Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C992
  Reference Plasmid   NZ_CP090942.1
  Reference Plasmid Size   64388
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0105588 AACFNLFA_00028 30018 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3513C>A None
M0105589 AACFNLFA_00035 30204 3 Skin 0.03 protein_coding missense_variant MODERATE 154A>G Asn52Asp
M0105590 AACFNLFA_00035 30216 3 Skin 0.03 protein_coding missense_variant MODERATE 166G>A Ala56Thr
M0105591 AACFNLFA_00035 30228 3 Skin 0.03 protein_coding missense_variant MODERATE 178T>A Ser60Thr
M0105592 AACFNLFA_00035 30239 3 Skin 0.03 protein_coding synonymous_variant LOW 189T>C Asp63Asp
M0105593 AACFNLFA_00035 30240 4 Skin 0.04 protein_coding missense_variant MODERATE 190A>G Asn64Asp
M0105594 AACFNLFA_00035 30248 3 Skin 0.03 protein_coding synonymous_variant LOW 198C>T Leu66Leu
M0105595 AACFNLFA_00035 30255 3 Skin 0.03 protein_coding synonymous_variant LOW 205C>T Leu69Leu
M0105596 AACFNLFA_00035 30282 3 Skin 0.03 protein_coding missense_variant MODERATE 232T>C Phe78Leu
M0105597 AACFNLFA_00035 30283 3 Skin 0.03 protein_coding missense_variant MODERATE 233T>A Phe78Tyr
M0105598 AACFNLFA_00035 30307 4 Skin 0.04 protein_coding missense_variant MODERATE 257A>C Asn86Thr
M0105599 AACFNLFA_00035 30320 3 Skin 0.03 protein_coding synonymous_variant LOW 270A>G Gln90Gln
M0105600 AACFNLFA_00052 45232 4 Skin 0.04 protein_coding missense_variant MODERATE 433G>A Val145Ile
M0105601 AACFNLFA_00052 45315 4 Skin 0.04 protein_coding synonymous_variant LOW 516C>A Pro172Pro
M0105602 AACFNLFA_00052 45318 4 Skin 0.04 protein_coding synonymous_variant LOW 519T>C Phe173Phe
M0105603 AACFNLFA_00052 45330 4 Skin 0.04 protein_coding synonymous_variant LOW 531A>T Gly177Gly
M0105604 AACFNLFA_00052 45343 4 Skin 0.04 protein_coding missense_variant MODERATE 544A>T Ile182Leu
M0105605 AACFNLFA_00052 45354 4 Skin 0.04 protein_coding synonymous_variant LOW 555A>G Lys185Lys
M0105606 AACFNLFA_00052 45371 4 Skin 0.04 protein_coding missense_variant MODERATE 572A>C Gln191Pro
M0105607 AACFNLFA_00052 45375 4 Skin 0.04 protein_coding missense_variant MODERATE 576T>A Asn192Lys
M0105608 AACFNLFA_00052 45984 3 Skin 0.03 protein_coding synonymous_variant LOW 1185T>A Ala395Ala
M0105609 AACFNLFA_00052 45993 3 Skin 0.03 protein_coding synonymous_variant LOW 1194A>G Arg398Arg
M0105610 AACFNLFA_00052 45999 3 Skin 0.03 protein_coding synonymous_variant LOW 1200C>T Val400Val
M0105611 AACFNLFA_00052 46027 3 Skin 0.03 protein_coding missense_variant MODERATE 1228G>A Ala410Thr
M0105612 AACFNLFA_00052 46039 3 Skin 0.03 protein_coding synonymous_variant LOW 1240C>T Leu414Leu
M0105613 AACFNLFA_00052 46063 3 Skin 0.03 protein_coding missense_variant MODERATE 1264A>T Thr422Ser
M0105614 AACFNLFA_00052 46066 3 Skin 0.03 protein_coding missense_variant MODERATE 1267A>G Asn423Asp
M0105615 AACFNLFA_00052 46083 3 Skin 0.03 protein_coding synonymous_variant LOW 1284T>C Gly428Gly
M0105616 AACFNLFA_00052 46089 3 Skin 0.03 protein_coding synonymous_variant LOW 1290C>T Ser430Ser
M0105617 AACFNLFA_00052 46157 3 Skin 0.03 protein_coding missense_variant MODERATE 1358A>G His453Arg
M0105618 AACFNLFA_00052 46159 3 Skin 0.03 protein_coding missense_variant MODERATE 1360C>A His454Asn
M0105619 AACFNLFA_00052 46172 3 Skin 0.03 protein_coding missense_variant MODERATE 1373C>T Ala458Val
M0105620 AACFNLFA_00050 46200 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2658A>G None
M0105621 AACFNLFA_00050 46202 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2660G>A None
M0105622 AACFNLFA_00050 46205 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2663A>T None
M0105623 AACFNLFA_00050 46206 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2664A>T None
M0105624 AACFNLFA_00050 46209 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2667C>T None
M0105625 AACFNLFA_00050 46211 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2669T>C None
M0105626 AACFNLFA_00050 46238 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2696A>G None
M0105627 AACFNLFA_00050 46261 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2719C>T None
M0105628 AACFNLFA_00050 46265 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2723T>C None
M0105629 AACFNLFA_00053 46378 4 Skin 0.04 protein_coding stop_lost&splice_region_variant HIGH 253T>C Ter85Glnext*?
