Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1036
  Reference Plasmid   NZ_CP099341.1
  Reference Plasmid Size   87118
  Reference Plasmid GC Content   0.50
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0193161 NOGGBPGP_00043 42885 3 Gut 1.00 protein_coding synonymous_variant LOW 180A>C Arg60Arg
M0193162 NOGGBPGP_00043 42903 3 Gut 1.00 protein_coding synonymous_variant LOW 198T>A Thr66Thr
M0193163 NOGGBPGP_00043 42966 3 Gut 1.00 protein_coding synonymous_variant LOW 261C>T Leu87Leu
M0193164 NOGGBPGP_00043 42967 3 Gut 1.00 protein_coding missense_variant MODERATE 262A>G Thr88Ala
M0193165 NOGGBPGP_00043 42972 3 Gut 1.00 protein_coding synonymous_variant LOW 267C>T Pro89Pro
M0193166 NOGGBPGP_00043 43041 3 Gut 1.00 protein_coding synonymous_variant LOW 336G>A Arg112Arg
M0193167 NOGGBPGP_00043 43087 3 Gut 1.00 protein_coding missense_variant MODERATE 382G>T Ala128Ser
M0193168 NOGGBPGP_00043 43235 3 Gut 1.00 protein_coding missense_variant MODERATE 530C>T Ala177Val
M0193169 NOGGBPGP_00043 43239 3 Gut 1.00 protein_coding synonymous_variant LOW 534T>C Ala178Ala
M0193170 NOGGBPGP_00043 43245 3 Gut 1.00 protein_coding synonymous_variant LOW 540T>C Ala180Ala
M0193171 NOGGBPGP_00043 43251 3 Gut 1.00 protein_coding synonymous_variant LOW 546C>T Asp182Asp
M0193172 NOGGBPGP_00043 43311 3 Gut 1.00 protein_coding synonymous_variant LOW 606T>C His202His
M0193173 NOGGBPGP_00043 43350 3 Gut 1.00 protein_coding synonymous_variant LOW 645T>C Ser215Ser
M0193174 NOGGBPGP_00043 43359 3 Gut 1.00 protein_coding synonymous_variant LOW 654G>A Gly218Gly
M0193175 NOGGBPGP_00043 43404 3 Gut 1.00 protein_coding synonymous_variant LOW 699A>G Ala233Ala
M0193176 NOGGBPGP_00043 43438 3 Gut 1.00 protein_coding missense_variant MODERATE 733T>G Leu245Val
M0193177 NOGGBPGP_00043 43439 3 Gut 1.00 protein_coding missense_variant MODERATE 734T>C Leu245Ser
M0193178 NOGGBPGP_00035 43493 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4225G>A None
M0193179 NOGGBPGP_00035 43496 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4228T>A None
M0193180 NOGGBPGP_00035 43517 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4249C>T None
M0193181 NOGGBPGP_00035 43589 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4321C>T None
M0193182 NOGGBPGP_00044 43862 3 Gut 1.00 protein_coding synonymous_variant LOW 33C>T Asn11Asn
M0193183 NOGGBPGP_00044 43886 3 Gut 1.00 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0193184 NOGGBPGP_00045 44092 3 Gut 1.00 protein_coding synonymous_variant LOW 441C>T Asn147Asn
M0193185 NOGGBPGP_00045 44332 3 Gut 1.00 protein_coding synonymous_variant LOW 201C>T Asn67Asn
M0193186 NOGGBPGP_00045 44407 3 Gut 1.00 protein_coding synonymous_variant LOW 126A>T Thr42Thr
M0193187 NOGGBPGP_00036 44590 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4792A>G None
M0193188 NOGGBPGP_00036 44598 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4800A>G None
M0193189 NOGGBPGP_00036 44602 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4804G>A None
M0193190 NOGGBPGP_00036 44603 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4805T>C None
M0193191 NOGGBPGP_00036 44625 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4827T>C None
