variant MODERATE 32C>A Thr11Asn
M0105198 FDCGKALL_00246 228252 6 Skin 0.02 protein_coding synonymous_variant LOW 522T>C Asn174Asn
M0105199 FDCGKALL_00246 228317 6 Skin 0.02 protein_coding missense_variant MODERATE 457T>A Ser153Thr
M0105200 FDCGKALL_00246 228321 6 Skin 0.02 protein_coding synonymous_variant LOW 453A>T Gly151Gly
M0105201 FDCGKALL_00246 228345 6 Skin 0.02 protein_coding synonymous_variant LOW 429T>C Ile143Ile
M0105202 FDCGKALL_00246 228381 6 Skin 0.02 protein_coding synonymous_variant LOW 393C>T Asp131Asp
M0105203 FDCGKALL_00246 228399 6 Skin 0.02 protein_coding synonymous_variant LOW 375G>A Pro125Pro
M0105204 FDCGKALL_00246 228441 6 Skin 0.02 protein_coding synonymous_variant LOW 333G>A Pro111Pro
M0105205 FDCGKALL_00246 228444 6 Skin 0.02 protein_coding synonymous_variant LOW 330A>C Arg110Arg
M0105206 FDCGKALL_00246 228456 6 Skin 0.02 protein_coding synonymous_variant LOW 318G>A Ala106Ala
M0105207 FDCGKALL_00246 228537 5 Skin 0.02 protein_coding synonymous_variant LOW 237G>A Lys79Lys
M0105208 FDCGKALL_00246 228558 5 Skin 0.02 protein_coding synonymous_variant LOW 216T>C Gly72Gly
M0105209 FDCGKALL_00246 228591 5 Skin 0.02 protein_coding synonymous_variant LOW 183C>T Ser61Ser
M0105210 FDCGKALL_00246 228666 5 Skin 0.02 protein_coding synonymous_variant LOW 108G>A Glu36Glu
M0105211 FDCGKALL_00246 228672 5 Skin 0.02 protein_coding missense_variant MODERATE 102T>A Asp34Glu
M0105212 FDCGKALL_00247 228791 4 Skin 0.01 protein_coding synonymous_variant LOW 1182G>A Val394Val
M0105213 FDCGKALL_00247 228812 4 Skin 0.01 protein_coding synonymous_variant LOW 1161C>T Arg387Arg
M0105214 FDCGKALL_00247 228833 4 Skin 0.01 protein_coding synonymous_variant LOW 1140A>G Val380Val
M0105215 FDCGKALL_00247 228860 4 Skin 0.01 protein_coding missense_variant MODERATE 1113G>A Met371Ile
M0105216 FDCGKALL_00247 228863 4 Skin 0.01 protein_coding synonymous_variant LOW 1110C>T Tyr370Tyr
M0105217 FDCGKALL_00247 228884 4 Skin 0.01 protein_coding synonymous_variant LOW 1089G>A Ala363Ala
M0105218 FDCGKALL_00247 228932 4 Skin 0.01 protein_coding synonymous_variant LOW 1041A>T Thr347Thr
M0105219 FDCGKALL_00247 228934 4 Skin 0.01 protein_coding missense_variant MODERATE 1039A>G Thr347Ala
M0105220 FDCGKALL_00247 228956 4 Skin 0.01 protein_coding synonymous_variant LOW 1017C>T Thr339Thr
M0105221 FDCGKALL_00247 228962 4 Skin 0.01 protein_coding synonymous_variant LOW 1011C>T Ser337Ser
M0105222 FDCGKALL_00247 229007 4 Skin 0.01 protein_coding synonymous_variant LOW 966G>A Gln322Gln
M0105223 FDCGKALL_00247 229010 4 Skin 0.01 protein_coding synonymous_variant LOW 963A>G Ala321Ala
M0105224 FDCGKALL_00247 229036 4 Skin 0.01 protein_coding missense_variant MODERATE 937G>A Val313Ile
M0105225 FDCGKALL_00247 229055 4 Skin 0.01 protein_coding synonymous_variant LOW 918G>A Gln306Gln
M0105226 FDCGKALL_00247 229070 4 Skin 0.01 protein_coding synonymous_variant LOW 903G>T Val301Val
M0105227 FDCGKALL_00247 229076 4 Skin 0.01 protein_coding synonymous_variant LOW 897A>C Arg299Arg
M0105228 FDCGKALL_00247 229091 4 Skin 0.01 protein_coding synonymous_variant LOW 882C>T Val294Val
M0105229 FDCGKALL_00247 229118 4 Skin 0.01 protein_coding synonymous_variant LOW 855T>C Gly285Gly
M0105230 FDCGKALL_00247 229145 4 Skin 0.01 protein_coding synonymous_variant LOW 828A>C Gly276Gly
M0105231 FDCGKALL_00247 229163 4 Skin 0.01 protein_coding synonymous_variant LOW 810T>G Ser270Ser
M0105232 FDCGKALL_00393 347104 3 Skin 0.01 protein_coding missense_variant MODERATE 8C>T Pro3Leu
M0105233 FDCGKALL_00389 347141 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3269T>A None
M0105234 FDCGKALL_00389 347159 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3287G>A None
M0105235 FDCGKALL_00389 347178 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3306G>A None
M0105236 FDCGKALL_00389 347181 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3309C>T None