M0105630 AACFNLFA_00050 46925 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3383A>G None
M0105631 AACFNLFA_00054 47258 4 Skin 0.04 protein_coding missense_variant MODERATE 301C>A His101Asn
M0105632 AACFNLFA_00050 47540 7 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3998T>C None
M0105633 AACFNLFA_00050 47549 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4007T>C None
M0105634 AACFNLFA_00028 31387 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4882G>C None
M0105635 AACFNLFA_00041 35647 3 Skin 0.03 protein_coding synonymous_variant LOW 687G>A Leu229Leu
M0105636 AACFNLFA_00041 35659 3 Skin 0.03 protein_coding synonymous_variant LOW 675T>C Tyr225Tyr
M0105637 AACFNLFA_00041 35734 3 Skin 0.03 protein_coding synonymous_variant LOW 600G>C Gly200Gly
M0105638 AACFNLFA_00041 36214 4 Skin 0.04 protein_coding synonymous_variant LOW 120A>G Thr40Thr
M0105639 AACFNLFA_00042 36745 4 Skin 0.04 protein_coding synonymous_variant LOW 72A>G Ala24Ala
M0105640 AACFNLFA_00042 36759 4 Skin 0.04 protein_coding missense_variant MODERATE 58G>A Val20Met
M0105641 AACFNLFA_00042 36794 4 Skin 0.04 protein_coding missense_variant MODERATE 23G>A Ser8Asn
M0105642 AACFNLFA_00042 36805 4 Skin 0.04 protein_coding synonymous_variant LOW 12T>C Tyr4Tyr
M0105643 AACFNLFA_00041 36847 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -514C>G None
M0105644 AACFNLFA_00041 36868 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -535T>G None
M0105645 AACFNLFA_00041 36912 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -579C>T None
M0105646 AACFNLFA_00041 36914 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -581C>T None
M0105647 AACFNLFA_00041 36916 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -583T>C None
M0105648 AACFNLFA_00041 36942 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -609A>G None
M0105649 AACFNLFA_00041 36953 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -620G>A None
M0105650 AACFNLFA_00041 36969 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -636G>T None
M0105651 AACFNLFA_00041 37022 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -689A>G None
M0105652 AACFNLFA_00020 20390 4 Skin 0.04 protein_coding synonymous_variant LOW 315A>G Lys105Lys
M0105653 AACFNLFA_00020 20400 4 Skin 0.04 protein_coding missense_variant MODERATE 305A>G Gln102Arg
M0105654 AACFNLFA_00020 20486 7 Skin 0.07 protein_coding synonymous_variant LOW 219G>A Leu73Leu
M0105655 AACFNLFA_00020 20642 5 Skin 0.05 protein_coding synonymous_variant LOW 63G>A Leu21Leu
M0105656 AACFNLFA_00020 20644 7 Skin 0.07 protein_coding synonymous_variant LOW 61C>T Leu21Leu
M0105657 AACFNLFA_00020 20653 3 Skin 0.03 protein_coding missense_variant MODERATE 52C>A His18Asn
M0105658 AACFNLFA_00020 20684 3 Skin 0.03 protein_coding synonymous_variant LOW 21A>G Lys7Lys
M0105659 AACFNLFA_00015 20752 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4678G>A None
M0105660 AACFNLFA_00015 20780 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4706T>G None
M0105661 AACFNLFA_00015 20799 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4725C>T None
M0105662 AACFNLFA_00021 21024 6 Skin 0.06 protein_coding missense_variant MODERATE 25A>G Ile9Val
M0105663 AACFNLFA_00021 21092 3 Skin 0.03 protein_coding synonymous_variant LOW 93C>A Ile31Ile
M0105664 AACFNLFA_00021 21239 3 Skin 0.03 protein_coding synonymous_variant LOW 240C>T Asp80Asp
M0105665 AACFNLFA_00015 15992 8 Skin 0.08 protein_coding missense_variant MODERATE 83C>T Ser28Phe
