Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1058
  Reference Plasmid   NZ_CP103198.1
  Reference Plasmid Size   76095
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0195414 JMJKJMJA_00008 10280 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3090G>A None
M0195415 JMJKJMJA_00014 10463 3 Gut 0.08 protein_coding missense_variant MODERATE 647A>G Gln216Arg
M0195416 JMJKJMJA_00014 10880 3 Gut 0.08 protein_coding missense_variant MODERATE 230A>T Gln77Leu
M0195417 JMJKJMJA_00014 10899 3 Gut 0.08 protein_coding missense_variant MODERATE 211T>C Tyr71His
M0195418 JMJKJMJA_00051 58734 4 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3931G>T None
M0195419 JMJKJMJA_00059 59632 4 Gut 0.11 protein_coding missense_variant MODERATE 404C>A Thr135Asn
M0195420 JMJKJMJA_00059 59643 4 Gut 0.11 protein_coding synonymous_variant LOW 393C>A Pro131Pro
M0195421 JMJKJMJA_00059 60021 3 Gut 0.08 protein_coding synonymous_variant LOW 15A>G Ser5Ser
M0195422 JMJKJMJA_00059 60030 3 Gut 0.08 protein_coding synonymous_variant LOW 6C>T Asn2Asn
M0195423 JMJKJMJA_00052 60039 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4854T>A None
M0195424 JMJKJMJA_00009 7419 4 Gut 0.11 protein_coding missense_variant MODERATE 508A>C Asn170His
M0195425 JMJKJMJA_00009 7774 6 Gut 0.17 protein_coding synonymous_variant LOW 153G>C Leu51Leu
M0195426 JMJKJMJA_00009 7825 3 Gut 0.08 protein_coding missense_variant MODERATE 102T>G Asp34Glu
M0195427 JMJKJMJA_00010 7960 3 Gut 0.08 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0195428 JMJKJMJA_00010 8047 4 Gut 0.11 protein_coding synonymous_variant LOW 450A>G Val150Val
M0195429 JMJKJMJA_00010 8492 3 Gut 0.08 protein_coding missense_variant MODERATE 5T>C Val2Ala
M0195430 JMJKJMJA_00035 37418 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2094C>A None
M0195431 JMJKJMJA_00041 38337 4 Gut 0.11 protein_coding missense_variant MODERATE 658A>C Thr220Pro
M0195432 JMJKJMJA_00044 43389 3 Gut 0.08 protein_coding missense_variant MODERATE 513G>A Met171Ile
M0195433 JMJKJMJA_00005 5024 3 Gut 0.08 protein_coding missense_variant MODERATE 1795A>C Met599Leu
M0195434 JMJKJMJA_00005 5092 3 Gut 0.08 protein_coding synonymous_variant LOW 1863A>G Leu621Leu
M0195435 JMJKJMJA_00005 5130 3 Gut 0.08 protein_coding missense_variant MODERATE 1901T>C Leu634Pro
M0195436 JMJKJMJA_00034 30750 3 Gut 0.08 protein_coding missense_variant MODERATE 1333A>T Asn445Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JMJKJMJA_00030 UVR07275.1|GH2 99.8 0 1 616 1 0.961
JMJKJMJA_00031 BBK89475.1|GH29 100 0 1 590 1 1
JMJKJMJA_00033 UVR07270.1|GH16_12 100 0 1 457 1 1
JMJKJMJA_00046 UVR07214.1|GH16_16 100 2.86e-241 1 342 1 1
JMJKJMJA_00047 BBK89489.1|GH86 100 0 1 646 1 1
JMJKJMJA_00048 BBK89490.1|GH16_15 100 6.51e-206 1 265 1 1
JMJKJMJA_00049 BBK89491.1|GH117 100 0 1 410 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term