M0193192 NOGGBPGP_00036 44626 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4828A>G None
M0193193 NOGGBPGP_00036 44629 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4831T>C None
M0193194 NOGGBPGP_00036 44634 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4836T>C None
M0193195 NOGGBPGP_00036 44656 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4858A>T None
M0193196 NOGGBPGP_00036 44678 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4880G>A None
M0193197 NOGGBPGP_00036 44688 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4890T>C None
M0193198 NOGGBPGP_00036 44691 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4893T>C None
M0193199 NOGGBPGP_00036 44748 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4950A>G None
M0193200 NOGGBPGP_00036 44755 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4957G>A None
M0193201 NOGGBPGP_00046 44919 3 Gut 1.00 protein_coding synonymous_variant LOW 159A>G Lys53Lys
M0193202 NOGGBPGP_00046 45036 3 Gut 1.00 protein_coding synonymous_variant LOW 276G>T Ala92Ala
M0193203 NOGGBPGP_00046 45465 3 Gut 1.00 protein_coding synonymous_variant LOW 705T>C Asp235Asp
M0193204 NOGGBPGP_00046 45556 3 Gut 1.00 protein_coding missense_variant MODERATE 796G>A Val266Ile
M0193205 NOGGBPGP_00046 45576 3 Gut 1.00 protein_coding synonymous_variant LOW 816T>C Phe272Phe
M0193206 NOGGBPGP_00046 45606 3 Gut 1.00 protein_coding synonymous_variant LOW 846T>G Gly282Gly
M0193207 NOGGBPGP_00046 45609 3 Gut 1.00 protein_coding synonymous_variant LOW 849T>G Gly283Gly
M0193208 NOGGBPGP_00046 45629 3 Gut 1.00 protein_coding missense_variant MODERATE 869G>A Gly290Asp
M0193209 NOGGBPGP_00046 45672 3 Gut 1.00 protein_coding synonymous_variant LOW 912G>A Val304Val
M0193210 NOGGBPGP_00047 46028 3 Gut 1.00 protein_coding missense_variant MODERATE 292C>T Leu98Phe
M0193211 NOGGBPGP_00047 46038 3 Gut 1.00 protein_coding missense_variant MODERATE 302T>C Leu101Ser
M0193212 NOGGBPGP_00048 46148 3 Gut 1.00 protein_coding missense_variant MODERATE 1258A>G Ile420Val
M0193213 NOGGBPGP_00048 46254 3 Gut 1.00 protein_coding synonymous_variant LOW 1152T>G Ser384Ser
M0193214 NOGGBPGP_00048 46303 3 Gut 1.00 protein_coding missense_variant MODERATE 1103G>A Arg368His
M0193215 NOGGBPGP_00048 46314 3 Gut 1.00 protein_coding synonymous_variant LOW 1092G>A Glu364Glu
M0193216 NOGGBPGP_00048 46392 3 Gut 1.00 protein_coding synonymous_variant LOW 1014G>C Gly338Gly
M0193217 NOGGBPGP_00048 46416 3 Gut 1.00 protein_coding synonymous_variant LOW 990C>G Ala330Ala
M0193218 NOGGBPGP_00048 46466 3 Gut 1.00 protein_coding missense_variant MODERATE 940C>T Pro314Ser
M0193219 NOGGBPGP_00048 46854 3 Gut 1.00 protein_coding synonymous_variant LOW 552G>A Glu184Glu
M0193220 NOGGBPGP_00048 46863 3 Gut 1.00 protein_coding synonymous_variant LOW 543A>T Pro181Pro
M0193221 NOGGBPGP_00048 46880 3 Gut 1.00 protein_coding synonymous_variant LOW 526C>T Leu176Leu
M0193222 NOGGBPGP_00048 46884 3 Gut 1.00 protein_coding missense_variant MODERATE 522G>C Leu174Phe
M0193223 NOGGBPGP_00048 46888 3 Gut 1.00 protein_coding missense_variant MODERATE 518C>T Thr173Ile
M0193224 NOGGBPGP_00048 46923 3 Gut 1.00 protein_coding synonymous_variant LOW 483A>T Gly161Gly