M0105666 AACFNLFA_00014 16146 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1044G>A None
M0105667 AACFNLFA_00014 16333 7 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1231T>C None
M0105668 AACFNLFA_00016 16498 3 Skin 0.03 protein_coding missense_variant MODERATE 119G>A Ser40Asn
M0105669 AACFNLFA_00014 17055 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1953A>G None
M0105670 AACFNLFA_00014 17785 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2683G>A None
M0105671 AACFNLFA_00014 17845 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2743A>G None
M0105672 AACFNLFA_00014 17870 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2768A>C None
M0105673 AACFNLFA_00017 17940 3 Skin 0.03 protein_coding missense_variant MODERATE 62C>T Thr21Ile
M0105674 AACFNLFA_00014 18215 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3113T>C None
M0105675 AACFNLFA_00014 18291 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3189T>C None
M0105676 AACFNLFA_00014 18389 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3287G>A None
M0105677 AACFNLFA_00014 18459 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3357G>A None
M0105678 AACFNLFA_00014 18597 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3495G>A None
M0105679 AACFNLFA_00014 18853 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3751A>G None
M0105680 AACFNLFA_00014 18858 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3756C>T None
M0105681 AACFNLFA_00032 34246 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4898T>C None
M0105682 AACFNLFA_00034 34724 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4836T>C None
M0105683 AACFNLFA_00034 34761 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4873A>G None
M0105684 AACFNLFA_00028 27434 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -929T>C None
M0105685 AACFNLFA_00028 27491 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -986C>T None
M0105686 AACFNLFA_00028 27580 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1075G>A None
M0105687 AACFNLFA_00028 27625 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1120A>C None
M0105688 AACFNLFA_00040 33648 4 Skin 0.04 protein_coding splice_region_variant&stop_retained_variant LOW 822G>A Ter274Ter
M0105689 AACFNLFA_00031 33754 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4937C>T None
M0105690 AACFNLFA_00049 43293 3 Skin 0.03 protein_coding synonymous_variant LOW 603C>T Asn201Asn
M0105691 AACFNLFA_00050 43534 5 Skin 0.05 protein_coding synonymous_variant LOW 9T>C Thr3Thr
M0105692 AACFNLFA_00044 43605 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4973C>T None
M0105693 AACFNLFA_00051 43709 5 Skin 0.05 protein_coding synonymous_variant LOW 66A>C Ile22Ile
M0105694 AACFNLFA_00051 44069 4 Skin 0.04 protein_coding synonymous_variant LOW 426T>C Phe142Phe
M0105695 AACFNLFA_00051 44159 3 Skin 0.03 protein_coding synonymous_variant LOW 516G>A Lys172Lys
M0105696 AACFNLFA_00051 44174 4 Skin 0.04 protein_coding missense_variant MODERATE 531C>A Asn177Lys
M0105697 AACFNLFA_00051 44176 4 Skin 0.04 protein_coding missense_variant MODERATE 533A>G Lys178Arg
M0105698 AACFNLFA_00051 44549 3 Skin 0.03 protein_coding synonymous_variant LOW 906C>T Asp302Asp
M0105699 AACFNLFA_00051 44633 4 Skin 0.04 protein_coding missense_variant MODERATE 990C>G Ile330Met
M0105700 AACFNLFA_00046 44670 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4067G>A None
M0105701 AACFNLFA_00046 44698 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4095T>C None
M0105702 AACFNLFA_00046 44699 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4096G>A None
M0105703 AACFNLFA_00046 44707 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4104C>T None
M0105704 AACFNLFA_00046 44711 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4108T>C None
M0105705 AACFNLFA_00046 44712 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4109G>T None
M0105706 AACFNLFA_00046 44715 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4112C>T None
M0105707 AACFNLFA_00046 44717 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4114A>G None
M0105708 AACFNLFA_00046 44750 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4147A>G None
M0105709 AACFNLFA_00046 44753 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4150A>G None
M0105710 AACFNLFA_00046 44754 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4151A>G None
M0105711 AACFNLFA_00046 44786 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4183T>G None
M0105712 AACFNLFA_00052 44818 5 Skin 0.05 protein_coding missense_variant MODERATE 19A>T Ile7Phe
M0105713 AACFNLFA_00052 44979 3 Skin 0.03 protein_coding synonymous_variant LOW 180G>T Gly60Gly
M0105714 AACFNLFA_00052 45086 3 Skin 0.03 protein_coding missense_variant MODERATE 287A>G Asn96Ser
M0105715 AACFNLFA_00052 45093 3 Skin 0.03 protein_coding synonymous_variant LOW 294A>G Val98Val
M0105716 AACFNLFA_00052 45223 3 Skin 0.03 protein_coding synonymous_variant LOW 424T>C Leu142Leu
M0105717 AACFNLFA_00052 45258 3 Skin 0.03 protein_coding synonymous_variant LOW 459T>C Ile153Ile
M0105718 AACFNLFA_00052 45261 3 Skin 0.03 protein_coding synonymous_variant LOW 462A>G Gly154Gly
M0105719 AACFNLFA_00052 45264 3 Skin 0.03 protein_coding synonymous_variant LOW 465C>A Gly155Gly
M0105720 AACFNLFA_00056 48651 3 Skin 0.03 protein_coding missense_variant MODERATE 103G>T Gly35Cys
M0105721 AACFNLFA_00018 19258 4 Skin 0.04 protein_coding synonymous_variant LOW 214T>C Leu72Leu
M0105722 AACFNLFA_00020 20191 3 Skin 0.03 protein_coding missense_variant MODERATE 514T>G Tyr172Asp
M0105723 AACFNLFA_00020 20573 3 Skin 0.03 protein_coding synonymous_variant LOW 132G>A Arg44Arg
M0105724 AACFNLFA_00015 20811 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4737C>T None
M0105725 AACFNLFA_00015 20812 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4738T>C None
M0105726 AACFNLFA_00015 20849 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4775G>T None
M0105727 AACFNLFA_00015 20882 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4808C>A None
M0105728 AACFNLFA_00015 20991 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4917C>T None
M0105729 AACFNLFA_00021 21055 3 Skin 0.03 protein_coding missense_variant MODERATE 56C>T Ala19Val
M0105730 AACFNLFA_00021 21647 5 Skin 0.05 protein_coding synonymous_variant LOW 648C>A Thr216Thr
M0105731 AACFNLFA_00028 29160 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2655C>A None
M0105732 AACFNLFA_00032 29282 5 Skin 0.05 protein_coding missense_variant MODERATE 67G>A Ala23Thr
M0105733 AACFNLFA_00033 29366 4 Skin 0.04 protein_coding splice_region_variant&stop_retained_variant LOW 266A>G Ter89Ter
M0105734 AACFNLFA_00033 29385 5 Skin 0.05 protein_coding missense_variant MODERATE 247A>G Thr83Ala
M0105735 AACFNLFA_00021 21821 3 Skin 0.03 protein_coding synonymous_variant LOW 822G>A Lys274Lys
M0105736 AACFNLFA_00041 39269 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2936G>C None
M0105737 AACFNLFA_00046 39573 4 Skin 0.04 protein_coding missense_variant MODERATE 1031A>T Asn344Ile
M0105738 AACFNLFA_00028 26350 3 Skin 0.03 protein_coding synonymous_variant LOW 156A>G Val52Val
M0105739 AACFNLFA_00028 26412 4 Skin 0.04 protein_coding missense_variant MODERATE 94T>C Phe32Leu
M0105740 AACFNLFA_00028 26413 4 Skin 0.04 protein_coding missense_variant MODERATE 93G>A Met31Ile
M0105741 AACFNLFA_00028 26471 4 Skin 0.04 protein_coding missense_variant MODERATE 35T>C Val12Ala
M0105742 AACFNLFA_00028 26473 4 Skin 0.04 protein_coding synonymous_variant LOW 33C>T Asn11Asn
M0105743 AACFNLFA_00028 26534 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -29A>G None
M0105744 AACFNLFA_00028 26565 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -60C>A None
M0105745 AACFNLFA_00028 26593 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -88G>A None
M0105746 AACFNLFA_00028 26607 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -102T>C None
M0105747 AACFNLFA_00028 26618 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -113A>G None
M0105748 AACFNLFA_00028 26712 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -207T>G None
M0105749 AACFNLFA_00028 26861 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -356C>G None
M0105750 AACFNLFA_00029 26877 5 Skin 0.05 protein_coding missense_variant MODERATE 546A>T Lys182Asn
M0105751 AACFNLFA_00029 26898 5 Skin 0.05 protein_coding synonymous_variant LOW 525T>C Thr175Thr
M0105752 AACFNLFA_00029 26904 5 Skin 0.05 protein_coding synonymous_variant LOW 519G>A Arg173Arg
M0105753 AACFNLFA_00029 26922 5 Skin 0.05 protein_coding missense_variant MODERATE 501T>A Asp167Glu
M0105754 AACFNLFA_00028 26692 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -187G>A None
M0105755 AACFNLFA_00029 26937 4 Skin 0.04 protein_coding synonymous_variant LOW 486T>A Gly162Gly
M0105756 AACFNLFA_00029 26940 4 Skin 0.04 protein_coding synonymous_variant LOW 483C>T Thr161Thr
M0105757 AACFNLFA_00029 26970 3 Skin 0.03 protein_coding synonymous_variant LOW 453T>C Ile151Ile
M0105758 AACFNLFA_00029 26997 3 Skin 0.03 protein_coding synonymous_variant LOW 426C>A Pro142Pro
M0105759 AACFNLFA_00029 27009 3 Skin 0.03 protein_coding synonymous_variant LOW 414C>T Gly138Gly
M0105760 AACFNLFA_00029 27039 4 Skin 0.04 protein_coding synonymous_variant LOW 384C>T Leu128Leu
M0105761 AACFNLFA_00048 42415 3 Skin 0.03 protein_coding missense_variant MODERATE 592C>T Leu198Phe
M0105762 AACFNLFA_00051 43775 3 Skin 0.03 protein_coding synonymous_variant LOW 132G>A Gln44Gln
M0105763 AACFNLFA_00051 44178 3 Skin 0.03 protein_coding missense_variant MODERATE 535T>G Ser179Ala
M0105764 AACFNLFA_00051 44219 3 Skin 0.03 protein_coding synonymous_variant LOW 576A>G Pro192Pro
M0105765 AACFNLFA_00046 40003 3 Skin 0.03 protein_coding synonymous_variant LOW 601T>C Leu201Leu
M0105766 AACFNLFA_00046 40094 3 Skin 0.03 protein_coding synonymous_variant LOW 510A>G Leu170Leu
M0105767 AACFNLFA_00046 40396 3 Skin 0.03 protein_coding synonymous_variant LOW 208C>T Leu70Leu
M0105768 AACFNLFA_00046 40439 3 Skin 0.03 protein_coding synonymous_variant LOW 165C>A Pro55Pro
M0105769 AACFNLFA_00041 40618 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4285G>T None
M0105770 AACFNLFA_00041 40624 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4291A>G None
M0105771 AACFNLFA_00041 40643 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4310C>A None
M0105772 AACFNLFA_00041 40650 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4317G>A None
M0105773 AACFNLFA_00041 40653 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4320G>A None
M0105774 AACFNLFA_00041 40734 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4401C>T None
M0105775 AACFNLFA_00047 40890 3 Skin 0.03 protein_coding synonymous_variant LOW 135C>T Cys45Cys
M0105776 AACFNLFA_00047 40891 3 Skin 0.03 protein_coding missense_variant MODERATE 136A>G Asn46Asp
M0105777 AACFNLFA_00047 40996 3 Skin 0.03 protein_coding missense_variant MODERATE 241G>A Glu81Lys
M0105778 AACFNLFA_00047 41014 3 Skin 0.03 protein_coding missense_variant MODERATE 259A>G Asn87Asp
M0105779 AACFNLFA_00047 41101 3 Skin 0.03 protein_coding missense_variant MODERATE 346G>A Val116Ile
M0105780 AACFNLFA_00015 15530 5 Skin 0.05 protein_coding missense_variant MODERATE 545A>C Asn182Thr
M0105781 AACFNLFA_00015 15888 3 Skin 0.03 protein_coding missense_variant MODERATE 187C>A Leu63Ile
M0105782 AACFNLFA_00015 15391 3 Skin 0.03 protein_coding missense_variant MODERATE 684A>C Lys228Asn
M0105783 AACFNLFA_00061 51813 3 Skin 0.03 protein_coding missense_variant MODERATE 716G>A Ser239Asn
M0105784 AACFNLFA_00061 52250 3 Skin 0.03 protein_coding missense_variant MODERATE 1153G>A Ala385Thr
M0105785 AACFNLFA_00033 29608 3 Skin 0.03 protein_coding synonymous_variant LOW 24T>A Ile8Ile
M0105786 AACFNLFA_00042 36461 3 Skin 0.03 protein_coding missense_variant MODERATE 356G>A Gly119Asp
M0105787 AACFNLFA_00043 37360 4 Skin 0.04 protein_coding synonymous_variant LOW 576T>C Ala192Ala
M0105788 AACFNLFA_00043 37364 4 Skin 0.04 protein_coding missense_variant MODERATE 572T>G Met191Arg
M0105789 AACFNLFA_00043 37396 3 Skin 0.03 protein_coding synonymous_variant LOW 540G>A Leu180Leu
M0105790 AACFNLFA_00043 37411 3 Skin 0.03 protein_coding synonymous_variant LOW 525T>C Gly175Gly
M0105791 AACFNLFA_00043 37420 4 Skin 0.04 protein_coding synonymous_variant LOW 516C>A Ile172Ile
M0105792 AACFNLFA_00043 37479 4 Skin 0.04 protein_coding synonymous_variant LOW 457T>C Leu153Leu
M0105793 AACFNLFA_00043 37608 4 Skin 0.04 protein_coding missense_variant MODERATE 328G>A Val110Ile
M0105794 AACFNLFA_00043 37627 3 Skin 0.03 protein_coding missense_variant MODERATE 309T>G Phe103Leu
M0105795 AACFNLFA_00043 37651 4 Skin 0.04 protein_coding synonymous_variant LOW 285A>C Ile95Ile
M0105796 AACFNLFA_00043 37681 4 Skin 0.04 protein_coding synonymous_variant LOW 255C>A Ala85Ala
M0105797 AACFNLFA_00043 37683 4 Skin 0.04 protein_coding missense_variant MODERATE 253G>T Ala85Ser
M0105798 AACFNLFA_00041 37941 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1608G>A None
M0105799 AACFNLFA_00044 37994 4 Skin 0.04 protein_coding synonymous_variant LOW 639A>G Glu213Glu
M0105800 AACFNLFA_00044 38121 5 Skin 0.05 protein_coding missense_variant MODERATE 512G>A Gly171Glu
M0105801 AACFNLFA_00044 38138 5 Skin 0.05 protein_coding synonymous_variant LOW 495C>T Ile165Ile
M0105802 AACFNLFA_00044 38306 3 Skin 0.03 protein_coding missense_variant MODERATE 327G>T Glu109Asp
M0105803 AACFNLFA_00044 38387 5 Skin 0.05 protein_coding synonymous_variant LOW 246C>T Tyr82Tyr
M0105804 AACFNLFA_00044 38425 6 Skin 0.06 protein_coding missense_variant MODERATE 208A>T Ser70Cys
M0105805 AACFNLFA_00044 38504 5 Skin 0.05 protein_coding synonymous_variant LOW 129G>A Thr43Thr
M0105806 AACFNLFA_00044 38534 6 Skin 0.06 protein_coding synonymous_variant LOW 99A>T Gly33Gly
M0105807 AACFNLFA_00044 38623 6 Skin 0.06 protein_coding synonymous_variant LOW 10C>T Leu4Leu
M0105808 AACFNLFA_00045 38782 4 Skin 0.04 protein_coding synonymous_variant LOW 264C>T Arg88Arg
