Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1006
  Reference Plasmid   NZ_CP093195.1
  Reference Plasmid Size   8468
  Reference Plasmid GC Content   0.31
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0106325 MMJPPJDI_00001 204 11 Skin 0.41 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0106326 MMJPPJDI_00001 217 4 Skin 0.15 protein_coding missense_variant MODERATE 154G>A Val52Ile
M0106327 MMJPPJDI_00001 270 4 Skin 0.15 protein_coding synonymous_variant LOW 207C>T Asp69Asp
M0106328 MMJPPJDI_00001 321 3 Skin 0.11 protein_coding synonymous_variant LOW 258G>A Gln86Gln
M0106329 MMJPPJDI_00001 403 4 Skin 0.15 protein_coding missense_variant MODERATE 340T>A Leu114Ile
M0106330 MMJPPJDI_00001 405 4 Skin 0.15 protein_coding synonymous_variant LOW 342A>G Leu114Leu
M0106331 MMJPPJDI_00001 406 10 Skin 0.37 protein_coding missense_variant MODERATE 343G>A Asp115Asn
M0106332 MMJPPJDI_00001 408 10 Skin 0.37 protein_coding synonymous_variant LOW 345T>C Asp115Asp
M0106333 MMJPPJDI_00001 413 10 Skin 0.37 protein_coding missense_variant MODERATE 350G>A Ser117Asn
M0106334 MMJPPJDI_00001 432 3 Skin 0.11 protein_coding synonymous_variant LOW 369T>G Arg123Arg
M0106335 MMJPPJDI_00008 7287 6 Skin 0.22 protein_coding missense_variant MODERATE 791G>A Arg264Lys
M0106336 MMJPPJDI_00008 7424 6 Skin 0.22 protein_coding synonymous_variant LOW 654T>C His218His
M0106337 MMJPPJDI_00008 7615 3 Skin 0.11 protein_coding missense_variant MODERATE 463A>C Asn155His
M0106338 MMJPPJDI_00008 7667 6 Skin 0.22 protein_coding synonymous_variant LOW 411T>G Val137Val
M0106339 MMJPPJDI_00008 7715 6 Skin 0.22 protein_coding synonymous_variant LOW 363A>G Val121Val
M0106340 MMJPPJDI_00008 7742 3 Skin 0.11 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0106341 MMJPPJDI_00008 7936 5 Skin 0.19 protein_coding missense_variant MODERATE 142A>G Lys48Glu
M0106342 MMJPPJDI_00006 8436 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3174G>A None
M0106343 MMJPPJDI_00004 3289 9 Skin 0.33 protein_coding missense_variant MODERATE 464G>A Arg155Lys
M0106344 MMJPPJDI_00001 308 3 Skin 0.11 protein_coding missense_variant MODERATE 245A>G His82Arg
M0106345 MMJPPJDI_00001 309 3 Skin 0.11 protein_coding synonymous_variant LOW 246T>C His82His
M0106346 MMJPPJDI_00002 586 8 Skin 0.30 protein_coding missense_variant MODERATE 1312T>G Ser438Ala
M0106347 MMJPPJDI_00002 626 8 Skin 0.30 protein_coding synonymous_variant LOW 1272G>A Gln424Gln
M0106348 MMJPPJDI_00002 662 8 Skin 0.30 protein_coding synonymous_variant LOW 1236C>T Thr412Thr
M0106349 MMJPPJDI_00002 733 8 Skin 0.30 protein_coding missense_variant MODERATE 1165G>A Val389Met
M0106350 MMJPPJDI_00002 1183 6 Skin 0.22 protein_coding missense_variant MODERATE 715G>A Val239Ile
M0106351 MMJPPJDI_00002 1718 9 Skin 0.33 protein_coding synonymous_variant LOW 180T>G Gly60Gly
M0106352 MMJPPJDI_00002 1736 9 Skin 0.33 protein_coding synonymous_variant LOW 162C>T Tyr54Tyr
M0106353 MMJPPJDI_00002 1862 4 Skin 0.15 protein_coding synonymous_variant LOW 36T>C Val12Val
M0106354 MMJPPJDI_00006 8346 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3084C>A None
M0106355 MMJPPJDI_00006 8402 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3140G>T None
M0106356 MMJPPJDI_00001 171 6 Skin 0.22 protein_coding synonymous_variant LOW 108G>C Thr36Thr
M0106357 MMJPPJDI_00001 434 4 Skin 0.15 protein_coding missense_variant MODERATE 371C>A Pro124Gln
M0106358 MMJPPJDI_00001 438 4 Skin 0.15 protein_coding synonymous_variant LOW 375A>G Leu125Leu
M0106359 MMJPPJDI_00008 7040 3 Skin 0.11 protein_coding synonymous_variant LOW 1038T>C Ser346Ser
M0106360 MMJPPJDI_00008 7079 4 Skin 0.15 protein_coding synonymous_variant LOW 999A>G Gly333Gly
M0106361 MMJPPJDI_00008 7103 4 Skin 0.15 protein_coding synonymous_variant LOW 975T>C Asn325Asn
M0106362 MMJPPJDI_00008 7280 3 Skin 0.11 protein_coding missense_variant MODERATE 798T>G Asp266Glu
M0106363 MMJPPJDI_00002 1058 4 Skin 0.15 protein_coding synonymous_variant LOW 840A>G Thr280Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term