Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1002
  Reference Plasmid   NZ_CP093167.1
  Reference Plasmid Size   11811
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0106292 MKCPOOEO_00001 7322 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3375T>A None
M0106293 MKCPOOEO_00005 7357 3 Skin 0.60 protein_coding synonymous_variant LOW 33T>C Asp11Asp
M0106294 MKCPOOEO_00005 7395 3 Skin 0.60 protein_coding missense_variant MODERATE 71A>C Glu24Ala
M0106295 MKCPOOEO_00005 7399 3 Skin 0.60 protein_coding synonymous_variant LOW 75A>G Pro25Pro
M0106296 MKCPOOEO_00005 7408 3 Skin 0.60 protein_coding synonymous_variant LOW 84C>T Ile28Ile
M0106297 MKCPOOEO_00005 7428 3 Skin 0.60 protein_coding missense_variant MODERATE 104C>T Ser35Phe
M0106298 MKCPOOEO_00005 7429 3 Skin 0.60 protein_coding synonymous_variant LOW 105C>G Ser35Ser
M0106299 MKCPOOEO_00005 7437 3 Skin 0.60 protein_coding missense_variant MODERATE 113T>C Leu38Ser
M0106300 MKCPOOEO_00005 7453 3 Skin 0.60 protein_coding synonymous_variant LOW 129A>C Ser43Ser
M0106301 MKCPOOEO_00005 7465 3 Skin 0.60 protein_coding synonymous_variant LOW 141A>G Leu47Leu
M0106302 MKCPOOEO_00005 7473 3 Skin 0.60 protein_coding missense_variant MODERATE 149G>C Ser50Thr
M0106303 MKCPOOEO_00005 7552 3 Skin 0.60 protein_coding synonymous_variant LOW 228G>T Ser76Ser
M0106304 MKCPOOEO_00005 7558 3 Skin 0.60 protein_coding synonymous_variant LOW 234A>G Ala78Ala
M0106305 MKCPOOEO_00005 7567 3 Skin 0.60 protein_coding missense_variant MODERATE 243T>G Phe81Leu
M0106306 MKCPOOEO_00005 7706 3 Skin 0.60 protein_coding stop_lost&splice_region_variant HIGH 382T>G Ter128Gluext*?
M0106307 MKCPOOEO_00006 7755 3 Skin 0.60 protein_coding synonymous_variant LOW 45T>C Ala15Ala
M0106308 MKCPOOEO_00006 7809 3 Skin 0.60 protein_coding synonymous_variant LOW 99C>A Gly33Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term