Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1029
  Reference Plasmid   NZ_CP097366.1
  Reference Plasmid Size   86293
  Reference Plasmid GC Content   0.53
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0192591 ADGJJGMH_00002 1423 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -360C>T None
M0192592 ADGJJGMH_00002 1425 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -358T>C None
M0192593 ADGJJGMH_00002 1437 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -346C>T None
M0192594 ADGJJGMH_00002 1447 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -336G>C None
M0192595 ADGJJGMH_00002 1454 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -329C>A None
M0192596 ADGJJGMH_00002 1459 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -324C>T None
M0192597 ADGJJGMH_00002 1484 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -299G>C None
M0192598 ADGJJGMH_00002 1577 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -206G>A None
M0192599 ADGJJGMH_00002 1590 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -193G>A None
M0192600 ADGJJGMH_00009 8753 5 Gut 0.25 protein_coding synonymous_variant LOW 21G>A Thr7Thr
M0192601 ADGJJGMH_00019 16411 5 Gut 0.25 protein_coding synonymous_variant LOW 87T>C Val29Val
M0192602 ADGJJGMH_00019 16432 5 Gut 0.25 protein_coding synonymous_variant LOW 108C>T Ala36Ala
M0192603 ADGJJGMH_00019 16460 7 Gut 0.35 protein_coding missense_variant MODERATE 136A>G Thr46Ala
M0192604 ADGJJGMH_00016 19960 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4712A>G None
M0192605 ADGJJGMH_00024 20358 4 Gut 0.20 protein_coding missense_variant MODERATE 139G>C Glu47Gln
M0192606 ADGJJGMH_00024 20360 4 Gut 0.20 protein_coding synonymous_variant LOW 141A>G Glu47Glu
M0192607 ADGJJGMH_00024 20363 4 Gut 0.20 protein_coding synonymous_variant LOW 144C>A Gly48Gly
M0192608 ADGJJGMH_00024 20366 4 Gut 0.20 protein_coding synonymous_variant LOW 147A>C Gly49Gly
M0192609 ADGJJGMH_00025 20940 4 Gut 0.20 protein_coding missense_variant MODERATE 249G>T Gln83His
M0192610 ADGJJGMH_00027 21764 3 Gut 0.15 protein_coding missense_variant MODERATE 250T>G Trp84Gly
M0192611 ADGJJGMH_00027 21766 3 Gut 0.15 protein_coding missense_variant MODERATE 248A>G Glu83Gly
M0192612 ADGJJGMH_00028 22179 3 Gut 0.15 protein_coding synonymous_variant LOW 108T>C Ala36Ala
M0192613 ADGJJGMH_00028 22182 3 Gut 0.15 protein_coding synonymous_variant LOW 111G>A Thr37Thr
M0192614 ADGJJGMH_00028 22197 3 Gut 0.15 protein_coding synonymous_variant LOW 126C>T Arg42Arg
M0192615 ADGJJGMH_00028 22216 3 Gut 0.15 protein_coding missense_variant MODERATE 145G>A Val49Met
M0192616 ADGJJGMH_00029 22678 3 Gut 0.15 protein_coding missense_variant MODERATE 22T>C Phe8Leu
M0192617 ADGJJGMH_00029 22679 3 Gut 0.15 protein_coding missense_variant MODERATE 23T>G Phe8Cys
M0192618 ADGJJGMH_00029 22686 3 Gut 0.15 protein_coding synonymous_variant LOW 30G>A Gly10Gly
M0192619 ADGJJGMH_00029 22692 3 Gut 0.15 protein_coding synonymous_variant LOW 36T>G Pro12Pro
M0192620 ADGJJGMH_00029 22719 3 Gut 0.15 protein_coding synonymous_variant LOW 63T>G Ala21Ala
M0192621 ADGJJGMH_00029 22746 3 Gut 0.15 protein_coding synonymous_variant LOW 90T>C Asn30Asn
