Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1095
  Reference Plasmid   NZ_CP110785.1
  Reference Plasmid Size   48504
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0107581 JOIDKEND_00021 20811 8 Skin 0.12 protein_coding missense_variant MODERATE 36C>A Asp12Glu
M0107582 JOIDKEND_00022 20971 8 Skin 0.12 protein_coding missense_variant MODERATE 514T>G Ser172Ala
M0107583 JOIDKEND_00023 21521 7 Skin 0.11 protein_coding missense_variant MODERATE 318T>A Asp106Glu
M0107584 JOIDKEND_00023 21743 8 Skin 0.12 protein_coding synonymous_variant LOW 96A>G Leu32Leu
M0107585 JOIDKEND_00023 21815 7 Skin 0.11 protein_coding synonymous_variant LOW 24G>A Gln8Gln
M0107586 JOIDKEND_00005 3812 6 Skin 0.09 protein_coding missense_variant MODERATE 1250A>G Glu417Gly
M0107587 JOIDKEND_00006 5033 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -41C>T None
M0107588 JOIDKEND_00006 5085 3 Skin 0.05 protein_coding synonymous_variant LOW 12A>G Leu4Leu
M0107589 JOIDKEND_00006 5092 3 Skin 0.05 protein_coding missense_variant MODERATE 19A>G Thr7Ala
M0107590 JOIDKEND_00007 5969 4 Skin 0.06 protein_coding missense_variant MODERATE 104G>A Gly35Glu
M0107591 JOIDKEND_00008 6188 4 Skin 0.06 protein_coding synonymous_variant LOW 18G>A Glu6Glu
M0107592 JOIDKEND_00008 6284 3 Skin 0.05 protein_coding missense_variant MODERATE 114C>A Asn38Lys
M0107593 JOIDKEND_00008 6347 4 Skin 0.06 protein_coding synonymous_variant LOW 177T>C Ile59Ile
M0107594 JOIDKEND_00014 10731 3 Skin 0.05 protein_coding missense_variant MODERATE 203A>G Asn68Ser
M0107595 JOIDKEND_00015 11136 6 Skin 0.09 protein_coding synonymous_variant LOW 447T>C Gly149Gly
M0107596 JOIDKEND_00015 11181 5 Skin 0.08 protein_coding synonymous_variant LOW 402A>T Ala134Ala
M0107597 JOIDKEND_00015 11210 6 Skin 0.09 protein_coding missense_variant MODERATE 373A>G Ile125Val
M0107598 JOIDKEND_00015 11212 6 Skin 0.09 protein_coding missense_variant MODERATE 371C>G Ser124Trp
M0107599 JOIDKEND_00015 11214 6 Skin 0.09 protein_coding synonymous_variant LOW 369T>G Ala123Ala
M0107600 JOIDKEND_00015 11223 6 Skin 0.09 protein_coding missense_variant MODERATE 360G>A Met120Ile
M0107601 JOIDKEND_00015 11334 6 Skin 0.09 protein_coding synonymous_variant LOW 249C>T Asn83Asn
M0107602 JOIDKEND_00017 12429 7 Skin 0.11 protein_coding synonymous_variant LOW 3363T>C Ile1121Ile
M0107603 JOIDKEND_00017 12535 6 Skin 0.09 protein_coding missense_variant MODERATE 3257A>C Lys1086Thr
M0107604 JOIDKEND_00017 12555 4 Skin 0.06 protein_coding synonymous_variant LOW 3237C>T Asp1079Asp
M0107605 JOIDKEND_00017 12952 5 Skin 0.08 protein_coding missense_variant MODERATE 2840G>A Gly947Asp
M0107606 JOIDKEND_00008 6386 3 Skin 0.05 protein_coding synonymous_variant LOW 216A>G Val72Val
M0107607 JOIDKEND_00008 6410 3 Skin 0.05 protein_coding synonymous_variant LOW 240T>A Ser80Ser
M0107608 JOIDKEND_00008 6461 3 Skin 0.05 protein_coding synonymous_variant LOW 291C>T Arg97Arg
M0107609 JOIDKEND_00008 6524 3 Skin 0.05 protein_coding synonymous_variant LOW 354G>A Glu118Glu
M0107610 JOIDKEND_00008 6875 3 Skin 0.05 protein_coding synonymous_variant LOW 705C>A Ser235Ser
M0107611 JOIDKEND_00008 7064 3 Skin 0.05 protein_coding synonymous_variant LOW 894A>T Ile298Ile
M0107612 JOIDKEND_00008 7067 3 Skin 0.05 protein_coding synonymous_variant LOW 897T>C Ala299Ala
M0107613 JOIDKEND_00008 7279 3 Skin 0.05 protein_coding missense_variant MODERATE 1109A>G Lys370Arg
M0107614 JOIDKEND_00045 41522 3 Skin 0.05 protein_coding synonymous_variant LOW 57G>T Gly19Gly
