Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1045
  Reference Plasmid   NZ_CP102715.1
  Reference Plasmid Size   44665
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0193526 CJLJNDMC_00009 6342 3 Gut 0.75 protein_coding missense_variant MODERATE 614C>A Ala205Glu
M0193527 CJLJNDMC_00009 6343 3 Gut 0.75 protein_coding synonymous_variant LOW 615A>G Ala205Ala
M0193528 CJLJNDMC_00009 6604 3 Gut 0.75 protein_coding synonymous_variant LOW 876A>G Leu292Leu
M0193529 CJLJNDMC_00009 6616 3 Gut 0.75 protein_coding synonymous_variant LOW 888T>C Ile296Ile
M0193530 CJLJNDMC_00009 6625 3 Gut 0.75 protein_coding synonymous_variant LOW 897A>G Glu299Glu
M0193531 CJLJNDMC_00009 6628 3 Gut 0.75 protein_coding synonymous_variant LOW 900T>C Ser300Ser
M0193532 CJLJNDMC_00009 6629 3 Gut 0.75 protein_coding synonymous_variant LOW 901T>C Leu301Leu
M0193533 CJLJNDMC_00009 7071 3 Gut 0.75 protein_coding missense_variant MODERATE 1343C>T Ala448Val
M0193534 CJLJNDMC_00009 7150 3 Gut 0.75 protein_coding synonymous_variant LOW 1422C>T Ile474Ile
M0193535 CJLJNDMC_00009 7197 3 Gut 0.75 protein_coding missense_variant MODERATE 1469A>G Lys490Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term