M0192622 ADGJJGMH_00029 22837 3 Gut 0.15 protein_coding missense_variant MODERATE 181G>T Gly61Cys
M0192623 ADGJJGMH_00030 23022 3 Gut 0.15 protein_coding missense_variant MODERATE 74C>T Ala25Val
M0192624 ADGJJGMH_00030 23023 3 Gut 0.15 protein_coding synonymous_variant LOW 75A>C Ala25Ala
M0192625 ADGJJGMH_00030 23070 3 Gut 0.15 protein_coding missense_variant MODERATE 122A>C Asp41Ala
M0192626 ADGJJGMH_00030 23071 3 Gut 0.15 protein_coding synonymous_variant LOW 123T>C Asp41Asp
M0192627 ADGJJGMH_00030 23074 3 Gut 0.15 protein_coding synonymous_variant LOW 126A>G Ser42Ser
M0192628 ADGJJGMH_00030 23131 3 Gut 0.15 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0192629 ADGJJGMH_00030 23147 3 Gut 0.15 protein_coding missense_variant MODERATE 199G>A Val67Ile
M0192630 ADGJJGMH_00030 23158 3 Gut 0.15 protein_coding synonymous_variant LOW 210T>C Val70Val
M0192631 ADGJJGMH_00030 23161 3 Gut 0.15 protein_coding synonymous_variant LOW 213C>A Gly71Gly
M0192632 ADGJJGMH_00030 23165 3 Gut 0.15 protein_coding synonymous_variant LOW 217T>C Leu73Leu
M0192633 ADGJJGMH_00030 23208 3 Gut 0.15 protein_coding missense_variant MODERATE 260G>C Gly87Ala
M0192634 ADGJJGMH_00030 23221 3 Gut 0.15 protein_coding synonymous_variant LOW 273T>C Gly91Gly
M0192635 ADGJJGMH_00030 23260 3 Gut 0.15 protein_coding synonymous_variant LOW 312T>C Arg104Arg
M0192636 ADGJJGMH_00030 23261 3 Gut 0.15 protein_coding missense_variant MODERATE 313G>A Gly105Ser
M0192637 ADGJJGMH_00030 23262 3 Gut 0.15 protein_coding missense_variant MODERATE 314G>A Gly105Asp
M0192638 ADGJJGMH_00030 23267 3 Gut 0.15 protein_coding missense_variant MODERATE 319A>C Ile107Leu
M0192639 ADGJJGMH_00030 23299 3 Gut 0.15 protein_coding synonymous_variant LOW 351T>C Val117Val
M0192640 ADGJJGMH_00030 23320 3 Gut 0.15 protein_coding synonymous_variant LOW 372G>T Thr124Thr
M0192641 ADGJJGMH_00030 23323 3 Gut 0.15 protein_coding synonymous_variant LOW 375T>C Ala125Ala
M0192642 ADGJJGMH_00030 23329 3 Gut 0.15 protein_coding synonymous_variant LOW 381A>G Ser127Ser
M0192643 ADGJJGMH_00030 23335 3 Gut 0.15 protein_coding synonymous_variant LOW 387T>C Thr129Thr
M0192644 ADGJJGMH_00030 23338 3 Gut 0.15 protein_coding synonymous_variant LOW 390A>G Glu130Glu
M0192645 ADGJJGMH_00030 23347 3 Gut 0.15 protein_coding missense_variant MODERATE 399T>G His133Gln
M0192646 ADGJJGMH_00030 23386 3 Gut 0.15 protein_coding synonymous_variant LOW 438T>C Phe146Phe
M0192647 ADGJJGMH_00030 23389 3 Gut 0.15 protein_coding synonymous_variant LOW 441T>C Arg147Arg
M0192648 ADGJJGMH_00030 23413 3 Gut 0.15 protein_coding synonymous_variant LOW 465G>A Thr155Thr
M0192649 ADGJJGMH_00030 23446 3 Gut 0.15 protein_coding synonymous_variant LOW 498G>A Ser166Ser
M0192650 ADGJJGMH_00030 23488 3 Gut 0.15 protein_coding synonymous_variant LOW 540G>T Ala180Ala
M0192651 ADGJJGMH_00030 23491 3 Gut 0.15 protein_coding synonymous_variant LOW 543T>G Pro181Pro
M0192652 ADGJJGMH_00030 23494 3 Gut 0.15 protein_coding synonymous_variant LOW 546C>T Val182Val
M0192653 ADGJJGMH_00030 23629 3 Gut 0.15 protein_coding synonymous_variant LOW 681G>A Val227Val
M0192654 ADGJJGMH_00030 23749 3 Gut 0.15 protein_coding synonymous_variant LOW 801C>T Asp267Asp
M0192655 ADGJJGMH_00030 23754 3 Gut 0.15 protein_coding missense_variant MODERATE 806A>G Glu269Gly
M0192656 ADGJJGMH_00030 23757 3 Gut 0.15 protein_coding missense_variant MODERATE 809G>A Gly270Asp
M0192657 ADGJJGMH_00030 23758 3 Gut 0.15 protein_coding synonymous_variant LOW 810T>C Gly270Gly
M0192658 ADGJJGMH_00030 23761 3 Gut 0.15 protein_coding synonymous_variant LOW 813C>T Gly271Gly
M0192659 ADGJJGMH_00030 23767 3 Gut 0.15 protein_coding synonymous_variant LOW 819G>C Val273Val
M0192660 ADGJJGMH_00030 23771 3 Gut 0.15 protein_coding missense_variant MODERATE 823T>C Cys275Arg
M0192661 ADGJJGMH_00030 23773 3 Gut 0.15 protein_coding synonymous_variant LOW 825T>C Cys275Cys
M0192662 ADGJJGMH_00030 23776 3 Gut 0.15 protein_coding synonymous_variant LOW 828T>G Val276Val
M0192663 ADGJJGMH_00030 23788 3 Gut 0.15 protein_coding synonymous_variant LOW 840T>C Ala280Ala
M0192664 ADGJJGMH_00030 24443 3 Gut 0.15 protein_coding missense_variant MODERATE 1495C>A Leu499Met
M0192665 ADGJJGMH_00030 24461 3 Gut 0.15 protein_coding missense_variant MODERATE 1513A>C Lys505Gln
M0192666 ADGJJGMH_00030 24463 3 Gut 0.15 protein_coding missense_variant MODERATE 1515A>C Lys505Asn
M0192667 ADGJJGMH_00030 24464 3 Gut 0.15 protein_coding missense_variant MODERATE 1516G>T Val506Phe
M0192668 ADGJJGMH_00030 24465 3 Gut 0.15 protein_coding missense_variant MODERATE 1517T>C Val506Ala
M0192669 ADGJJGMH_00030 24466 3 Gut 0.15 protein_coding synonymous_variant LOW 1518C>T Val506Val
M0192670 ADGJJGMH_00030 24470 3 Gut 0.15 protein_coding missense_variant MODERATE 1522C>T Leu508Phe
M0192671 ADGJJGMH_00030 24475 3 Gut 0.15 protein_coding synonymous_variant LOW 1527A>T Ala509Ala
M0192672 ADGJJGMH_00030 24490 3 Gut 0.15 protein_coding synonymous_variant LOW 1542G>A Glu514Glu
M0192673 ADGJJGMH_00030 24497 3 Gut 0.15 protein_coding missense_variant MODERATE 1549T>G Ser517Ala
M0192674 ADGJJGMH_00030 24498 3 Gut 0.15 protein_coding stop_gained HIGH 1550C>A Ser517*
M0192675 ADGJJGMH_00030 24505 3 Gut 0.15 protein_coding synonymous_variant LOW 1557C>T Asp519Asp
M0192676 ADGJJGMH_00030 24526 3 Gut 0.15 protein_coding synonymous_variant LOW 1578C>T Leu526Leu
M0192677 ADGJJGMH_00030 24529 3 Gut 0.15 protein_coding synonymous_variant LOW 1581T>C Ser527Ser
M0192678 ADGJJGMH_00030 24556 3 Gut 0.15 protein_coding synonymous_variant LOW 1608C>T Ser536Ser
M0192679 ADGJJGMH_00030 24625 3 Gut 0.15 protein_coding synonymous_variant LOW 1677T>G Leu559Leu
M0192680 ADGJJGMH_00030 24639 3 Gut 0.15 protein_coding missense_variant MODERATE 1691G>C Ser564Thr
M0192681 ADGJJGMH_00030 24661 3 Gut 0.15 protein_coding synonymous_variant LOW 1713T>C Arg571Arg
M0192682 ADGJJGMH_00030 24739 3 Gut 0.15 protein_coding synonymous_variant LOW 1791A>C Ala597Ala
M0192683 ADGJJGMH_00030 24742 3 Gut 0.15 protein_coding synonymous_variant LOW 1794G>A Gly598Gly
M0192684 ADGJJGMH_00030 24772 3 Gut 0.15 protein_coding synonymous_variant LOW 1824G>A Lys608Lys
M0192685 ADGJJGMH_00030 24848 3 Gut 0.15 protein_coding missense_variant MODERATE 1900T>G Ser634Ala
M0192686 ADGJJGMH_00030 24879 3 Gut 0.15 protein_coding missense_variant MODERATE 1931G>A Arg644His