M0105237 FDCGKALL_00389 347212 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3340C>A None
M0105238 FDCGKALL_00389 347213 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3341A>G None
M0105239 FDCGKALL_00389 347247 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3375A>G None
M0105240 FDCGKALL_00116 100873 3 Skin 0.01 protein_coding synonymous_variant LOW 573T>C Ile191Ile
M0105241 FDCGKALL_00116 100879 3 Skin 0.01 protein_coding synonymous_variant LOW 579A>C Val193Val
M0105242 FDCGKALL_00116 100903 3 Skin 0.01 protein_coding synonymous_variant LOW 603A>G Lys201Lys
M0105243 FDCGKALL_00116 100906 3 Skin 0.01 protein_coding synonymous_variant LOW 606A>T Ile202Ile
M0105244 FDCGKALL_00092 79416 5 Skin 0.02 protein_coding missense_variant MODERATE 577C>T Pro193Ser
M0105245 FDCGKALL_00393 346053 3 Skin 0.01 protein_coding synonymous_variant LOW 1059C>G Arg353Arg
M0105246 FDCGKALL_00393 346056 3 Skin 0.01 protein_coding synonymous_variant LOW 1056A>G Leu352Leu
M0105247 FDCGKALL_00393 346071 3 Skin 0.01 protein_coding synonymous_variant LOW 1041A>G Arg347Arg
M0105248 FDCGKALL_00393 346083 3 Skin 0.01 protein_coding synonymous_variant LOW 1029C>T Arg343Arg
M0105249 FDCGKALL_00393 346091 3 Skin 0.01 protein_coding synonymous_variant LOW 1021C>T Leu341Leu
M0105250 FDCGKALL_00393 346374 3 Skin 0.01 protein_coding synonymous_variant LOW 738A>G Pro246Pro
M0105251 FDCGKALL_00393 346592 3 Skin 0.01 protein_coding missense_variant MODERATE 520C>A Leu174Met






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
FDCGKALL_00114 Copper (Cu), Silver (Ag) 75.5 2.2e-288 1 637 1.0000 1.0460 experiment
FDCGKALL_00116 Copper (Cu) 82.2 1.3e-105 1 225 1.0000 0.9912 experiment
FDCGKALL_00127 Arsenic (As), Antimony (Sb) 75.2 2.8e-178 1 427 1.0000 0.9953 experiment
FDCGKALL_00286 Mercury (Hg) 77.7 2.1e-58 1 139 1.0000 0.9653 experiment
FDCGKALL_00287 Mercury (Hg) 84.5 1.5e-54 1 116 1.0000 1.0000 experiment
FDCGKALL_00288 Mercury (Hg) 77.2 2e-33 1 92 1.0000 1.0110 experiment
FDCGKALL_00290 Mercury (Hg) 77.7 9.4e-243 1 560 1.0018 1.0000 experiment
FDCGKALL_00112 Copper (Cu) 100 5e-217 11 381 0.9738 1.0000 prediction
FDCGKALL_00114 Copper (Cu), Silver (Ag) 100 0 1 637 1.0000 1.0000 prediction
FDCGKALL_00116 Copper (Cu) 100 3e-124 1 225 1.0000 1.0000 prediction
FDCGKALL_00117 Copper (Cu) 100 1.2e-263 1 468 1.0000 1.0000 prediction
FDCGKALL_00127 Arsenic (As), Antimony (Sb) 75.2 6.8e-178 1 427 1.0000 0.9953 prediction
FDCGKALL_00129 Arsenic (As) 82.6 5.2e-111 2 237 0.9958 0.9916 prediction
FDCGKALL_00131 Arsenic (As) 96.9 1.9e-205 1 360 1.0000 1.0000 prediction
FDCGKALL_00207 Mercury (Hg) 96.7 9.7e-42 1 91 1.0000 1.0000 prediction
FDCGKALL_00286 Mercury (Hg) 100 3e-74 1 139 1.0000 1.0000 prediction
FDCGKALL_00287 Mercury (Hg) 100 1.3e-59 1 116 1.0000 1.0000 prediction
FDCGKALL_00288 Mercury (Hg) 100 9.8e-42 1 92 1.0000 1.0000 prediction
FDCGKALL_00290 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 100 2.19999999999959e-312 1 560 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
FDCGKALL_00142 PHI:3165 hopA1 82.6 4.2e-145 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
FDCGKALL_00219 PHI:3165 hopA1 82.6 4.2e-145 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
FDCGKALL_00334 PHI:9804 int 100 4e-14 1 37 0.1098 1.0000 rodents gastroenteritis integrase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FDCGKALL_00062 UFH30028.1|GH3 100 0 1 814 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FDCGKALL_00127 3.A.4.1.1 73.8 1.7e-174 1 427 1.0000 0.9953 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.4 The Arsenite-Antimonite (ArsAB) Efflux Family
FDCGKALL_00287 1.A.72.3.1 80.2 5e-49 1 116 1.0000 1.2747 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
FDCGKALL_00288 1.A.72.3.1 77.2 9.8e-32 1 92 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily