Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C987
  Reference Plasmid   NZ_CP090412.1
  Reference Plasmid Size   140826
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0191636 FINMPBAL_00130 123042 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -43C>T None
M0191637 FINMPBAL_00130 124821 5 Gut 0.07 protein_coding synonymous_variant LOW 1737G>A Ala579Ala
M0191638 FINMPBAL_00132 128142 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -963T>A None
M0191639 FINMPBAL_00134 128436 3 Gut 0.04 protein_coding synonymous_variant LOW 405T>C Asn135Asn
M0191640 FINMPBAL_00134 128447 3 Gut 0.04 protein_coding missense_variant MODERATE 394C>T Pro132Ser
M0191641 FINMPBAL_00100 91863 4 Gut 0.05 protein_coding synonymous_variant LOW 303T>C Tyr101Tyr
M0191642 FINMPBAL_00101 93300 3 Gut 0.04 protein_coding missense_variant MODERATE 436G>A Val146Ile
M0191643 FINMPBAL_00101 93508 4 Gut 0.05 protein_coding missense_variant MODERATE 228G>A Met76Ile
M0191644 FINMPBAL_00101 93830 4 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -95A>G None
M0191645 FINMPBAL_00093 79374 4 Gut 0.05 protein_coding synonymous_variant LOW 447T>C Ser149Ser
M0191646 FINMPBAL_00094 79896 4 Gut 0.05 protein_coding missense_variant MODERATE 248A>G Glu83Gly
M0191647 FINMPBAL_00096 81664 5 Gut 0.07 protein_coding missense_variant MODERATE 322A>G Lys108Glu
M0191648 FINMPBAL_00007 6837 7 Gut 0.09 protein_coding missense_variant MODERATE 415A>G Lys139Glu
M0191649 FINMPBAL_00093 78915 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -13G>A None
M0191650 FINMPBAL_00093 78923 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -5A>G None
M0191651 FINMPBAL_00093 78960 3 Gut 0.04 protein_coding synonymous_variant LOW 33T>A Pro11Pro
M0191652 FINMPBAL_00093 78994 3 Gut 0.04 protein_coding synonymous_variant LOW 67C>T Leu23Leu
M0191653 FINMPBAL_00093 79017 3 Gut 0.04 protein_coding synonymous_variant LOW 90C>T Ile30Ile
M0191654 FINMPBAL_00093 79047 3 Gut 0.04 protein_coding synonymous_variant LOW 120C>A Ile40Ile
M0191655 FINMPBAL_00093 79057 3 Gut 0.04 protein_coding missense_variant MODERATE 130G>A Glu44Lys
M0191656 FINMPBAL_00093 79059 3 Gut 0.04 protein_coding synonymous_variant LOW 132G>A Glu44Glu
M0191657 FINMPBAL_00093 79097 3 Gut 0.04 protein_coding missense_variant MODERATE 170G>A Gly57Glu
M0191658 FINMPBAL_00093 79111 3 Gut 0.04 protein_coding missense_variant MODERATE 184G>A Val62Ile
M0191659 FINMPBAL_00093 79154 3 Gut 0.04 protein_coding missense_variant MODERATE 227A>G Asp76Gly
M0191660 FINMPBAL_00093 79155 3 Gut 0.04 protein_coding synonymous_variant LOW 228C>T Asp76Asp
M0191661 FINMPBAL_00093 79160 3 Gut 0.04 protein_coding missense_variant MODERATE 233A>T Glu78Val
M0191662 FINMPBAL_00093 79242 3 Gut 0.04 protein_coding synonymous_variant LOW 315A>G Gly105Gly
M0191663 FINMPBAL_00093 79244 3 Gut 0.04 protein_coding missense_variant MODERATE 317A>G Asn106Ser
M0191664 FINMPBAL_00093 79267 3 Gut 0.04 protein_coding missense_variant MODERATE 340A>G Thr114Ala
M0191665 FINMPBAL_00093 79273 3 Gut 0.04 protein_coding missense_variant MODERATE 346A>C Asn116His
M0191666 FINMPBAL_00093 79278 3 Gut 0.04 protein_coding missense_variant MODERATE 351C>A His117Gln
M0191667 FINMPBAL_00093 79287 3 Gut 0.04 protein_coding synonymous_variant LOW 360C>T Phe120Phe
M0191668 FINMPBAL_00093 79302 3 Gut 0.04 protein_coding synonymous_variant LOW 375C>T Asp125Asp
M0191669 FINMPBAL_00093 79307 3 Gut 0.04 protein_coding missense_variant MODERATE 380G>A Ser127Asn
M0191670 FINMPBAL_00093 79317 3 Gut 0.04 protein_coding synonymous_variant LOW 390C>T Asn130Asn
M0191671 FINMPBAL_00093 79324 3 Gut 0.04 protein_coding missense_variant MODERATE 397G>A Asp133Asn
M0191672 FINMPBAL_00093 79332 3 Gut 0.04 protein_coding synonymous_variant LOW 405C>T Tyr135Tyr
M0191673 FINMPBAL_00093 79628 3 Gut 0.04 protein_coding missense_variant MODERATE 701G>C Gly234Ala