M0107615 JOIDKEND_00034 34864 6 Skin 0.09 protein_coding synonymous_variant LOW 240C>T Asp80Asp
M0107616 JOIDKEND_00027 35937 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4989A>G None
M0107617 JOIDKEND_00030 36986 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4413T>A None
M0107618 JOIDKEND_00040 37292 5 Skin 0.08 protein_coding missense_variant MODERATE 301T>G Ser101Ala
M0107619 JOIDKEND_00012 8526 5 Skin 0.08 protein_coding synonymous_variant LOW 177T>C Asn59Asn
M0107620 JOIDKEND_00012 8631 4 Skin 0.06 protein_coding synonymous_variant LOW 72C>A Ile24Ile
M0107621 JOIDKEND_00012 8634 4 Skin 0.06 protein_coding synonymous_variant LOW 69A>C Thr23Thr
M0107622 JOIDKEND_00012 8659 4 Skin 0.06 protein_coding missense_variant MODERATE 44G>A Arg15Lys
M0107623 JOIDKEND_00007 8720 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2648C>T None
M0107624 JOIDKEND_00028 31204 6 Skin 0.09 protein_coding missense_variant MODERATE 184T>C Phe62Leu
M0107625 JOIDKEND_00028 31280 6 Skin 0.09 protein_coding synonymous_variant LOW 108T>C Asn36Asn
M0107626 JOIDKEND_00028 31281 6 Skin 0.09 protein_coding missense_variant MODERATE 107A>G Asn36Ser
M0107627 JOIDKEND_00028 31288 6 Skin 0.09 protein_coding missense_variant MODERATE 100A>T Ile34Leu
M0107628 JOIDKEND_00029 31396 7 Skin 0.11 protein_coding missense_variant MODERATE 236A>G Glu79Gly
M0107629 JOIDKEND_00025 31934 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4112A>T None
M0107630 JOIDKEND_00025 31948 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4126C>T None
M0107631 JOIDKEND_00025 31950 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4128C>A None
M0107632 JOIDKEND_00025 32023 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4201A>T None
M0107633 JOIDKEND_00030 32111 3 Skin 0.05 protein_coding missense_variant MODERATE 463G>A Asp155Asn
M0107634 JOIDKEND_00030 32154 4 Skin 0.06 protein_coding synonymous_variant LOW 420C>T Pro140Pro
M0107635 JOIDKEND_00030 32160 4 Skin 0.06 protein_coding synonymous_variant LOW 414C>T Ala138Ala
M0107636 JOIDKEND_00030 32201 3 Skin 0.05 protein_coding missense_variant MODERATE 373A>C Lys125Gln
M0107637 JOIDKEND_00030 32364 5 Skin 0.08 protein_coding synonymous_variant LOW 210A>G Ser70Ser
M0107638 JOIDKEND_00030 32366 5 Skin 0.08 protein_coding missense_variant MODERATE 208T>C Ser70Pro
M0107639 JOIDKEND_00030 32414 7 Skin 0.11 protein_coding synonymous_variant LOW 160T>C Leu54Leu
M0107640 JOIDKEND_00031 32609 5 Skin 0.08 protein_coding missense_variant MODERATE 371A>T Gln124Leu
M0107641 JOIDKEND_00031 32703 6 Skin 0.09 protein_coding missense_variant MODERATE 277T>C Ser93Pro
M0107642 JOIDKEND_00031 32722 6 Skin 0.09 protein_coding synonymous_variant LOW 258T>C Tyr86Tyr
M0107643 JOIDKEND_00026 33006 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4195T>C None
M0107644 JOIDKEND_00026 33033 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4222T>G None
M0107645 JOIDKEND_00026 33045 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4234G>A None
M0107646 JOIDKEND_00026 33048 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4237T>C None
M0107647 JOIDKEND_00026 33052 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4241T>C None
M0107648 JOIDKEND_00002 1248 3 Skin 0.05 protein_coding synonymous_variant LOW 477A>T Ile159Ile
M0107649 JOIDKEND_00003 1289 3 Skin 0.05 protein_coding synonymous_variant LOW 12A>G Leu4Leu
M0107650 JOIDKEND_00003 1617 6 Skin 0.09 protein_coding missense_variant MODERATE 340A>C Lys114Gln
M0107651 JOIDKEND_00004 2219 3 Skin 0.05 protein_coding synonymous_variant LOW 27A>G Lys9Lys
M0107652 JOIDKEND_00004 2274 4 Skin 0.06 protein_coding synonymous_variant LOW 82C>T Leu28Leu
M0107653 JOIDKEND_00004 2294 3 Skin 0.05 protein_coding missense_variant MODERATE 102A>T Glu34Asp
M0107654 JOIDKEND_00004 2359 4 Skin 0.06 protein_coding missense_variant MODERATE 167A>T Tyr56Phe
M0107655 JOIDKEND_00004 2413 4 Skin 0.06 protein_coding missense_variant MODERATE 221C>T Thr74Ile
M0107656 JOIDKEND_00004 2481 3 Skin 0.05 protein_coding missense_variant MODERATE 289C>T His97Tyr
M0107657 JOIDKEND_00005 2542 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -21G>A None
M0107658 JOIDKEND_00005 2557 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -6T>C None
M0107659 JOIDKEND_00005 2561 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2G>A None
M0107660 JOIDKEND_00005 2619 3 Skin 0.05 protein_coding missense_variant MODERATE 57C>A Asn19Lys
M0107661 JOIDKEND_00005 2637 3 Skin 0.05 protein_coding missense_variant MODERATE 75T>A Asp25Glu
M0107662 JOIDKEND_00005 2646 3 Skin 0.05 protein_coding synonymous_variant LOW 84C>T Asp28Asp
M0107663 JOIDKEND_00005 3003 4 Skin 0.06 protein_coding synonymous_variant LOW 441G>A Lys147Lys
M0107664 JOIDKEND_00005 3036 4 Skin 0.06 protein_coding synonymous_variant LOW 474C>T His158His
M0107665 JOIDKEND_00005 3057 3 Skin 0.05 protein_coding synonymous_variant LOW 495C>T Ser165Ser
M0107666 JOIDKEND_00005 3096 3 Skin 0.05 protein_coding synonymous_variant LOW 534C>T Tyr178Tyr
M0107667 JOIDKEND_00005 3120 4 Skin 0.06 protein_coding synonymous_variant LOW 558T>C Asn186Asn
M0107668 JOIDKEND_00005 3165 3 Skin 0.05 protein_coding synonymous_variant LOW 603T>C Asp201Asp
M0107669 JOIDKEND_00005 3171 3 Skin 0.05 protein_coding missense_variant MODERATE 609T>A Asp203Glu
M0107670 JOIDKEND_00005 3408 3 Skin 0.05 protein_coding synonymous_variant LOW 846C>T Asp282Asp
M0107671 JOIDKEND_00005 3411 3 Skin 0.05 protein_coding synonymous_variant LOW 849A>G Thr283Thr
M0107672 JOIDKEND_00005 3414 3 Skin 0.05 protein_coding synonymous_variant LOW 852G>A Lys284Lys
M0107673 JOIDKEND_00005 3420 3 Skin 0.05 protein_coding synonymous_variant LOW 858C>T Thr286Thr
M0107674 JOIDKEND_00005 3423 3 Skin 0.05 protein_coding synonymous_variant LOW 861T>C Ile287Ile
M0107675 JOIDKEND_00005 3441 3 Skin 0.05 protein_coding synonymous_variant LOW 879C>A Ile293Ile
M0107676 JOIDKEND_00005 3449 3 Skin 0.05 protein_coding missense_variant MODERATE 887G>A Ser296Asn
M0107677 JOIDKEND_00005 3469 3 Skin 0.05 protein_coding missense_variant MODERATE 907C>A Gln303Lys
M0107678 JOIDKEND_00049 44405 5 Skin 0.08 protein_coding synonymous_variant LOW 352C>T Leu118Leu
M0107679 JOIDKEND_00045 44524 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2946T>A None
M0107680 JOIDKEND_00051 45682 3 Skin 0.05 protein_coding missense_variant MODERATE 340A>G Lys114Glu
M0107681 JOIDKEND_00052 45746 3 Skin 0.05 protein_coding missense_variant MODERATE 1G>A Val1Met
M0107682 JOIDKEND_00048 48427 5 Skin 0.08 protein_coding downstream_gene_variant MODIFIER *4631A>C None
M0107683 JOIDKEND_00025 25978 4 Skin 0.06 protein_coding synonymous_variant LOW 1845A>G Gly615Gly
M0107684 JOIDKEND_00025 26077 5 Skin 0.08 protein_coding synonymous_variant LOW 1746G>C Thr582Thr
M0107685 JOIDKEND_00025 26080 5 Skin 0.08 protein_coding synonymous_variant LOW 1743G>A Val581Val