M0193225 NOGGBPGP_00048 46968 3 Gut 1.00 protein_coding synonymous_variant LOW 438T>C Ala146Ala
M0193226 NOGGBPGP_00048 46995 3 Gut 1.00 protein_coding synonymous_variant LOW 411G>A Val137Val
M0193227 NOGGBPGP_00048 47054 3 Gut 1.00 protein_coding missense_variant MODERATE 352T>G Phe118Val
M0193228 NOGGBPGP_00048 47063 3 Gut 1.00 protein_coding missense_variant MODERATE 343T>C Ser115Pro
M0193229 NOGGBPGP_00048 47064 3 Gut 1.00 protein_coding synonymous_variant LOW 342C>T Ile114Ile
M0193230 NOGGBPGP_00048 47071 3 Gut 1.00 protein_coding missense_variant MODERATE 335A>G His112Arg
M0193231 NOGGBPGP_00048 47073 3 Gut 1.00 protein_coding synonymous_variant LOW 333T>C Asn111Asn
M0193232 NOGGBPGP_00048 47076 3 Gut 1.00 protein_coding missense_variant MODERATE 330A>G Ile110Met
M0193233 NOGGBPGP_00048 47078 3 Gut 1.00 protein_coding missense_variant MODERATE 328A>G Ile110Val
M0193234 NOGGBPGP_00048 47094 3 Gut 1.00 protein_coding synonymous_variant LOW 312T>C Phe104Phe
M0193235 NOGGBPGP_00048 47150 3 Gut 1.00 protein_coding missense_variant MODERATE 256A>G Thr86Ala
M0193236 NOGGBPGP_00048 47266 3 Gut 1.00 protein_coding missense_variant MODERATE 140C>T Pro47Leu
M0193237 NOGGBPGP_00048 47286 3 Gut 1.00 protein_coding synonymous_variant LOW 120C>T Arg40Arg
M0193238 NOGGBPGP_00048 47379 3 Gut 1.00 protein_coding synonymous_variant LOW 27T>C Ser9Ser
M0193239 NOGGBPGP_00049 47496 3 Gut 1.00 protein_coding missense_variant MODERATE 347A>G Asp116Gly
M0193240 NOGGBPGP_00049 47510 3 Gut 1.00 protein_coding synonymous_variant LOW 333G>T Leu111Leu
M0193241 NOGGBPGP_00049 47814 3 Gut 1.00 protein_coding missense_variant MODERATE 29A>C Asp10Ala
M0193242 NOGGBPGP_00044 48110 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4216C>T None
M0193243 NOGGBPGP_00044 48127 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4233A>G None
M0193244 NOGGBPGP_00044 48136 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4242T>C None
M0193245 NOGGBPGP_00044 48197 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4303C>T None
M0193246 NOGGBPGP_00044 48219 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4325T>C None
M0193247 NOGGBPGP_00044 48222 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4328C>G None
M0193248 NOGGBPGP_00044 48433 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4539G>C None
M0193249 NOGGBPGP_00051 48498 3 Gut 1.00 protein_coding synonymous_variant LOW 18G>A Ser6Ser
M0193250 NOGGBPGP_00051 48508 3 Gut 1.00 protein_coding missense_variant MODERATE 28T>C Tyr10His
M0193251 NOGGBPGP_00051 48525 3 Gut 1.00 protein_coding synonymous_variant LOW 45A>G Pro15Pro
M0193252 NOGGBPGP_00051 48534 3 Gut 1.00 protein_coding synonymous_variant LOW 54C>T Ile18Ile
M0193253 NOGGBPGP_00051 48574 3 Gut 1.00 protein_coding missense_variant MODERATE 94C>T Leu32Phe
M0193254 NOGGBPGP_00051 48592 3 Gut 1.00 protein_coding missense_variant MODERATE 112G>A Asp38Asn
M0193255 NOGGBPGP_00051 48621 3 Gut 1.00 protein_coding synonymous_variant LOW 141T>A Gly47Gly
M0193256 NOGGBPGP_00051 48656 3 Gut 1.00 protein_coding missense_variant MODERATE 176G>A Arg59Gln
M0193257 NOGGBPGP_00051 48666 3 Gut 1.00 protein_coding synonymous_variant LOW 186A>G Pro62Pro
M0193258 NOGGBPGP_00051 48739 3 Gut 1.00 protein_coding missense_variant MODERATE 259C>T His87Tyr