M0191674 FINMPBAL_00093 79742 3 Gut 0.04 protein_coding missense_variant MODERATE 815T>C Val272Ala
M0191675 FINMPBAL_00094 80026 3 Gut 0.04 protein_coding missense_variant MODERATE 118A>G Thr40Ala
M0191676 FINMPBAL_00094 80081 3 Gut 0.04 protein_coding synonymous_variant LOW 63C>T Asn21Asn
M0191677 FINMPBAL_00094 80128 3 Gut 0.04 protein_coding missense_variant MODERATE 16T>A Leu6Ile
M0191678 FINMPBAL_00094 80164 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -21C>T None
M0191679 FINMPBAL_00095 80326 3 Gut 0.04 protein_coding synonymous_variant LOW 675C>T Tyr225Tyr
M0191680 FINMPBAL_00095 80329 3 Gut 0.04 protein_coding synonymous_variant LOW 672T>C Ile224Ile
M0191681 FINMPBAL_00095 80335 3 Gut 0.04 protein_coding synonymous_variant LOW 666T>C Ser222Ser
M0191682 FINMPBAL_00095 80356 3 Gut 0.04 protein_coding synonymous_variant LOW 645C>T Ala215Ala
M0191683 FINMPBAL_00095 80725 3 Gut 0.04 protein_coding missense_variant MODERATE 276G>T Gln92His
M0191684 FINMPBAL_00094 81041 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -898G>A None
M0191685 FINMPBAL_00094 81077 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -934G>A None
M0191686 FINMPBAL_00094 81107 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -964T>C None
M0191687 FINMPBAL_00094 81108 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -965A>G None
M0191688 FINMPBAL_00094 81148 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1005T>C None
M0191689 FINMPBAL_00094 81153 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1010T>C None
M0191690 FINMPBAL_00094 81164 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1021C>T None
M0191691 FINMPBAL_00094 81188 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1045C>T None
M0191692 FINMPBAL_00094 81233 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1090A>C None
M0191693 FINMPBAL_00094 81254 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1111C>T None
M0191694 FINMPBAL_00094 81258 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1115C>T None
M0191695 FINMPBAL_00096 81456 3 Gut 0.04 protein_coding synonymous_variant LOW 114C>T Thr38Thr
M0191696 FINMPBAL_00096 81777 3 Gut 0.04 protein_coding synonymous_variant LOW 435G>A Thr145Thr
M0191697 FINMPBAL_00096 81849 3 Gut 0.04 protein_coding synonymous_variant LOW 507A>T Pro169Pro
M0191698 FINMPBAL_00096 81917 3 Gut 0.04 protein_coding missense_variant MODERATE 575G>A Gly192Asp
M0191699 FINMPBAL_00096 81969 3 Gut 0.04 protein_coding synonymous_variant LOW 627C>T His209His
M0191700 FINMPBAL_00096 81981 3 Gut 0.04 protein_coding synonymous_variant LOW 639G>A Leu213Leu
M0191701 FINMPBAL_00096 82002 3 Gut 0.04 protein_coding synonymous_variant LOW 660A>G Gly220Gly
M0191702 FINMPBAL_00096 82125 3 Gut 0.04 protein_coding synonymous_variant LOW 783A>G Leu261Leu
M0191703 FINMPBAL_00096 82128 3 Gut 0.04 protein_coding synonymous_variant LOW 786G>A Leu262Leu
M0191704 FINMPBAL_00096 82152 3 Gut 0.04 protein_coding synonymous_variant LOW 810C>T Asn270Asn
M0191705 FINMPBAL_00096 82158 3 Gut 0.04 protein_coding synonymous_variant LOW 816C>T Asn272Asn
M0191706 FINMPBAL_00096 82179 3 Gut 0.04 protein_coding synonymous_variant LOW 837G>A Gly279Gly
M0191707 FINMPBAL_00096 82248 3 Gut 0.04 protein_coding synonymous_variant LOW 906A>G Lys302Lys
M0191708 FINMPBAL_00096 82345 3 Gut 0.04 protein_coding missense_variant MODERATE 1003A>C Lys335Gln
M0191709 FINMPBAL_00096 82428 3 Gut 0.04 protein_coding synonymous_variant LOW 1086T>C Ser362Ser
M0191710 FINMPBAL_00096 82473 3 Gut 0.04 protein_coding synonymous_variant LOW 1131T>A Thr377Thr
M0191711 FINMPBAL_00096 82596 3 Gut 0.04 protein_coding synonymous_variant LOW 1254T>C Gly418Gly
M0191712 FINMPBAL_00096 82686 3 Gut 0.04 protein_coding synonymous_variant LOW 1344T>C Gly448Gly
M0191713 FINMPBAL_00096 82707 3 Gut 0.04 protein_coding synonymous_variant LOW 1365A>G Lys455Lys
M0191714 FINMPBAL_00096 82755 3 Gut 0.04 protein_coding missense_variant MODERATE 1413T>G Asn471Lys