M0107686 JOIDKEND_00025 26086 5 Skin 0.08 protein_coding synonymous_variant LOW 1737T>C Asn579Asn
M0107687 JOIDKEND_00025 26871 6 Skin 0.09 protein_coding synonymous_variant LOW 952T>C Leu318Leu
M0107688 JOIDKEND_00025 27340 6 Skin 0.09 protein_coding synonymous_variant LOW 483C>T Asn161Asn
M0107689 JOIDKEND_00025 27448 3 Skin 0.05 protein_coding synonymous_variant LOW 375C>T Asp125Asp
M0107690 JOIDKEND_00026 27866 5 Skin 0.08 protein_coding missense_variant MODERATE 946C>A Gln316Lys
M0107691 JOIDKEND_00013 9213 8 Skin 0.12 protein_coding missense_variant MODERATE 485C>A Thr162Lys
M0107692 JOIDKEND_00013 9215 8 Skin 0.12 protein_coding synonymous_variant LOW 483T>A Val161Val
M0107693 JOIDKEND_00013 9305 9 Skin 0.14 protein_coding synonymous_variant LOW 393C>T His131His
M0107694 JOIDKEND_00013 9389 9 Skin 0.14 protein_coding synonymous_variant LOW 309T>C Asn103Asn
M0107695 JOIDKEND_00007 9703 9 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3631T>C None
M0107696 JOIDKEND_00014 9965 3 Skin 0.05 protein_coding synonymous_variant LOW 969T>G Ser323Ser
M0107697 JOIDKEND_00014 10873 3 Skin 0.05 protein_coding missense_variant MODERATE 61A>G Thr21Ala
M0107698 JOIDKEND_00014 10886 3 Skin 0.05 protein_coding synonymous_variant LOW 48T>C Gly16Gly
M0107699 JOIDKEND_00014 10895 3 Skin 0.05 protein_coding synonymous_variant LOW 39C>T Ser13Ser
M0107700 JOIDKEND_00014 10900 3 Skin 0.05 protein_coding missense_variant MODERATE 34A>G Ile12Val
M0107701 JOIDKEND_00014 10903 3 Skin 0.05 protein_coding missense_variant MODERATE 31A>G Thr11Ala
M0107702 JOIDKEND_00014 10911 3 Skin 0.05 protein_coding missense_variant MODERATE 23T>C Val8Ala
M0107703 JOIDKEND_00014 10924 3 Skin 0.05 protein_coding missense_variant MODERATE 10A>T Thr4Ser
M0107704 JOIDKEND_00015 10962 3 Skin 0.05 protein_coding synonymous_variant LOW 621G>A Arg207Arg
M0107705 JOIDKEND_00015 10977 3 Skin 0.05 protein_coding synonymous_variant LOW 606C>T Phe202Phe
M0107706 JOIDKEND_00017 15180 6 Skin 0.09 protein_coding synonymous_variant LOW 612A>G Val204Val
M0107707 JOIDKEND_00017 15309 4 Skin 0.06 protein_coding synonymous_variant LOW 483A>T Pro161Pro
M0107708 JOIDKEND_00017 15404 3 Skin 0.05 protein_coding missense_variant MODERATE 388T>G Ser130Ala
M0107709 JOIDKEND_00017 15564 4 Skin 0.06 protein_coding synonymous_variant LOW 228G>A Val76Val
M0107710 JOIDKEND_00017 15630 4 Skin 0.06 protein_coding synonymous_variant LOW 162G>A Ala54Ala
M0107711 JOIDKEND_00017 15781 3 Skin 0.05 protein_coding missense_variant MODERATE 11T>A Ile4Asn
M0107712 JOIDKEND_00014 15802 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4869A>G None
M0107713 JOIDKEND_00014 15803 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4870A>T None
M0107714 JOIDKEND_00014 15830 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4897T>C None
M0107715 JOIDKEND_00014 15849 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4916G>A None
M0107716 JOIDKEND_00014 15871 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4938G>A None
M0107717 JOIDKEND_00014 15885 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4952T>A None
M0107718 JOIDKEND_00014 15919 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4986C>T None
M0107719 JOIDKEND_00015 16113 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4531G>T None
M0107720 JOIDKEND_00015 16114 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4532A>T None
M0107721 JOIDKEND_00015 16160 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4578C>A None
M0107722 JOIDKEND_00018 16319 4 Skin 0.06 protein_coding missense_variant MODERATE 710A>G Gln237Arg
M0107723 JOIDKEND_00018 16377 4 Skin 0.06 protein_coding missense_variant MODERATE 652A>C Met218Leu
M0107724 JOIDKEND_00018 16378 4 Skin 0.06 protein_coding synonymous_variant LOW 651C>T Arg217Arg
M0107725 JOIDKEND_00018 16382 4 Skin 0.06 protein_coding missense_variant MODERATE 647C>A Ala216Glu
M0107726 JOIDKEND_00018 16393 4 Skin 0.06 protein_coding synonymous_variant LOW 636A>G Lys212Lys
M0107727 JOIDKEND_00018 16615 3 Skin 0.05 protein_coding synonymous_variant LOW 414T>C Gly138Gly
M0107728 JOIDKEND_00018 16728 6 Skin 0.09 protein_coding missense_variant MODERATE 301A>T Ile101Leu
M0107729 JOIDKEND_00018 16749 4 Skin 0.06 protein_coding missense_variant MODERATE 280G>T Val94Leu
M0107730 JOIDKEND_00018 16849 7 Skin 0.11 protein_coding synonymous_variant LOW 180A>T Ser60Ser
M0107731 JOIDKEND_00018 16885 4 Skin 0.06 protein_coding synonymous_variant LOW 144T>C Tyr48Tyr
M0107732 JOIDKEND_00018 16888 7 Skin 0.11 protein_coding synonymous_variant LOW 141C>G Thr47Thr
M0107733 JOIDKEND_00018 16951 6 Skin 0.09 protein_coding synonymous_variant LOW 78G>T Leu26Leu
M0107734 JOIDKEND_00018 16968 6 Skin 0.09 protein_coding missense_variant MODERATE 61A>G Thr21Ala
M0107735 JOIDKEND_00018 17013 8 Skin 0.12 protein_coding missense_variant MODERATE 16A>G Lys6Glu
M0107736 JOIDKEND_00017 17048 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1257A>G None
M0107737 JOIDKEND_00019 17104 6 Skin 0.09 protein_coding synonymous_variant LOW 657G>A Glu219Glu
M0107738 JOIDKEND_00019 17122 4 Skin 0.06 protein_coding synonymous_variant LOW 639C>T Phe213Phe
M0107739 JOIDKEND_00019 17501 5 Skin 0.08 protein_coding missense_variant MODERATE 260G>A Ser87Asn
M0107740 JOIDKEND_00019 17515 5 Skin 0.08 protein_coding synonymous_variant LOW 246G>A Ser82Ser
M0107741 JOIDKEND_00019 17538 3 Skin 0.05 protein_coding missense_variant MODERATE 223G>A Glu75Lys
M0107742 JOIDKEND_00019 17550 3 Skin 0.05 protein_coding missense_variant MODERATE 211A>G Lys71Glu
M0107743 JOIDKEND_00020 18109 3 Skin 0.05 protein_coding synonymous_variant LOW 780T>C Leu260Leu
M0107744 JOIDKEND_00020 18121 4 Skin 0.06 protein_coding synonymous_variant LOW 768G>A Leu256Leu
M0107745 JOIDKEND_00021 19011 4 Skin 0.06 protein_coding synonymous_variant LOW 1836A>G Glu612Glu
M0107746 JOIDKEND_00024 23550 3 Skin 0.05 protein_coding synonymous_variant LOW 1725A>G Gln575Gln
M0107747 JOIDKEND_00024 23555 3 Skin 0.05 protein_coding missense_variant MODERATE 1720A>G Lys574Glu
M0107748 JOIDKEND_00024 23556 3 Skin 0.05 protein_coding synonymous_variant LOW 1719T>C Asn573Asn
M0107749 JOIDKEND_00024 23565 3 Skin 0.05 protein_coding synonymous_variant LOW 1710A>G Thr570Thr
M0107750 JOIDKEND_00024 23568 3 Skin 0.05 protein_coding synonymous_variant LOW 1707G>A Ser569Ser
M0107751 JOIDKEND_00024 23592 3 Skin 0.05 protein_coding synonymous_variant LOW 1683G>C Ser561Ser
M0107752 JOIDKEND_00024 23640 4 Skin 0.06 protein_coding missense_variant MODERATE 1635C>A Asp545Glu
M0107753 JOIDKEND_00024 23673 4 Skin 0.06 protein_coding synonymous_variant LOW 1602A>G Glu534Glu
M0107754 JOIDKEND_00024 23679 4 Skin 0.06 protein_coding missense_variant MODERATE 1596T>G Phe532Leu
M0107755 JOIDKEND_00024 23688 4 Skin 0.06 protein_coding synonymous_variant LOW 1587C>T Ile529Ile
M0107756 JOIDKEND_00024 23700 4 Skin 0.06 protein_coding synonymous_variant LOW 1575A>C Ser525Ser