M0193259 NOGGBPGP_00051 48748 3 Gut 1.00 protein_coding missense_variant MODERATE 268A>G Asn90Asp
M0193260 NOGGBPGP_00051 48756 3 Gut 1.00 protein_coding synonymous_variant LOW 276G>A Val92Val
M0193261 NOGGBPGP_00051 48759 3 Gut 1.00 protein_coding synonymous_variant LOW 279A>G Leu93Leu
M0193262 NOGGBPGP_00051 48768 3 Gut 1.00 protein_coding synonymous_variant LOW 288A>G Glu96Glu
M0193263 NOGGBPGP_00051 48852 3 Gut 1.00 protein_coding synonymous_variant LOW 372G>A Arg124Arg
M0193264 NOGGBPGP_00051 48999 3 Gut 1.00 protein_coding synonymous_variant LOW 519A>C Pro173Pro
M0193265 NOGGBPGP_00051 49000 3 Gut 1.00 protein_coding missense_variant MODERATE 520T>A Ser174Thr
M0193266 NOGGBPGP_00051 49062 3 Gut 1.00 protein_coding synonymous_variant LOW 582A>G Ala194Ala
M0193267 NOGGBPGP_00051 49101 3 Gut 1.00 protein_coding synonymous_variant LOW 621T>A Pro207Pro
M0193268 NOGGBPGP_00051 49126 3 Gut 1.00 protein_coding missense_variant MODERATE 646A>C Ser216Arg
M0193269 NOGGBPGP_00051 49186 3 Gut 1.00 protein_coding missense_variant MODERATE 706G>A Asp236Asn
M0193270 NOGGBPGP_00051 49192 3 Gut 1.00 protein_coding missense_variant MODERATE 712A>G Ile238Val
M0193271 NOGGBPGP_00051 49216 3 Gut 1.00 protein_coding missense_variant MODERATE 736A>G Ser246Gly
M0193272 NOGGBPGP_00051 49280 3 Gut 1.00 protein_coding missense_variant MODERATE 800A>G Glu267Gly
M0193273 NOGGBPGP_00051 49386 3 Gut 1.00 protein_coding missense_variant MODERATE 906G>T Lys302Asn
M0193274 NOGGBPGP_00045 49466 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4934C>A None
M0193275 NOGGBPGP_00045 49505 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4973A>C None
M0193276 NOGGBPGP_00045 49506 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4974T>C None
M0193277 NOGGBPGP_00048 49563 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2158G>A None
M0193278 NOGGBPGP_00048 49577 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2172C>T None
M0193279 NOGGBPGP_00048 49578 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2173A>G None
M0193280 NOGGBPGP_00048 49600 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2195G>A None
M0193281 NOGGBPGP_00048 49647 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2242C>A None
M0193282 NOGGBPGP_00048 49648 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2243G>A None
M0193283 NOGGBPGP_00048 49651 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2246A>G None
M0193284 NOGGBPGP_00048 49659 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2254C>T None
M0193285 NOGGBPGP_00048 49676 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2271C>T None
M0193286 NOGGBPGP_00052 49880 3 Gut 1.00 protein_coding synonymous_variant LOW 54T>C Tyr18Tyr
M0193287 NOGGBPGP_00052 49919 3 Gut 1.00 protein_coding synonymous_variant LOW 93T>C Ala31Ala
M0193288 NOGGBPGP_00052 49985 3 Gut 1.00 protein_coding synonymous_variant LOW 159C>T Asp53Asp
M0193289 NOGGBPGP_00052 50031 3 Gut 1.00 protein_coding missense_variant MODERATE 205A>G Met69Val
M0193290 NOGGBPGP_00052 50034 3 Gut 1.00 protein_coding missense_variant MODERATE 208T>G Ser70Ala
M0193291 NOGGBPGP_00052 50036 3 Gut 1.00 protein_coding synonymous_variant LOW 210T>C Ser70Ser
M0193292 NOGGBPGP_00052 50063 3 Gut 1.00 protein_coding synonymous_variant LOW 237T>G Val79Val
M0193293 NOGGBPGP_00052 50207 3 Gut 1.00 protein_coding synonymous_variant LOW 381A>G Ser127Ser
M0193294 NOGGBPGP_00052 50216 3 Gut 1.00 protein_coding synonymous_variant LOW 390T>C Arg130Arg
M0193295 NOGGBPGP_00052 50237 3 Gut 1.00 protein_coding synonymous_variant LOW 411T>C Pro137Pro
M0193296 NOGGBPGP_00052 50327 3 Gut 1.00 protein_coding synonymous_variant LOW 501C>T Val167Val
M0193297 NOGGBPGP_00052 50340 3 Gut 1.00 protein_coding missense_variant MODERATE 514C>T Pro172Ser
M0193298 NOGGBPGP_00052 50364 3 Gut 1.00 protein_coding missense_variant MODERATE 538A>G Lys180Glu
M0193299 NOGGBPGP_00052 50393 3 Gut 1.00 protein_coding synonymous_variant LOW 567G>A Gly189Gly
M0193300 NOGGBPGP_00052 50402 3 Gut 1.00 protein_coding synonymous_variant LOW 576C>A Arg192Arg
M0193301 NOGGBPGP_00052 50405 3 Gut 1.00 protein_coding synonymous_variant LOW 579T>G Leu193Leu
M0193302 NOGGBPGP_00052 50408 3 Gut 1.00 protein_coding synonymous_variant LOW 582C>T Ala194Ala
M0193303 NOGGBPGP_00052 50414 3 Gut 1.00 protein_coding synonymous_variant LOW 588G>A Val196Val
M0193304 NOGGBPGP_00053 50630 3 Gut 1.00 protein_coding synonymous_variant LOW 156T>C Arg52Arg
M0193305 NOGGBPGP_00053 50669 3 Gut 1.00 protein_coding synonymous_variant LOW 195T>G Leu65Leu
M0193306 NOGGBPGP_00053 50687 3 Gut 1.00 protein_coding synonymous_variant LOW 213C>T Phe71Phe
M0193307 NOGGBPGP_00053 50695 3 Gut 1.00 protein_coding splice_region_variant&stop_retained_variant LOW 221A>G Ter74Ter
M0193308 NOGGBPGP_00048 50698 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3293C>T None
M0193309 NOGGBPGP_00054 50738 3 Gut 1.00 protein_coding synonymous_variant LOW 30T>G Arg10Arg
M0193310 NOGGBPGP_00054 50763 3 Gut 1.00 protein_coding missense_variant MODERATE 55A>G Asn19Asp
M0193311 NOGGBPGP_00054 50781 3 Gut 1.00 protein_coding missense_variant MODERATE 73C>G Leu25Val
M0193312 NOGGBPGP_00054 50792 3 Gut 1.00 protein_coding synonymous_variant LOW 84C>T Ser28Ser
M0193313 NOGGBPGP_00054 50816 3 Gut 1.00 protein_coding synonymous_variant LOW 108C>T Ala36Ala
M0193314 NOGGBPGP_00054 50840 3 Gut 1.00 protein_coding synonymous_variant LOW 132C>T Thr44Thr
M0193315 NOGGBPGP_00054 50858 3 Gut 1.00 protein_coding synonymous_variant LOW 150T>C Thr50Thr
M0193316 NOGGBPGP_00054 50869 3 Gut 1.00 protein_coding missense_variant MODERATE 161A>G His54Arg
M0193317 NOGGBPGP_00054 50871 3 Gut 1.00 protein_coding missense_variant MODERATE 163C>A Leu55Met
M0193318 NOGGBPGP_00054 50895 3 Gut 1.00 protein_coding synonymous_variant LOW 187C>A Arg63Arg
M0193319 NOGGBPGP_00054 50899 3 Gut 1.00 protein_coding missense_variant MODERATE 191T>C Ile64Thr
M0193320 NOGGBPGP_00054 50903 3 Gut 1.00 protein_coding synonymous_variant LOW 195G>A Glu65Glu
M0193321 NOGGBPGP_00054 50924 3 Gut 1.00 protein_coding synonymous_variant LOW 216T>G Ala72Ala
M0193322 NOGGBPGP_00054 50926 3 Gut 1.00 protein_coding missense_variant MODERATE 218C>T Ala73Val
M0193323 NOGGBPGP_00054 50967 3 Gut 1.00 protein_coding missense_variant MODERATE 259T>A Ser87Thr
M0193324 NOGGBPGP_00054 50977 3 Gut 1.00 protein_coding missense_variant MODERATE 269T>C Val90Ala
