Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1000
  Reference Plasmid   NZ_CP092457.1
  Reference Plasmid Size   4275
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0106238 BBBBHNBP_00001 242 3 Skin 0.75 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0106239 BBBBHNBP_00001 248 3 Skin 0.75 protein_coding synonymous_variant LOW 174G>A Lys58Lys
M0106240 BBBBHNBP_00001 251 3 Skin 0.75 protein_coding synonymous_variant LOW 177A>G Lys59Lys
M0106241 BBBBHNBP_00001 255 3 Skin 0.75 protein_coding missense_variant MODERATE 181C>G Gln61Glu
M0106242 BBBBHNBP_00001 257 3 Skin 0.75 protein_coding missense_variant MODERATE 183G>C Gln61His
M0106243 BBBBHNBP_00001 266 3 Skin 0.75 protein_coding synonymous_variant LOW 192T>C Ala64Ala
M0106244 BBBBHNBP_00001 299 4 Skin 1.00 protein_coding synonymous_variant LOW 225A>G Glu75Glu
M0106245 BBBBHNBP_00001 307 4 Skin 1.00 protein_coding missense_variant MODERATE 233T>C Ile78Thr
M0106246 BBBBHNBP_00001 312 4 Skin 1.00 protein_coding missense_variant MODERATE 238A>G Asn80Asp
M0106247 BBBBHNBP_00001 315 4 Skin 1.00 protein_coding synonymous_variant LOW 241A>C Arg81Arg
M0106248 BBBBHNBP_00001 427 4 Skin 1.00 protein_coding missense_variant MODERATE 353A>G Lys118Arg
M0106249 BBBBHNBP_00001 506 4 Skin 1.00 protein_coding synonymous_variant LOW 432G>A Glu144Glu
M0106250 BBBBHNBP_00001 561 4 Skin 1.00 protein_coding missense_variant MODERATE 487C>G Gln163Glu
M0106251 BBBBHNBP_00002 703 3 Skin 0.75 protein_coding missense_variant MODERATE 923A>G Gln308Arg
M0106252 BBBBHNBP_00002 869 3 Skin 0.75 protein_coding missense_variant MODERATE 757G>T Ala253Ser
M0106253 BBBBHNBP_00002 884 4 Skin 1.00 protein_coding missense_variant MODERATE 742A>G Ile248Val
M0106254 BBBBHNBP_00002 1116 3 Skin 0.75 protein_coding missense_variant MODERATE 510T>G Ser170Arg
M0106255 BBBBHNBP_00002 1124 3 Skin 0.75 protein_coding missense_variant MODERATE 502G>A Glu168Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term