M0191715 FINMPBAL_00096 82758 3 Gut 0.04 protein_coding synonymous_variant LOW 1416A>G Pro472Pro
M0191716 FINMPBAL_00096 82779 3 Gut 0.04 protein_coding synonymous_variant LOW 1437C>T Ala479Ala
M0191717 FINMPBAL_00096 82848 3 Gut 0.04 protein_coding synonymous_variant LOW 1506T>A Thr502Thr
M0191718 FINMPBAL_00096 82891 3 Gut 0.04 protein_coding missense_variant MODERATE 1549G>T Val517Leu
M0191719 FINMPBAL_00096 82963 3 Gut 0.04 protein_coding missense_variant MODERATE 1621A>G Thr541Ala
M0191720 FINMPBAL_00097 88670 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4555C>T None
M0191721 FINMPBAL_00097 88671 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4556A>C None
M0191722 FINMPBAL_00097 88723 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4608A>G None
M0191723 FINMPBAL_00099 88961 3 Gut 0.04 protein_coding missense_variant MODERATE 163A>G Ile55Val
M0191724 FINMPBAL_00099 89479 3 Gut 0.04 protein_coding synonymous_variant LOW 681C>T Tyr227Tyr
M0191725 FINMPBAL_00099 89785 3 Gut 0.04 protein_coding synonymous_variant LOW 987C>T Phe329Phe
M0191726 FINMPBAL_00099 89815 3 Gut 0.04 protein_coding synonymous_variant LOW 1017A>G Lys339Lys
M0191727 FINMPBAL_00099 89830 3 Gut 0.04 protein_coding synonymous_variant LOW 1032G>A Lys344Lys
M0191728 FINMPBAL_00099 89941 3 Gut 0.04 protein_coding synonymous_variant LOW 1143T>C Ile381Ile
M0191729 FINMPBAL_00099 89980 3 Gut 0.04 protein_coding synonymous_variant LOW 1182T>C Asp394Asp
M0191730 FINMPBAL_00099 90169 3 Gut 0.04 protein_coding synonymous_variant LOW 1371G>A Arg457Arg
M0191731 FINMPBAL_00099 90250 3 Gut 0.04 protein_coding synonymous_variant LOW 1452T>C Ile484Ile
M0191732 FINMPBAL_00099 90253 3 Gut 0.04 protein_coding synonymous_variant LOW 1455C>T Asn485Asn
M0191733 FINMPBAL_00099 90290 6 Gut 0.08 protein_coding missense_variant MODERATE 1492G>T Val498Phe
M0191734 FINMPBAL_00099 90346 3 Gut 0.04 protein_coding synonymous_variant LOW 1548A>G Lys516Lys
M0191735 FINMPBAL_00099 90348 3 Gut 0.04 protein_coding missense_variant MODERATE 1550T>C Ile517Thr
M0191736 FINMPBAL_00099 90350 3 Gut 0.04 protein_coding missense_variant MODERATE 1552T>G Ser518Ala
M0191737 FINMPBAL_00099 91373 3 Gut 0.04 protein_coding missense_variant MODERATE 2575A>G Ile859Val
M0191738 FINMPBAL_00102 94144 3 Gut 0.04 protein_coding missense_variant MODERATE 43G>A Val15Ile
M0191739 FINMPBAL_00103 95806 3 Gut 0.04 protein_coding missense_variant MODERATE 886G>T Asp296Tyr
M0191740 FINMPBAL_00104 97206 4 Gut 0.05 protein_coding synonymous_variant LOW 426T>C Asn142Asn
M0191741 FINMPBAL_00106 97902 3 Gut 0.04 protein_coding synonymous_variant LOW 54T>C Gly18Gly
M0191742 FINMPBAL_00106 98257 3 Gut 0.04 protein_coding missense_variant MODERATE 409G>A Glu137Lys
M0191743 FINMPBAL_00108 99515 3 Gut 0.04 protein_coding missense_variant MODERATE 158A>G Glu53Gly
M0191744 FINMPBAL_00108 99976 3 Gut 0.04 protein_coding missense_variant MODERATE 619A>G Met207Val
M0191745 FINMPBAL_00066 62142 5 Gut 0.07 protein_coding synonymous_variant LOW 135A>G Gly45Gly
M0191746 FINMPBAL_00133 127706 3 Gut 0.04 protein_coding missense_variant MODERATE 34G>A Asp12Asn
M0191747 FINMPBAL_00012 13770 4 Gut 0.05 protein_coding missense_variant MODERATE 100A>G Arg34Gly
M0191748 FINMPBAL_00008 7644 3 Gut 0.04 protein_coding synonymous_variant LOW 948A>C Ile316Ile
M0191749 FINMPBAL_00010 10785 3 Gut 0.04 protein_coding synonymous_variant LOW 585T>C Ser195Ser
M0191750 FINMPBAL_00008 11726 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -3135T>C None
M0191751 FINMPBAL_00062 58540 3 Gut 0.04 protein_coding synonymous_variant LOW 813G>A Lys271Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FINMPBAL_00042 UIP52493.1|GH1 100 0 1 474 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FINMPBAL_00067 2.A.21.3.20 74.5 5.1e-207 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family