Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1030
  Reference Plasmid   NZ_CP097634.1
  Reference Plasmid Size   398841
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0106843 BANPOOBL_00278 250832 3 Skin 0.27 protein_coding synonymous_variant LOW 465G>A Lys155Lys
M0106844 BANPOOBL_00278 250838 3 Skin 0.27 protein_coding synonymous_variant LOW 459A>G Glu153Glu
M0106845 BANPOOBL_00278 250844 3 Skin 0.27 protein_coding synonymous_variant LOW 453T>C Ala151Ala
M0106846 BANPOOBL_00278 250853 3 Skin 0.27 protein_coding synonymous_variant LOW 444C>A Ser148Ser
M0106847 BANPOOBL_00278 250886 3 Skin 0.27 protein_coding synonymous_variant LOW 411C>T Leu137Leu
M0106848 BANPOOBL_00278 250937 3 Skin 0.27 protein_coding synonymous_variant LOW 360G>A Lys120Lys
M0106849 BANPOOBL_00278 250946 3 Skin 0.27 protein_coding synonymous_variant LOW 351A>G Glu117Glu
M0106850 BANPOOBL_00278 250949 3 Skin 0.27 protein_coding synonymous_variant LOW 348G>A Glu116Glu
M0106851 BANPOOBL_00278 250955 3 Skin 0.27 protein_coding synonymous_variant LOW 342G>A Val114Val
M0106852 BANPOOBL_00278 251030 3 Skin 0.27 protein_coding missense_variant MODERATE 267T>A Asp89Glu
M0106853 BANPOOBL_00278 251141 3 Skin 0.27 protein_coding synonymous_variant LOW 156A>G Pro52Pro
M0106854 BANPOOBL_00278 251153 3 Skin 0.27 protein_coding synonymous_variant LOW 144G>A Thr48Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
BANPOOBL_00105 Arsenic (As) 71 1.9e-52 2 139 0.9857 0.9650 prediction
BANPOOBL_00106 Arsenic (As) 84.3 1.3e-114 1 235 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BANPOOBL_00074 PHI:2659 hspAT1 86.1 4.1e-76 66 223 0.7085 1.0000 eudicots crown gall alpha-crystallin-type small heat shock proteins unaffected pathogenicity
BANPOOBL_00291 PHI:11549 B0251 81.1 2.1e-127 1 270 1.0000 1.0000 rodents brucellosis nitrite reductase, copper-containing unaffected pathogenicity
BANPOOBL_00293 PHI:11559 B0249 88.7 1.6e-79 1 150 1.0000 1.0000 rodents brucellosis lipase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BANPOOBL_00244 AUC13337.1|GH13_26 94.5 0 1 840 1 1
BANPOOBL_00245 AUC13338.1|CBM48|GH13_10 97.7 0 1 601 1 1
BANPOOBL_00348 CDI11894.1|GH23 99.5 5.35e-269 1 385 1 0.9872
BANPOOBL_00352 CDI11898.1|GH23 97.7 2.1e-268 1 390 1 0.9924
BANPOOBL_00395 QYO62262.1|GH13 73.2 2.46e-157 3 338 0.6211 0.7494





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BANPOOBL_00401 3.D.4.5.1 70.7 1.9e-73 8 181 0.7945 1.5963 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily