Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C989
  Reference Plasmid   NZ_CP090916.1
  Reference Plasmid Size   53974
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0105378 ICLNDKLG_00001 459 5 Skin 0.11 protein_coding synonymous_variant LOW 459A>G Gly153Gly
M0105379 ICLNDKLG_00001 519 4 Skin 0.09 protein_coding synonymous_variant LOW 519C>T Ile173Ile
M0105380 ICLNDKLG_00001 534 5 Skin 0.11 protein_coding synonymous_variant LOW 534G>T Val178Val
M0105381 ICLNDKLG_00001 547 5 Skin 0.11 protein_coding synonymous_variant LOW 547C>T Leu183Leu
M0105382 ICLNDKLG_00001 570 5 Skin 0.11 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0105383 ICLNDKLG_00001 720 5 Skin 0.11 protein_coding synonymous_variant LOW 720C>T Asn240Asn
M0105384 ICLNDKLG_00001 748 5 Skin 0.11 protein_coding missense_variant MODERATE 748A>C Asn250His
M0105385 ICLNDKLG_00001 749 5 Skin 0.11 protein_coding missense_variant MODERATE 749A>C Asn250Thr
M0105386 ICLNDKLG_00001 835 5 Skin 0.11 protein_coding missense_variant MODERATE 835G>A Glu279Lys
M0105387 ICLNDKLG_00001 916 5 Skin 0.11 protein_coding missense_variant MODERATE 916G>A Val306Ile
M0105388 ICLNDKLG_00001 918 5 Skin 0.11 protein_coding synonymous_variant LOW 918T>G Val306Val
M0105389 ICLNDKLG_00002 2528 5 Skin 0.11 protein_coding missense_variant MODERATE 856G>A Val286Ile
M0105390 ICLNDKLG_00055 42171 3 Skin 0.07 protein_coding missense_variant MODERATE 1228T>G Phe410Val
M0105391 ICLNDKLG_00055 42729 3 Skin 0.07 protein_coding missense_variant MODERATE 670A>G Ile224Val
M0105392 ICLNDKLG_00023 26548 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4744T>G None
M0105393 ICLNDKLG_00023 26552 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4748T>C None
M0105394 ICLNDKLG_00031 26679 5 Skin 0.11 protein_coding synonymous_variant LOW 87T>C Ser29Ser
M0105395 ICLNDKLG_00031 26730 3 Skin 0.07 protein_coding synonymous_variant LOW 138T>C Phe46Phe
M0105396 ICLNDKLG_00031 26733 5 Skin 0.11 protein_coding synonymous_variant LOW 141G>A Thr47Thr
M0105397 ICLNDKLG_00031 26742 3 Skin 0.07 protein_coding synonymous_variant LOW 150C>T Phe50Phe
M0105398 ICLNDKLG_00031 26800 5 Skin 0.11 protein_coding synonymous_variant LOW 208C>T Leu70Leu
M0105399 ICLNDKLG_00031 26806 5 Skin 0.11 protein_coding missense_variant MODERATE 214C>A Leu72Ile
M0105400 ICLNDKLG_00031 26955 5 Skin 0.11 protein_coding missense_variant MODERATE 363C>A Asp121Glu
M0105401 ICLNDKLG_00031 27062 4 Skin 0.09 protein_coding missense_variant MODERATE 470T>C Phe157Ser
M0105402 ICLNDKLG_00031 27318 5 Skin 0.11 protein_coding synonymous_variant LOW 726G>C Gly242Gly
M0105403 ICLNDKLG_00031 27650 5 Skin 0.11 protein_coding missense_variant MODERATE 1058A>G Asn353Ser
M0105404 ICLNDKLG_00031 27707 6 Skin 0.13 protein_coding missense_variant MODERATE 1115C>T Ser372Leu
M0105405 ICLNDKLG_00025 27774 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4492A>T None
M0105406 ICLNDKLG_00025 27775 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4493A>T None
M0105407 ICLNDKLG_00025 27776 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4494A>T None
M0105408 ICLNDKLG_00001 36 3 Skin 0.07 protein_coding missense_variant MODERATE 36T>A Phe12Leu
M0105409 ICLNDKLG_00001 82 3 Skin 0.07 protein_coding synonymous_variant LOW 82T>C Leu28Leu
M0105410 ICLNDKLG_00001 94 3 Skin 0.07 protein_coding synonymous_variant LOW 94C>T Leu32Leu
M0105411 ICLNDKLG_00001 96 3 Skin 0.07 protein_coding synonymous_variant LOW 96G>A Leu32Leu
