Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1035
  Reference Plasmid   NZ_CP099315.1
  Reference Plasmid Size   116191
  Reference Plasmid GC Content   0.52
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0193150 CADCLANL_00114 88373 3 Gut 1.00 protein_coding missense_variant MODERATE 10A>G Thr4Ala
M0193151 CADCLANL_00115 88889 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -56G>C None
M0193152 CADCLANL_00115 88902 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -43T>G None
M0193153 CADCLANL_00115 88903 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -42T>C None
M0193154 CADCLANL_00115 88951 3 Gut 1.00 protein_coding missense_variant MODERATE 7T>C Tyr3His
M0193155 CADCLANL_00115 89127 3 Gut 1.00 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0193156 CADCLANL_00115 89146 3 Gut 1.00 protein_coding missense_variant MODERATE 202C>G Pro68Ala
M0193157 CADCLANL_00115 89187 3 Gut 1.00 protein_coding synonymous_variant LOW 243C>T Ala81Ala
M0193158 CADCLANL_00116 89280 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -95T>C None
M0193159 CADCLANL_00116 91918 3 Gut 1.00 protein_coding missense_variant MODERATE 2544A>C Glu848Asp
M0193160 CADCLANL_00117 92573 3 Gut 1.00 protein_coding missense_variant MODERATE 605C>G Thr202Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CADCLANL_00037 PHI:3165 hopA1 80 3.7e-24 1 60 1.0000 0.8805 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CADCLANL_00080 QVQ59771.1|GH23 100 6.66e-127 1 179 1 1
CADCLANL_00127 AXZ45803.1|GT2 100 4.94e-241 1 331 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CADCLANL_00069 1.E.53.1.7 72 5.3e-14 1 50 0.9434 0.7042 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family
CADCLANL_00129 2.A.53.3.1 90.9 3.1e-249 1 492 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family