M0192687 ADGJJGMH_00030 24881 3 Gut 0.15 protein_coding missense_variant MODERATE 1933G>A Ala645Thr
M0192688 ADGJJGMH_00030 24885 3 Gut 0.15 protein_coding missense_variant MODERATE 1937A>C Asp646Ala
M0192689 ADGJJGMH_00031 24979 3 Gut 0.15 protein_coding synonymous_variant LOW 18A>C Thr6Thr
M0192690 ADGJJGMH_00031 25003 3 Gut 0.15 protein_coding synonymous_variant LOW 42T>C Asn14Asn
M0192691 ADGJJGMH_00031 25006 3 Gut 0.15 protein_coding synonymous_variant LOW 45C>A Ala15Ala
M0192692 ADGJJGMH_00031 25021 3 Gut 0.15 protein_coding missense_variant MODERATE 60A>T Glu20Asp
M0192693 ADGJJGMH_00031 25100 3 Gut 0.15 protein_coding missense_variant MODERATE 139A>G Met47Val
M0192694 ADGJJGMH_00031 25123 3 Gut 0.15 protein_coding synonymous_variant LOW 162C>T Ser54Ser
M0192695 ADGJJGMH_00031 25377 3 Gut 0.15 protein_coding missense_variant MODERATE 416T>C Val139Ala
M0192696 ADGJJGMH_00033 26264 3 Gut 0.15 protein_coding synonymous_variant LOW 156T>A Ala52Ala
M0192697 ADGJJGMH_00027 26735 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4722G>A None
M0192698 ADGJJGMH_00027 26740 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4727T>C None
M0192699 ADGJJGMH_00027 26754 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4741T>C None
M0192700 ADGJJGMH_00027 26756 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4743T>A None
M0192701 ADGJJGMH_00027 26757 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4744A>G None
M0192702 ADGJJGMH_00027 26774 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4761C>T None
M0192703 ADGJJGMH_00042 32983 6 Gut 0.30 protein_coding missense_variant MODERATE 49G>A Ala17Thr
M0192704 ADGJJGMH_00043 33443 8 Gut 0.40 protein_coding synonymous_variant LOW 180T>C Asp60Asp
M0192705 ADGJJGMH_00043 33551 8 Gut 0.40 protein_coding synonymous_variant LOW 288A>T Ile96Ile
M0192706 ADGJJGMH_00043 33557 8 Gut 0.40 protein_coding synonymous_variant LOW 294A>G Glu98Glu
M0192707 ADGJJGMH_00044 33637 8 Gut 0.40 protein_coding synonymous_variant LOW 30C>T Arg10Arg
M0192708 ADGJJGMH_00044 34485 8 Gut 0.40 protein_coding missense_variant MODERATE 878T>G Val293Gly
M0192709 ADGJJGMH_00044 34593 8 Gut 0.40 protein_coding missense_variant MODERATE 986C>T Pro329Leu
M0192710 ADGJJGMH_00044 35183 10 Gut 0.50 protein_coding missense_variant MODERATE 1576A>G Lys526Glu
M0192711 ADGJJGMH_00044 35389 10 Gut 0.50 protein_coding synonymous_variant LOW 1782C>A Pro594Pro
M0192712 ADGJJGMH_00044 36288 10 Gut 0.50 protein_coding missense_variant MODERATE 2681G>A Arg894Gln
M0192713 ADGJJGMH_00045 36657 10 Gut 0.50 protein_coding synonymous_variant LOW 2193C>A Pro731Pro
M0192714 ADGJJGMH_00045 36764 10 Gut 0.50 protein_coding missense_variant MODERATE 2086A>T Arg696Trp
M0192715 ADGJJGMH_00045 37011 10 Gut 0.50 protein_coding synonymous_variant LOW 1839C>A Pro613Pro
M0192716 ADGJJGMH_00045 38111 10 Gut 0.50 protein_coding missense_variant MODERATE 739G>A Val247Ile
M0192717 ADGJJGMH_00045 38262 10 Gut 0.50 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0192718 ADGJJGMH_00045 38279 10 Gut 0.50 protein_coding synonymous_variant LOW 571C>A Arg191Arg
M0192719 ADGJJGMH_00045 38435 10 Gut 0.50 protein_coding missense_variant MODERATE 415G>A Val139Ile
M0192720 ADGJJGMH_00045 38469 10 Gut 0.50 protein_coding synonymous_variant LOW 381A>G Glu127Glu
M0192721 ADGJJGMH_00045 38472 10 Gut 0.50 protein_coding synonymous_variant LOW 378C>T Arg126Arg
M0192722 ADGJJGMH_00045 38520 10 Gut 0.50 protein_coding synonymous_variant LOW 330A>C Ala110Ala
M0192723 ADGJJGMH_00045 38527 10 Gut 0.50 protein_coding missense_variant MODERATE 323C>T Ser108Phe
M0192724 ADGJJGMH_00046 39778 10 Gut 0.50 protein_coding synonymous_variant LOW 177T>C Thr59Thr
M0192725 ADGJJGMH_00049 42773 10 Gut 0.50 protein_coding synonymous_variant LOW 270T>C Leu90Leu
M0192726 ADGJJGMH_00050 43246 10 Gut 0.50 protein_coding synonymous_variant LOW 102A>G Arg34Arg
M0192727 ADGJJGMH_00050 43462 10 Gut 0.50 protein_coding synonymous_variant LOW 318T>C Val106Val
M0192728 ADGJJGMH_00050 43566 10 Gut 0.50 protein_coding missense_variant MODERATE 422C>T Ala141Val
M0192729 ADGJJGMH_00052 44028 10 Gut 0.50 protein_coding missense_variant MODERATE 211C>T Pro71Ser
M0192730 ADGJJGMH_00052 44033 10 Gut 0.50 protein_coding missense_variant MODERATE 206T>A Val69Glu
M0192731 ADGJJGMH_00052 44035 10 Gut 0.50 protein_coding synonymous_variant LOW 204A>T Ala68Ala
M0192732 ADGJJGMH_00053 44320 10 Gut 0.50 protein_coding synonymous_variant LOW 291T>C Cys97Cys
M0192733 ADGJJGMH_00053 44361 10 Gut 0.50 protein_coding missense_variant MODERATE 250G>A Glu84Lys
M0192734 ADGJJGMH_00046 44691 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4737A>T None
M0192735 ADGJJGMH_00046 44694 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4740T>C None
M0192736 ADGJJGMH_00048 47416 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4991T>C None
M0192737 ADGJJGMH_00057 47768 10 Gut 0.50 protein_coding missense_variant MODERATE 517T>G Ser173Ala
M0192738 ADGJJGMH_00057 47841 10 Gut 0.50 protein_coding synonymous_variant LOW 444G>A Glu148Glu
M0192739 ADGJJGMH_00057 47883 10 Gut 0.50 protein_coding synonymous_variant LOW 402A>G Val134Val
M0192740 ADGJJGMH_00058 48639 10 Gut 0.50 protein_coding synonymous_variant LOW 1899C>T Gly633Gly
M0192741 ADGJJGMH_00058 48801 10 Gut 0.50 protein_coding synonymous_variant LOW 1737G>A Arg579Arg
M0192742 ADGJJGMH_00058 49320 10 Gut 0.50 protein_coding synonymous_variant LOW 1218A>C Thr406Thr
M0192743 ADGJJGMH_00058 49353 10 Gut 0.50 protein_coding synonymous_variant LOW 1185A>G Leu395Leu
M0192744 ADGJJGMH_00058 49355 10 Gut 0.50 protein_coding synonymous_variant LOW 1183C>T Leu395Leu
M0192745 ADGJJGMH_00058 49434 10 Gut 0.50 protein_coding synonymous_variant LOW 1104T>A Thr368Thr
M0192746 ADGJJGMH_00058 49443 10 Gut 0.50 protein_coding synonymous_variant LOW 1095C>T Arg365Arg
M0192747 ADGJJGMH_00058 49448 10 Gut 0.50 protein_coding missense_variant MODERATE 1090A>G Asn364Asp
M0192748 ADGJJGMH_00058 49455 10 Gut 0.50 protein_coding missense_variant MODERATE 1083C>A Asp361Glu
M0192749 ADGJJGMH_00058 49458 10 Gut 0.50 protein_coding missense_variant MODERATE 1080A>T Glu360Asp
M0192750 ADGJJGMH_00058 49459 10 Gut 0.50 protein_coding missense_variant MODERATE 1079A>C Glu360Ala
M0192751 ADGJJGMH_00058 49500 10 Gut 0.50 protein_coding synonymous_variant LOW 1038T>C Gly346Gly
M0192752 ADGJJGMH_00058 49743 10 Gut 0.50 protein_coding synonymous_variant LOW 795A>G Gln265Gln
M0192753 ADGJJGMH_00058 50004 10 Gut 0.50 protein_coding synonymous_variant LOW 534T>C Ile178Ile
M0192754 ADGJJGMH_00059 50783 10 Gut 0.50 protein_coding synonymous_variant LOW 399T>C Ser133Ser
M0192755 ADGJJGMH_00059 51016 10 Gut 0.50 protein_coding missense_variant MODERATE 166C>G Pro56Ala
M0192756 ADGJJGMH_00060 51724 10 Gut 0.50 protein_coding synonymous_variant LOW 660T>C Ala220Ala
M0192757 ADGJJGMH_00060 52282 10 Gut 0.50 protein_coding synonymous_variant LOW 102G>C Pro34Pro
M0192758 ADGJJGMH_00061 52827 10 Gut 0.50 protein_coding synonymous_variant LOW 135C>T Pro45Pro
M0192759 ADGJJGMH_00062 53033 10 Gut 0.50 protein_coding synonymous_variant LOW 2973C>T Arg991Arg
M0192760 ADGJJGMH_00062 55442 10 Gut 0.50 protein_coding synonymous_variant LOW 564A>C Leu188Leu
M0192761 ADGJJGMH_00059 56164 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4983A>C None
M0192762 ADGJJGMH_00063 56759 10 Gut 0.50 protein_coding synonymous_variant LOW 168A>G Arg56Arg
M0192763 ADGJJGMH_00060 56966 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4583C>T None
M0192764 ADGJJGMH_00060 56975 10 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4592G>A None
M0192765 ADGJJGMH_00065 57491 10 Gut 0.50 protein_coding synonymous_variant LOW 249C>A Gly83Gly
M0192766 ADGJJGMH_00066 58168 10 Gut 0.50 protein_coding missense_variant MODERATE 149G>A Arg50His
M0192767 ADGJJGMH_00067 58367 10 Gut 0.50 protein_coding synonymous_variant LOW 660C>T Thr220Thr
M0192768 ADGJJGMH_00067 58547 10 Gut 0.50 protein_coding synonymous_variant LOW 480A>G Leu160Leu
M0192769 ADGJJGMH_00068 59545 10 Gut 0.50 protein_coding synonymous_variant LOW 810C>G Val270Val
M0192770 ADGJJGMH_00068 59565 10 Gut 0.50 protein_coding synonymous_variant LOW 790C>A Arg264Arg
M0192771 ADGJJGMH_00068 59632 10 Gut 0.50 protein_coding synonymous_variant LOW 723T>C Val241Val
M0192772 ADGJJGMH_00068 59638 10 Gut 0.50 protein_coding synonymous_variant LOW 717A>G Gly239Gly
M0192773 ADGJJGMH_00068 59650 10 Gut 0.50 protein_coding synonymous_variant LOW 705G>C Gly235Gly
M0192774 ADGJJGMH_00068 59674 10 Gut 0.50 protein_coding synonymous_variant LOW 681C>T Arg227Arg
M0192775 ADGJJGMH_00068 59702 10 Gut 0.50 protein_coding missense_variant MODERATE 653C>A Ala218Glu
M0192776 ADGJJGMH_00068 59707 10 Gut 0.50 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0192777 ADGJJGMH_00068 59710 10 Gut 0.50 protein_coding synonymous_variant LOW 645C>T Ile215Ile
M0192778 ADGJJGMH_00068 59716 10 Gut 0.50 protein_coding synonymous_variant LOW 639T>C Ala213Ala
M0192779 ADGJJGMH_00068 59756 10 Gut 0.50 protein_coding missense_variant MODERATE 599A>C Gln200Pro
M0192780 ADGJJGMH_00068 59763 10 Gut 0.50 protein_coding missense_variant MODERATE 592A>G Thr198Ala
M0192781 ADGJJGMH_00068 59764 10 Gut 0.50 protein_coding synonymous_variant LOW 591T>A Ala197Ala
M0192782 ADGJJGMH_00068 59770 10 Gut 0.50 protein_coding synonymous_variant LOW 585A>C Thr195Thr
M0192783 ADGJJGMH_00068 59803 10 Gut 0.50 protein_coding synonymous_variant LOW 552G>A Gln184Gln
M0192784 ADGJJGMH_00068 59823 10 Gut 0.50 protein_coding missense_variant MODERATE 532T>C Ser178Pro