M0107757 JOIDKEND_00024 23709 4 Skin 0.06 protein_coding synonymous_variant LOW 1566C>T Asp522Asp
M0107758 JOIDKEND_00024 23717 4 Skin 0.06 protein_coding missense_variant MODERATE 1558T>A Ser520Thr
M0107759 JOIDKEND_00024 23718 4 Skin 0.06 protein_coding synonymous_variant LOW 1557A>T Gly519Gly
M0107760 JOIDKEND_00024 23721 4 Skin 0.06 protein_coding synonymous_variant LOW 1554G>T Gly518Gly
M0107761 JOIDKEND_00024 23746 4 Skin 0.06 protein_coding missense_variant MODERATE 1529G>A Ser510Asn
M0107762 JOIDKEND_00024 23763 4 Skin 0.06 protein_coding synonymous_variant LOW 1512G>T Thr504Thr
M0107763 JOIDKEND_00024 23774 3 Skin 0.05 protein_coding missense_variant MODERATE 1501A>G Thr501Ala
M0107764 JOIDKEND_00024 23781 4 Skin 0.06 protein_coding synonymous_variant LOW 1494T>A Ala498Ala
M0107765 JOIDKEND_00024 23796 4 Skin 0.06 protein_coding synonymous_variant LOW 1479G>T Gly493Gly
M0107766 JOIDKEND_00024 23877 4 Skin 0.06 protein_coding synonymous_variant LOW 1398A>G Thr466Thr
M0107767 JOIDKEND_00024 23920 4 Skin 0.06 protein_coding missense_variant MODERATE 1355C>G Ala452Gly
M0107768 JOIDKEND_00024 23931 4 Skin 0.06 protein_coding synonymous_variant LOW 1344C>T Val448Val
M0107769 JOIDKEND_00024 23934 4 Skin 0.06 protein_coding synonymous_variant LOW 1341T>A Gly447Gly
M0107770 JOIDKEND_00024 23958 4 Skin 0.06 protein_coding synonymous_variant LOW 1317C>T Val439Val
M0107771 JOIDKEND_00024 23961 4 Skin 0.06 protein_coding synonymous_variant LOW 1314C>T Ser438Ser
M0107772 JOIDKEND_00024 23963 4 Skin 0.06 protein_coding missense_variant MODERATE 1312T>G Ser438Ala
M0107773 JOIDKEND_00024 23967 4 Skin 0.06 protein_coding synonymous_variant LOW 1308A>T Val436Val
M0107774 JOIDKEND_00024 23996 3 Skin 0.05 protein_coding missense_variant MODERATE 1279A>G Ile427Val
M0107775 JOIDKEND_00024 24021 4 Skin 0.06 protein_coding synonymous_variant LOW 1254T>C Asn418Asn
M0107776 JOIDKEND_00024 24036 4 Skin 0.06 protein_coding synonymous_variant LOW 1239T>C Ser413Ser
M0107777 JOIDKEND_00024 24045 4 Skin 0.06 protein_coding synonymous_variant LOW 1230T>C Ser410Ser
M0107778 JOIDKEND_00024 24072 4 Skin 0.06 protein_coding synonymous_variant LOW 1203T>C Asp401Asp
M0107779 JOIDKEND_00024 24075 4 Skin 0.06 protein_coding synonymous_variant LOW 1200G>A Thr400Thr
M0107780 JOIDKEND_00024 24150 3 Skin 0.05 protein_coding missense_variant MODERATE 1125T>G Phe375Leu
M0107781 JOIDKEND_00024 24159 3 Skin 0.05 protein_coding synonymous_variant LOW 1116A>G Val372Val
M0107782 JOIDKEND_00024 24164 3 Skin 0.05 protein_coding missense_variant MODERATE 1111G>A Val371Ile
M0107783 JOIDKEND_00024 24171 4 Skin 0.06 protein_coding synonymous_variant LOW 1104A>G Gly368Gly
M0107784 JOIDKEND_00024 24177 4 Skin 0.06 protein_coding synonymous_variant LOW 1098T>C Leu366Leu
M0107785 JOIDKEND_00024 24222 4 Skin 0.06 protein_coding synonymous_variant LOW 1053T>C Tyr351Tyr
M0107786 JOIDKEND_00024 24234 4 Skin 0.06 protein_coding synonymous_variant LOW 1041T>C Phe347Phe
M0107787 JOIDKEND_00024 24243 4 Skin 0.06 protein_coding synonymous_variant LOW 1032T>A Val344Val
M0107788 JOIDKEND_00024 24411 4 Skin 0.06 protein_coding missense_variant MODERATE 864A>C Glu288Asp
M0107789 JOIDKEND_00024 24485 3 Skin 0.05 protein_coding missense_variant MODERATE 790A>G Thr264Ala
M0107790 JOIDKEND_00024 24514 3 Skin 0.05 protein_coding missense_variant MODERATE 761G>A Arg254Lys
M0107791 JOIDKEND_00024 24543 3 Skin 0.05 protein_coding synonymous_variant LOW 732C>T Gly244Gly