M0193325 NOGGBPGP_00055 51292 3 Gut 1.00 protein_coding synonymous_variant LOW 150T>A Arg50Arg
M0193326 NOGGBPGP_00055 51295 3 Gut 1.00 protein_coding synonymous_variant LOW 153C>T Asn51Asn
M0193327 NOGGBPGP_00055 51301 3 Gut 1.00 protein_coding missense_variant MODERATE 159G>C Lys53Asn
M0193328 NOGGBPGP_00055 51302 3 Gut 1.00 protein_coding missense_variant MODERATE 160T>C Tyr54His
M0193329 NOGGBPGP_00055 51325 3 Gut 1.00 protein_coding synonymous_variant LOW 183T>C Tyr61Tyr
M0193330 NOGGBPGP_00055 51328 3 Gut 1.00 protein_coding synonymous_variant LOW 186T>G Val62Val
M0193331 NOGGBPGP_00055 51330 3 Gut 1.00 protein_coding missense_variant MODERATE 188T>G Leu63Arg
M0193332 NOGGBPGP_00055 51355 3 Gut 1.00 protein_coding synonymous_variant LOW 213C>G Thr71Thr
M0193333 NOGGBPGP_00055 51382 3 Gut 1.00 protein_coding synonymous_variant LOW 240G>A Val80Val
M0193334 NOGGBPGP_00055 51393 3 Gut 1.00 protein_coding missense_variant MODERATE 251T>A Leu84His
M0193335 NOGGBPGP_00055 51403 3 Gut 1.00 protein_coding synonymous_variant LOW 261C>T Ser87Ser
M0193336 NOGGBPGP_00055 51414 3 Gut 1.00 protein_coding missense_variant MODERATE 272G>A Arg91Lys
M0193337 NOGGBPGP_00055 51439 3 Gut 1.00 protein_coding synonymous_variant LOW 297G>T Leu99Leu
M0193338 NOGGBPGP_00055 51442 3 Gut 1.00 protein_coding synonymous_variant LOW 300A>T Val100Val
M0193339 NOGGBPGP_00055 51463 3 Gut 1.00 protein_coding synonymous_variant LOW 321A>G Gln107Gln
M0193340 NOGGBPGP_00055 51471 3 Gut 1.00 protein_coding missense_variant MODERATE 329C>T Pro110Leu
M0193341 NOGGBPGP_00055 51517 3 Gut 1.00 protein_coding synonymous_variant LOW 375A>T Gly125Gly
M0193342 NOGGBPGP_00055 51528 3 Gut 1.00 protein_coding missense_variant MODERATE 386C>T Thr129Ile
M0193343 NOGGBPGP_00055 51529 3 Gut 1.00 protein_coding synonymous_variant LOW 387C>G Thr129Thr
M0193344 NOGGBPGP_00055 51532 3 Gut 1.00 protein_coding synonymous_variant LOW 390A>G Glu130Glu
M0193345 NOGGBPGP_00055 51535 3 Gut 1.00 protein_coding missense_variant MODERATE 393C>A Asp131Glu
M0193346 NOGGBPGP_00055 51547 3 Gut 1.00 protein_coding synonymous_variant LOW 405T>A Ala135Ala
M0193347 NOGGBPGP_00055 51564 3 Gut 1.00 protein_coding missense_variant MODERATE 422A>G His141Arg
M0193348 NOGGBPGP_00055 51566 3 Gut 1.00 protein_coding missense_variant MODERATE 424G>A Asp142Asn
M0193349 NOGGBPGP_00055 51571 3 Gut 1.00 protein_coding synonymous_variant LOW 429G>A Ala143Ala
M0193350 NOGGBPGP_00055 51601 3 Gut 1.00 protein_coding missense_variant MODERATE 459A>C Glu153Asp
M0193351 NOGGBPGP_00055 51619 3 Gut 1.00 protein_coding synonymous_variant LOW 477T>G Arg159Arg
M0193352 NOGGBPGP_00055 51676 3 Gut 1.00 protein_coding synonymous_variant LOW 534C>T Arg178Arg
M0193353 NOGGBPGP_00055 51682 3 Gut 1.00 protein_coding synonymous_variant LOW 540C>T Val180Val
M0193354 NOGGBPGP_00055 51729 3 Gut 1.00 protein_coding missense_variant MODERATE 587A>G Asn196Ser
M0193355 NOGGBPGP_00055 51763 3 Gut 1.00 protein_coding synonymous_variant LOW 621G>A Arg207Arg
M0193356 NOGGBPGP_00055 51797 3 Gut 1.00 protein_coding missense_variant MODERATE 655A>G Ile219Val
M0193357 NOGGBPGP_00055 51859 3 Gut 1.00 protein_coding synonymous_variant LOW 717C>G Pro239Pro