M0192785 ADGJJGMH_00068 59836 10 Gut 0.50 protein_coding synonymous_variant LOW 519T>A Pro173Pro
M0192786 ADGJJGMH_00068 59851 10 Gut 0.50 protein_coding synonymous_variant LOW 504G>T Ala168Ala
M0192787 ADGJJGMH_00068 59853 10 Gut 0.50 protein_coding missense_variant MODERATE 502G>A Ala168Thr
M0192788 ADGJJGMH_00068 59914 10 Gut 0.50 protein_coding synonymous_variant LOW 441C>T Asn147Asn
M0192789 ADGJJGMH_00068 59965 10 Gut 0.50 protein_coding synonymous_variant LOW 390G>T Thr130Thr
M0192790 ADGJJGMH_00068 59983 10 Gut 0.50 protein_coding synonymous_variant LOW 372T>C Pro124Pro
M0192791 ADGJJGMH_00068 60277 10 Gut 0.50 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0192792 ADGJJGMH_00069 60736 10 Gut 0.50 protein_coding synonymous_variant LOW 597A>G Thr199Thr
M0192793 ADGJJGMH_00069 60925 10 Gut 0.50 protein_coding synonymous_variant LOW 408T>G Thr136Thr
M0192794 ADGJJGMH_00069 61095 10 Gut 0.50 protein_coding missense_variant MODERATE 238G>A Gly80Ser
M0192795 ADGJJGMH_00071 62110 10 Gut 0.50 protein_coding synonymous_variant LOW 291G>A Val97Val
M0192796 ADGJJGMH_00072 63575 10 Gut 0.50 protein_coding synonymous_variant LOW 2904C>T Ala968Ala
M0192797 ADGJJGMH_00072 64158 10 Gut 0.50 protein_coding missense_variant MODERATE 2321G>T Gly774Val
M0192798 ADGJJGMH_00072 64178 10 Gut 0.50 protein_coding synonymous_variant LOW 2301T>G Leu767Leu
M0192799 ADGJJGMH_00072 64247 10 Gut 0.50 protein_coding synonymous_variant LOW 2232T>G Val744Val
M0192800 ADGJJGMH_00072 64348 10 Gut 0.50 protein_coding missense_variant MODERATE 2131A>G Thr711Ala
M0192801 ADGJJGMH_00072 64720 10 Gut 0.50 protein_coding missense_variant MODERATE 1759T>G Ser587Ala
M0192802 ADGJJGMH_00072 64738 10 Gut 0.50 protein_coding missense_variant MODERATE 1741A>G Lys581Glu
M0192803 ADGJJGMH_00072 65929 10 Gut 0.50 protein_coding missense_variant MODERATE 550G>A Gly184Arg
M0192804 ADGJJGMH_00072 65987 10 Gut 0.50 protein_coding synonymous_variant LOW 492A>T Ala164Ala
M0192805 ADGJJGMH_00072 66098 10 Gut 0.50 protein_coding synonymous_variant LOW 381A>G Arg127Arg
M0192806 ADGJJGMH_00073 66697 10 Gut 0.50 protein_coding synonymous_variant LOW 136C>T Leu46Leu
M0192807 ADGJJGMH_00074 66847 10 Gut 0.50 protein_coding synonymous_variant LOW 1131T>C Ala377Ala
M0192808 ADGJJGMH_00074 67198 10 Gut 0.50 protein_coding missense_variant MODERATE 780C>A Phe260Leu
M0192809 ADGJJGMH_00075 68240 10 Gut 0.50 protein_coding synonymous_variant LOW 558A>G Gln186Gln
M0192810 ADGJJGMH_00076 68971 10 Gut 0.50 protein_coding synonymous_variant LOW 282A>C Arg94Arg
M0192811 ADGJJGMH_00077 69551 10 Gut 0.50 protein_coding synonymous_variant LOW 1008T>A Val336Val
M0192812 ADGJJGMH_00084 76904 10 Gut 0.50 protein_coding synonymous_variant LOW 804C>T Pro268Pro
M0192813 ADGJJGMH_00086 79285 10 Gut 0.50 protein_coding synonymous_variant LOW 270C>T Pro90Pro
M0192814 ADGJJGMH_00086 79549 10 Gut 0.50 protein_coding synonymous_variant LOW 6G>A Thr2Thr
M0192815 ADGJJGMH_00087 80394 10 Gut 0.50 protein_coding synonymous_variant LOW 801G>T Gly267Gly
M0192816 ADGJJGMH_00087 80903 9 Gut 0.45 protein_coding missense_variant MODERATE 292G>C Glu98Gln