M0107792 JOIDKEND_00024 24639 3 Skin 0.05 protein_coding synonymous_variant LOW 636A>G Leu212Leu
M0107793 JOIDKEND_00024 24902 3 Skin 0.05 protein_coding missense_variant MODERATE 373T>C Phe125Leu
M0107794 JOIDKEND_00025 25379 5 Skin 0.08 protein_coding missense_variant MODERATE 2444T>A Phe815Tyr
M0107795 JOIDKEND_00025 25468 3 Skin 0.05 protein_coding synonymous_variant LOW 2355A>G Arg785Arg
M0107796 JOIDKEND_00025 26428 4 Skin 0.06 protein_coding synonymous_variant LOW 1395C>T Asn465Asn
M0107797 JOIDKEND_00025 26790 4 Skin 0.06 protein_coding synonymous_variant LOW 1033C>T Leu345Leu
M0107798 JOIDKEND_00025 26791 4 Skin 0.06 protein_coding synonymous_variant LOW 1032T>A Ala344Ala
M0107799 JOIDKEND_00025 27154 3 Skin 0.05 protein_coding synonymous_variant LOW 669A>T Arg223Arg
M0107800 JOIDKEND_00025 27195 4 Skin 0.06 protein_coding missense_variant MODERATE 628A>T Thr210Ser
M0107801 JOIDKEND_00025 27529 5 Skin 0.08 protein_coding synonymous_variant LOW 294A>G Leu98Leu
M0107802 JOIDKEND_00021 19767 3 Skin 0.05 protein_coding synonymous_variant LOW 1080A>G Glu360Glu
M0107803 JOIDKEND_00021 20175 3 Skin 0.05 protein_coding synonymous_variant LOW 672A>G Glu224Glu
M0107804 JOIDKEND_00021 20199 3 Skin 0.05 protein_coding synonymous_variant LOW 648T>G Gly216Gly
M0107805 JOIDKEND_00021 20418 3 Skin 0.05 protein_coding synonymous_variant LOW 429G>C Arg143Arg
M0107806 JOIDKEND_00021 20751 3 Skin 0.05 protein_coding synonymous_variant LOW 96G>A Ser32Ser
M0107807 JOIDKEND_00021 20757 3 Skin 0.05 protein_coding synonymous_variant LOW 90C>T Ser30Ser
M0107808 JOIDKEND_00021 20823 3 Skin 0.05 protein_coding synonymous_variant LOW 24G>A Lys8Lys
M0107809 JOIDKEND_00022 20972 3 Skin 0.05 protein_coding missense_variant MODERATE 513A>T Glu171Asp
M0107810 JOIDKEND_00022 21031 3 Skin 0.05 protein_coding missense_variant MODERATE 454G>A Glu152Lys
M0107811 JOIDKEND_00022 21126 3 Skin 0.05 protein_coding missense_variant MODERATE 359A>G Lys120Arg
M0107812 JOIDKEND_00022 21416 3 Skin 0.05 protein_coding synonymous_variant LOW 69G>A Gly23Gly
M0107813 JOIDKEND_00027 28873 5 Skin 0.08 protein_coding synonymous_variant LOW 2076T>C Asn692Asn
M0107814 JOIDKEND_00027 28984 6 Skin 0.09 protein_coding synonymous_variant LOW 1965A>G Lys655Lys
M0107815 JOIDKEND_00027 30013 7 Skin 0.11 protein_coding synonymous_variant LOW 936C>T Asn312Asn
M0107816 JOIDKEND_00027 30022 7 Skin 0.11 protein_coding synonymous_variant LOW 927G>C Arg309Arg
M0107817 JOIDKEND_00027 30103 7 Skin 0.11 protein_coding synonymous_variant LOW 846A>C Pro282Pro
M0107818 JOIDKEND_00027 30204 5 Skin 0.08 protein_coding missense_variant MODERATE 745G>A Asp249Asn
M0107819 JOIDKEND_00027 30277 5 Skin 0.08 protein_coding synonymous_variant LOW 672A>G Glu224Glu
M0107820 JOIDKEND_00027 30409 7 Skin 0.11 protein_coding missense_variant MODERATE 540A>C Glu180Asp
M0107821 JOIDKEND_00028 31120 4 Skin 0.06 protein_coding missense_variant MODERATE 268T>A Leu90Met
M0107822 JOIDKEND_00028 31126 4 Skin 0.06 protein_coding missense_variant MODERATE 262A>G Ile88Val
M0107823 JOIDKEND_00028 31144 4 Skin 0.06 protein_coding missense_variant MODERATE 244G>T Ala82Ser
M0107824 JOIDKEND_00028 31166 4 Skin 0.06 protein_coding missense_variant MODERATE 222A>T Lys74Asn
M0107825 JOIDKEND_00028 31167 4 Skin 0.06 protein_coding missense_variant MODERATE 221A>C Lys74Thr
M0107826 JOIDKEND_00028 31195 4 Skin 0.06 protein_coding missense_variant MODERATE 193A>G Ile65Val