M0105809 AACFNLFA_00045 38869 4 Skin 0.04 protein_coding missense_variant MODERATE 177G>C Arg59Ser
M0105810 AACFNLFA_00045 38971 4 Skin 0.04 protein_coding synonymous_variant LOW 75C>A Val25Val
M0105811 AACFNLFA_00041 39268 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2935T>C None
M0105812 AACFNLFA_00041 39270 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2937A>C None
M0105813 AACFNLFA_00041 39273 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2940C>T None
M0105814 AACFNLFA_00041 39352 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3019A>G None
M0105815 AACFNLFA_00041 39404 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3071A>C None
M0105816 AACFNLFA_00046 39482 3 Skin 0.03 protein_coding synonymous_variant LOW 1122A>G Leu374Leu
M0105817 AACFNLFA_00046 39506 3 Skin 0.03 protein_coding synonymous_variant LOW 1098T>C Gly366Gly
M0105818 AACFNLFA_00046 39520 3 Skin 0.03 protein_coding missense_variant MODERATE 1084G>A Val362Ile
M0105819 AACFNLFA_00046 39546 3 Skin 0.03 protein_coding missense_variant MODERATE 1058A>G Asn353Ser
M0105820 AACFNLFA_00046 39584 3 Skin 0.03 protein_coding synonymous_variant LOW 1020T>A Ala340Ala
M0105821 AACFNLFA_00014 16625 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1523C>A None
M0105822 AACFNLFA_00044 38632 3 Skin 0.03 protein_coding missense_variant MODERATE 1G>A Val1Met
M0105823 AACFNLFA_00029 27225 3 Skin 0.03 protein_coding synonymous_variant LOW 198C>T Arg66Arg
M0105824 AACFNLFA_00028 27516 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1011G>A None
M0105825 AACFNLFA_00019 19539 3 Skin 0.03 protein_coding missense_variant MODERATE 220G>A Ala74Thr
M0105826 AACFNLFA_00019 19649 4 Skin 0.04 protein_coding missense_variant MODERATE 110A>C Asp37Ala
M0105827 AACFNLFA_00020 19955 3 Skin 0.03 protein_coding synonymous_variant LOW 750C>T Ile250Ile
M0105828 AACFNLFA_00020 20063 3 Skin 0.03 protein_coding synonymous_variant LOW 642A>T Ile214Ile
M0105829 AACFNLFA_00043 37795 4 Skin 0.04 protein_coding synonymous_variant LOW 141G>A Glu47Glu
M0105830 AACFNLFA_00043 37804 4 Skin 0.04 protein_coding synonymous_variant LOW 132C>T Val44Val
M0105831 AACFNLFA_00043 37822 4 Skin 0.04 protein_coding synonymous_variant LOW 114C>T Asn38Asn
M0105832 AACFNLFA_00043 37856 4 Skin 0.04 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0105833 AACFNLFA_00028 30002 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3497T>C None
M0105834 AACFNLFA_00028 30021 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3516A>T None
M0105835 AACFNLFA_00028 30027 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3522C>T None
M0105836 AACFNLFA_00043 37806 3 Skin 0.03 protein_coding missense_variant MODERATE 130G>A Val44Ile
M0105837 AACFNLFA_00044 38330 3 Skin 0.03 protein_coding synonymous_variant LOW 303T>C Asn101Asn
M0105838 AACFNLFA_00045 38911 3 Skin 0.03 protein_coding synonymous_variant LOW 135C>T Asn45Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
AACFNLFA_00003 3.A.1.123.3 85.4 1.4e-199 95 518 0.8185 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
AACFNLFA_00004 1.C.20.1.6 100 5e-25 1 52 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.20 The Nisin (Nisin) Family
AMAABALD_00003 3.A.1.123.3 85.4 1.4e-199 95 518 0.8185 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
AMAABALD_00004 1.C.20.1.6 100 5e-25 1 52 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.20 The Nisin (Nisin) Family