M0193358 NOGGBPGP_00055 51923 3 Gut 1.00 protein_coding missense_variant MODERATE 781A>G Thr261Ala
M0193359 NOGGBPGP_00048 51975 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4570T>C None
M0193360 NOGGBPGP_00048 51976 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4571G>A None
M0193361 NOGGBPGP_00048 51985 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4580A>T None
M0193362 NOGGBPGP_00048 51990 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4585A>G None
M0193363 NOGGBPGP_00048 52024 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4619A>T None
M0193364 NOGGBPGP_00048 52067 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4662T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
NOGGBPGP_00022 VFG000936 Aerobactin 93.3 0 2 732 0.9986 1 Nutritional/Metabolic factor ferric aerobactin receptor precusor IutA experiment
NOGGBPGP_00023 VFG000618 Aerobactin 94.4 7e-254 1 445 1.0 1 Nutritional/Metabolic factor aerobactin synthesis protein IucC, lysine 6-monooxygenase experiment
NOGGBPGP_00024 VFG000938 Aerobactin 96.6 0 1 580 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucC experiment
NOGGBPGP_00025 VFG000616 Aerobactin 94.6 4.4e-186 1 315 1.0 1 Nutritional/Metabolic factor aerobactin synthesis protein IucB experiment
NOGGBPGP_00026 VFG000940 Aerobactin 92.8 0 1 573 0.9983 0.9983 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucD experiment
NOGGBPGP_00022 VFG000936 Aerobactin 93.3 0 2 732 0.9986 1 Nutritional/Metabolic factor ferric aerobactin receptor precusor IutA prediction
NOGGBPGP_00023 VFG033954 Aerobactin 94.6 1.4e-253 1 445 1.0 1 Nutritional/Metabolic factor L-lysine 6-monooxygenase IucD prediction
NOGGBPGP_00024 VFG000938 Aerobactin 96.6 0 1 580 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucC prediction
NOGGBPGP_00025 VFG033986 Aerobactin 94.6 3.3e-185 1 315 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucB prediction
NOGGBPGP_00026 VFG012526 Aerobactin 94.6 0 1 573 0.9983 0.9983 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucD prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
NOGGBPGP_00022 PHI:6563 iucA 87.2 0 1 732 1.0000 0.9986 rodents pneumonia aerobactin reduced virulence
NOGGBPGP_00023 PHI:3610 iucD 95.3 1.6e-244 1 423 0.9506 0.9953 birds colibacillosis aerobactin reduced virulence
NOGGBPGP_00024 PHI:124069 iucC (PAGR_g3925) 83.7 1e-299 1 577 0.9948 0.9983 monocots None aerobactin siderophores unaffected pathogenicity
NOGGBPGP_00025 PHI:124068 iucB (PAGR_g3926) 81 7.6e-161 1 315 1.0000 1.0000 monocots None aerobactin siderophores unaffected pathogenicity
NOGGBPGP_00026 PHI:124067 iucA (PAGR_g3927) 77.7 1.1e-266 1 573 0.9983 0.9598 monocots None aerobactin siderophores unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
NOGGBPGP_00008 3.A.7.10.1 96.4 1.9e-53 1 110 1.0000 1.1458 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
NOGGBPGP_00038 8.B.24.2.1 97.3 2.7e-55 1 110 0.9565 0.8661 8 Accessory Factors Involved in Transport 8.B Ribosomally synthesized protein/peptide toxins/agonists that target channels and carriers 8.B.24 The Colicin Immunity Protein (ColIP) Functional Family
NOGGBPGP_00068 3.A.7.10.1 98.6 1.7e-119 1 217 1.0000 2.2604 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family