M0105412 ICLNDKLG_00001 105 3 Skin 0.07 protein_coding synonymous_variant LOW 105G>A Lys35Lys
M0105413 ICLNDKLG_00001 128 3 Skin 0.07 protein_coding missense_variant MODERATE 128C>A Ala43Glu
M0105414 ICLNDKLG_00001 130 3 Skin 0.07 protein_coding missense_variant MODERATE 130A>G Lys44Glu
M0105415 ICLNDKLG_00001 131 3 Skin 0.07 protein_coding missense_variant MODERATE 131A>C Lys44Thr
M0105416 ICLNDKLG_00001 132 3 Skin 0.07 protein_coding synonymous_variant LOW 132G>A Lys44Lys
M0105417 ICLNDKLG_00001 135 3 Skin 0.07 protein_coding synonymous_variant LOW 135A>G Gln45Gln
M0105418 ICLNDKLG_00001 194 4 Skin 0.09 protein_coding missense_variant MODERATE 194A>G Glu65Gly
M0105419 ICLNDKLG_00001 195 4 Skin 0.09 protein_coding synonymous_variant LOW 195G>A Glu65Glu
M0105420 ICLNDKLG_00001 330 4 Skin 0.09 protein_coding synonymous_variant LOW 330C>T Asp110Asp
M0105421 ICLNDKLG_00001 349 4 Skin 0.09 protein_coding missense_variant MODERATE 349G>A Asp117Asn
M0105422 ICLNDKLG_00001 370 4 Skin 0.09 protein_coding missense_variant MODERATE 370G>A Glu124Lys
M0105423 ICLNDKLG_00001 450 3 Skin 0.07 protein_coding synonymous_variant LOW 450T>G Gly150Gly
M0105424 ICLNDKLG_00002 2432 4 Skin 0.09 protein_coding missense_variant MODERATE 760A>G Lys254Glu
M0105425 ICLNDKLG_00002 2794 4 Skin 0.09 protein_coding synonymous_variant LOW 1122G>A Thr374Thr
M0105426 ICLNDKLG_00003 3028 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -458G>A None
M0105427 ICLNDKLG_00003 3034 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -452A>T None
M0105428 ICLNDKLG_00067 52441 4 Skin 0.09 protein_coding stop_lost&splice_region_variant HIGH 157T>C Ter53Glnext*?
M0105429 ICLNDKLG_00067 52505 4 Skin 0.09 protein_coding synonymous_variant LOW 93G>A Gly31Gly
M0105430 ICLNDKLG_00067 52552 4 Skin 0.09 protein_coding missense_variant MODERATE 46T>G Ser16Ala
M0105431 ICLNDKLG_00063 52600 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3637C>T None
M0105432 ICLNDKLG_00063 52622 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3659A>C None
M0105433 ICLNDKLG_00063 52658 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3695C>T None
M0105434 ICLNDKLG_00063 52695 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3732A>G None
M0105435 ICLNDKLG_00063 52709 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3746A>C None
M0105436 ICLNDKLG_00063 52731 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3768G>T None
M0105437 ICLNDKLG_00063 52739 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3776T>G None
M0105438 ICLNDKLG_00063 52740 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3777G>T None
M0105439 ICLNDKLG_00063 52741 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3778T>C None
M0105440 ICLNDKLG_00063 52742 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3779T>A None
M0105441 ICLNDKLG_00063 52746 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3783A>T None
M0105442 ICLNDKLG_00063 52772 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3809T>C None
M0105443 ICLNDKLG_00063 52773 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3810T>C None
M0105444 ICLNDKLG_00063 52829 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3866T>C None
M0105445 ICLNDKLG_00063 52830 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3867G>A None
M0105446 ICLNDKLG_00063 52852 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3889C>T None
M0105447 ICLNDKLG_00063 52854 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3891C>T None
M0105448 ICLNDKLG_00063 52855 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3892T>C None
M0105449 ICLNDKLG_00063 52870 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3907T>C None
M0105450 ICLNDKLG_00063 52899 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3936C>T None
M0105451 ICLNDKLG_00063 52937 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3974T>C None
M0105452 ICLNDKLG_00063 52966 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4003G>A None
M0105453 ICLNDKLG_00068 52986 5 Skin 0.11 protein_coding synonymous_variant LOW 888A>G Lys296Lys
M0105454 ICLNDKLG_00068 53003 3 Skin 0.07 protein_coding missense_variant MODERATE 871T>G Tyr291Asp
M0105455 ICLNDKLG_00068 53010 3 Skin 0.07 protein_coding synonymous_variant LOW 864G>A Val288Val
M0105456 ICLNDKLG_00068 53014 3 Skin 0.07 protein_coding missense_variant MODERATE 860A>G Glu287Gly
M0105457 ICLNDKLG_00068 53042 3 Skin 0.07 protein_coding missense_variant MODERATE 832G>A Asp278Asn
M0105458 ICLNDKLG_00068 53050 3 Skin 0.07 protein_coding missense_variant MODERATE 824C>T Thr275Ile
M0105459 ICLNDKLG_00068 53051 3 Skin 0.07 protein_coding missense_variant MODERATE 823A>G Thr275Ala
M0105460 ICLNDKLG_00068 53080 3 Skin 0.07 protein_coding missense_variant MODERATE 794T>A Leu265His
M0105461 ICLNDKLG_00068 53120 3 Skin 0.07 protein_coding missense_variant MODERATE 754C>G His252Asp
M0105462 ICLNDKLG_00068 53151 3 Skin 0.07 protein_coding synonymous_variant LOW 723T>C Ile241Ile
M0105463 ICLNDKLG_00068 53157 3 Skin 0.07 protein_coding synonymous_variant LOW 717C>T Ile239Ile
M0105464 ICLNDKLG_00068 53169 3 Skin 0.07 protein_coding synonymous_variant LOW 705G>A Glu235Glu
M0105465 ICLNDKLG_00068 53221 4 Skin 0.09 protein_coding missense_variant MODERATE 653G>A Ser218Asn
M0105466 ICLNDKLG_00068 53229 5 Skin 0.11 protein_coding synonymous_variant LOW 645T>C Tyr215Tyr
M0105467 ICLNDKLG_00068 53232 4 Skin 0.09 protein_coding synonymous_variant LOW 642C>T His214His
M0105468 ICLNDKLG_00068 53247 4 Skin 0.09 protein_coding synonymous_variant LOW 627G>A Leu209Leu
M0105469 ICLNDKLG_00068 53250 4 Skin 0.09 protein_coding missense_variant MODERATE 624A>T Gln208His
M0105470 ICLNDKLG_00068 53253 3 Skin 0.07 protein_coding missense_variant MODERATE 621T>A Ser207Arg
M0105471 ICLNDKLG_00068 53268 4 Skin 0.09 protein_coding synonymous_variant LOW 606C>T His202His
M0105472 ICLNDKLG_00068 53271 3 Skin 0.07 protein_coding synonymous_variant LOW 603A>T Thr201Thr
M0105473 ICLNDKLG_00068 53298 3 Skin 0.07 protein_coding synonymous_variant LOW 576T>A Arg192Arg
M0105474 ICLNDKLG_00068 53299 3 Skin 0.07 protein_coding missense_variant MODERATE 575G>A Arg192His
M0105475 ICLNDKLG_00068 53352 3 Skin 0.07 protein_coding synonymous_variant LOW 522C>T Asn174Asn
M0105476 ICLNDKLG_00068 53369 4 Skin 0.09 protein_coding missense_variant MODERATE 505G>A Val169Ile
M0105477 ICLNDKLG_00068 53393 3 Skin 0.07 protein_coding missense_variant MODERATE 481G>A Val161Ile
M0105478 ICLNDKLG_00068 53445 4 Skin 0.09 protein_coding synonymous_variant LOW 429C>T Ile143Ile
M0105479 ICLNDKLG_00068 53457 3 Skin 0.07 protein_coding synonymous_variant LOW 417C>T Gly139Gly
M0105480 ICLNDKLG_00068 53463 3 Skin 0.07 protein_coding missense_variant MODERATE 411C>A Asn137Lys
M0105481 ICLNDKLG_00068 53481 3 Skin 0.07 protein_coding synonymous_variant LOW 393T>C Asp131Asp
M0105482 ICLNDKLG_00068 53493 3 Skin 0.07 protein_coding synonymous_variant LOW 381A>G Lys127Lys
M0105483 ICLNDKLG_00068 53504 3 Skin 0.07 protein_coding missense_variant MODERATE 370A>G Ile124Val
M0105484 ICLNDKLG_00068 53700 3 Skin 0.07 protein_coding synonymous_variant LOW 174C>T Ile58Ile
M0105485 ICLNDKLG_00068 53706 3 Skin 0.07 protein_coding synonymous_variant LOW 168T>C His56His
M0105486 ICLNDKLG_00068 53711 3 Skin 0.07 protein_coding missense_variant MODERATE 163A>C Asn55His
M0105487 ICLNDKLG_00068 53716 3 Skin 0.07 protein_coding missense_variant MODERATE 158A>C His53Pro
M0105488 ICLNDKLG_00068 53718 3 Skin 0.07 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0105489 ICLNDKLG_00068 53732 3 Skin 0.07 protein_coding missense_variant MODERATE 142A>G Ile48Val
M0105490 ICLNDKLG_00068 53803 3 Skin 0.07 protein_coding missense_variant MODERATE 71A>G Asn24Ser
M0105491 ICLNDKLG_00063 53884 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4921G>C None
M0105492 ICLNDKLG_00038 34038 3 Skin 0.07 protein_coding missense_variant MODERATE 206G>A Cys69Tyr
M0105493 ICLNDKLG_00038 34047 3 Skin 0.07 protein_coding missense_variant MODERATE 197G>A Arg66Lys
M0105494 ICLNDKLG_00037 34915 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1781G>A None
M0105495 ICLNDKLG_00037 34948 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1814T>C None
M0105496 ICLNDKLG_00025 27909 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4627A>G None
M0105497 ICLNDKLG_00025 27920 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4638C>A None
M0105498 ICLNDKLG_00025 27983 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4701T>C None
M0105499 ICLNDKLG_00025 28133 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4851G>C None
M0105500 ICLNDKLG_00037 37688 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4554T>A None
M0105501 ICLNDKLG_00037 37689 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4555T>A None
M0105502 ICLNDKLG_00037 37938 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4804A>G None
M0105503 ICLNDKLG_00045 37962 3 Skin 0.07 protein_coding missense_variant MODERATE 22C>A Gln8Lys
M0105504 ICLNDKLG_00046 38195 5 Skin 0.11 protein_coding synonymous_variant LOW 357G>A Glu119Glu
M0105505 ICLNDKLG_00046 38212 6 Skin 0.13 protein_coding missense_variant MODERATE 340G>A Asp114Asn
M0105506 ICLNDKLG_00046 38258 6 Skin 0.13 protein_coding synonymous_variant LOW 294G>T Ala98Ala
M0105507 ICLNDKLG_00046 38279 6 Skin 0.13 protein_coding synonymous_variant LOW 273C>T Gly91Gly
M0105508 ICLNDKLG_00046 38282 5 Skin 0.11 protein_coding synonymous_variant LOW 270A>G Gln90Gln
M0105509 ICLNDKLG_00046 38294 6 Skin 0.13 protein_coding synonymous_variant LOW 258A>T Thr86Thr
M0105510 ICLNDKLG_00046 38319 5 Skin 0.11 protein_coding missense_variant MODERATE 233T>A Phe78Tyr
M0105511 ICLNDKLG_00046 38320 5 Skin 0.11 protein_coding missense_variant MODERATE 232T>C Phe78Leu
M0105512 ICLNDKLG_00046 38347 5 Skin 0.11 protein_coding synonymous_variant LOW 205C>T Leu69Leu
M0105513 ICLNDKLG_00046 38354 5 Skin 0.11 protein_coding synonymous_variant LOW 198C>T Leu66Leu
M0105514 ICLNDKLG_00046 38363 5 Skin 0.11 protein_coding synonymous_variant LOW 189T>C Asp63Asp
M0105515 ICLNDKLG_00046 38374 5 Skin 0.11 protein_coding missense_variant MODERATE 178T>A Ser60Thr
M0105516 ICLNDKLG_00046 38386 5 Skin 0.11 protein_coding missense_variant MODERATE 166G>A Ala56Thr
M0105517 ICLNDKLG_00046 38438 5 Skin 0.11 protein_coding synonymous_variant LOW 114A>G Thr38Thr
M0105518 ICLNDKLG_00046 38452 3 Skin 0.07 protein_coding missense_variant MODERATE 100C>A Leu34Ile
M0105519 ICLNDKLG_00038 38581 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4338C>A None
M0105520 ICLNDKLG_00038 38584 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4341A>T None
M0105521 ICLNDKLG_00038 38589 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4346A>C None
M0105522 ICLNDKLG_00038 38595 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4352T>C None
M0105523 ICLNDKLG_00038 38599 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4356T>C None
M0105524 ICLNDKLG_00038 38679 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4436C>A None
M0105525 ICLNDKLG_00038 38709 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4466C>A None
M0105526 ICLNDKLG_00047 38775 8 Skin 0.17 protein_coding synonymous_variant LOW 60C>G Val20Val
M0105527 ICLNDKLG_00047 38948 8 Skin 0.17 protein_coding missense_variant MODERATE 233G>A Gly78Asp
M0105528 ICLNDKLG_00048 39122 8 Skin 0.17 protein_coding synonymous_variant LOW 150T>C His50His
M0105529 ICLNDKLG_00050 39576 4 Skin 0.09 protein_coding missense_variant MODERATE 72T>A Phe24Leu
M0105530 ICLNDKLG_00051 39835 3 Skin 0.07 protein_coding missense_variant MODERATE 103T>G Ser35Ala
M0105531 ICLNDKLG_00028 24944 3 Skin 0.07 protein_coding missense_variant MODERATE 61A>G Arg21Gly
M0105532 ICLNDKLG_00028 25189 3 Skin 0.07 protein_coding stop_lost&splice_region_variant HIGH 306A>C Ter102Tyrext*?
M0105533 ICLNDKLG_00058 44926 3 Skin 0.07 protein_coding synonymous_variant LOW 504C>T Val168Val
M0105534 ICLNDKLG_00058 44992 3 Skin 0.07 protein_coding synonymous_variant LOW 438A>C Pro146Pro
M0105535 ICLNDKLG_00058 45046 4 Skin 0.09 protein_coding synonymous_variant LOW 384T>C Asp128Asp
M0105536 ICLNDKLG_00058 45142 4 Skin 0.09 protein_coding synonymous_variant LOW 288T>C Asn96Asn
M0105537 ICLNDKLG_00055 45509 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2111G>A None
M0105538 ICLNDKLG_00055 45542 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2144A>C None
M0105539 ICLNDKLG_00055 45560 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2162G>A None
M0105540 ICLNDKLG_00055 45562 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2164A>T None
M0105541 ICLNDKLG_00055 45564 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2166T>C None
M0105542 ICLNDKLG_00055 45579 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2181T>C None
M0105543 ICLNDKLG_00055 45592 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2194T>G None
M0105544 ICLNDKLG_00055 45694 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2296C>A None
M0105545 ICLNDKLG_00055 45733 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2335C>A None
M0105546 ICLNDKLG_00055 45801 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2403G>A None
M0105547 ICLNDKLG_00055 45850 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2452G>A None
M0105548 ICLNDKLG_00055 45902 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2504A>G None
M0105549 ICLNDKLG_00059 45979 3 Skin 0.07 protein_coding missense_variant MODERATE 4T>C Ser2Pro
M0105550 ICLNDKLG_00048 38996 3 Skin 0.07 protein_coding synonymous_variant LOW 24A>T Ile8Ile
M0105551 ICLNDKLG_00048 39020 5 Skin 0.11 protein_coding synonymous_variant LOW 48G>A Leu16Leu
M0105552 ICLNDKLG_00039 39430 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4792C>T None
M0105553 ICLNDKLG_00039 39460 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4822A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term