M0192817 ADGJJGMH_00085 82953 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4684A>C None
M0192818 ADGJJGMH_00086 83310 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3756G>T None
M0192819 ADGJJGMH_00086 83378 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3824A>G None
M0192820 ADGJJGMH_00086 83392 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3838T>C None
M0192821 ADGJJGMH_00086 83398 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3844C>T None
M0192822 ADGJJGMH_00091 83483 9 Gut 0.45 protein_coding synonymous_variant LOW 174C>T Ile58Ile
M0192823 ADGJJGMH_00086 83668 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4114G>A None
M0192824 ADGJJGMH_00087 84881 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3687C>A None
M0192825 ADGJJGMH_00087 84887 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3693T>G None
M0192826 ADGJJGMH_00087 84888 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3694C>T None
M0192827 ADGJJGMH_00087 84889 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3695T>C None
M0192828 ADGJJGMH_00087 84890 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3696A>T None
M0192829 ADGJJGMH_00087 84891 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3697C>T None
M0192830 ADGJJGMH_00087 84902 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3708C>A None
M0192831 ADGJJGMH_00087 84935 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -3741C>A None
M0192832 ADGJJGMH_00094 85018 9 Gut 0.45 protein_coding synonymous_variant LOW 573C>A Ala191Ala
M0192833 ADGJJGMH_00094 85401 9 Gut 0.45 protein_coding missense_variant MODERATE 190A>G Thr64Ala
M0192834 ADGJJGMH_00087 85683 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4489A>G None
M0192835 ADGJJGMH_00087 85693 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4499G>A None
M0192836 ADGJJGMH_00087 85741 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4547G>A None
M0192837 ADGJJGMH_00087 85764 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4570T>C None
M0192838 ADGJJGMH_00087 85951 9 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -4757G>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
ADGJJGMH_00003 ARO:3000873 100 5.12e-208 1 286 1.0000 1.0000 monobactam TEM beta-lactamase antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ADGJJGMH_00081 SPE00673.1|GH23 100 1.33e-115 1 161 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ADGJJGMH_00045 3.A.7.10.1 79.7 0 1 723 0.9439 7.5313 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
ADGJJGMH_00047 3.A.7.10.1 75.6 2.5e-189 1 401 0.8971 4.1771 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
ADGJJGMH_00055 1.E.53.1.10 100 2e-18 8 50 0.8600 1.0000 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family
ADGJJGMH_00069 3.A.7.10.1 74.9 1.5e-138 1 324 1.0000 3.4063 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
ADGJJGMH_00071 3.A.7.10.1 73.3 1.9e-40 1 116 1.0000 1.1979 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
ADGJJGMH_00074 3.A.7.10.1 77.8 1.7e-175 1 379 0.9921 3.9479 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
ADGJJGMH_00075 3.A.7.10.1 77.9 6.6e-124 1 271 0.9748 2.8021 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family