M0107827 JOIDKEND_00028 31221 4 Skin 0.06 protein_coding missense_variant MODERATE 167C>G Ala56Gly
M0107828 JOIDKEND_00028 31239 4 Skin 0.06 protein_coding missense_variant MODERATE 149C>T Pro50Leu
M0107829 JOIDKEND_00028 31240 4 Skin 0.06 protein_coding missense_variant MODERATE 148C>G Pro50Ala
M0107830 JOIDKEND_00028 31264 4 Skin 0.06 protein_coding missense_variant MODERATE 124G>T Val42Leu
M0107831 JOIDKEND_00028 31278 4 Skin 0.06 protein_coding missense_variant MODERATE 110C>T Thr37Met
M0107832 JOIDKEND_00028 31292 4 Skin 0.06 protein_coding missense_variant MODERATE 96C>A Asn32Lys
M0107833 JOIDKEND_00028 31293 4 Skin 0.06 protein_coding missense_variant MODERATE 95A>C Asn32Thr
M0107834 JOIDKEND_00032 33295 4 Skin 0.06 protein_coding missense_variant MODERATE 21A>T Lys7Asn
M0107835 JOIDKEND_00033 33358 4 Skin 0.06 protein_coding missense_variant MODERATE 972A>C Lys324Asn
M0107836 JOIDKEND_00033 33634 5 Skin 0.08 protein_coding synonymous_variant LOW 696A>G Leu232Leu
M0107837 JOIDKEND_00033 33693 5 Skin 0.08 protein_coding missense_variant MODERATE 637A>G Asn213Asp
M0107838 JOIDKEND_00012 8664 3 Skin 0.05 protein_coding synonymous_variant LOW 39C>T Asn13Asn
M0107839 JOIDKEND_00012 8667 3 Skin 0.05 protein_coding synonymous_variant LOW 36A>T Gly12Gly
M0107840 JOIDKEND_00012 8698 3 Skin 0.05 protein_coding missense_variant MODERATE 5T>A Ile2Asn
M0107841 JOIDKEND_00013 9077 3 Skin 0.05 protein_coding synonymous_variant LOW 621G>T Arg207Arg
M0107842 JOIDKEND_00013 9167 7 Skin 0.11 protein_coding synonymous_variant LOW 531C>A Thr177Thr
M0107843 JOIDKEND_00013 9168 7 Skin 0.11 protein_coding missense_variant MODERATE 530C>A Thr177Asn
M0107844 JOIDKEND_00014 10333 4 Skin 0.06 protein_coding missense_variant MODERATE 601G>A Ala201Thr
M0107845 JOIDKEND_00017 13944 3 Skin 0.05 protein_coding synonymous_variant LOW 1848A>G Thr616Thr
M0107846 JOIDKEND_00017 13977 3 Skin 0.05 protein_coding synonymous_variant LOW 1815G>A Lys605Lys
M0107847 JOIDKEND_00017 14691 3 Skin 0.05 protein_coding synonymous_variant LOW 1101C>T Tyr367Tyr
M0107848 JOIDKEND_00017 14727 3 Skin 0.05 protein_coding synonymous_variant LOW 1065G>A Thr355Thr
M0107849 JOIDKEND_00017 14946 3 Skin 0.05 protein_coding synonymous_variant LOW 846A>C Thr282Thr
M0107850 JOIDKEND_00020 17806 3 Skin 0.05 protein_coding synonymous_variant LOW 1083T>C Phe361Phe
M0107851 JOIDKEND_00020 17878 3 Skin 0.05 protein_coding synonymous_variant LOW 1011C>T Ser337Ser
M0107852 JOIDKEND_00020 18259 3 Skin 0.05 protein_coding synonymous_variant LOW 630C>T Ile210Ile
M0107853 JOIDKEND_00034 34898 5 Skin 0.08 protein_coding missense_variant MODERATE 274G>A Val92Ile
M0107854 JOIDKEND_00034 35035 7 Skin 0.11 protein_coding synonymous_variant LOW 411C>T Tyr137Tyr
M0107855 JOIDKEND_00034 35359 7 Skin 0.11 protein_coding missense_variant MODERATE 735A>T Lys245Asn
M0107856 JOIDKEND_00027 35520 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4572G>C None
M0107857 JOIDKEND_00027 35539 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4591A>G None
M0107858 JOIDKEND_00027 35554 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4606G>A None
M0107859 JOIDKEND_00027 35556 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4608G>A None
M0107860 JOIDKEND_00027 35565 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4617C>T None
M0107861 JOIDKEND_00027 35596 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4648A>G None
M0107862 JOIDKEND_00027 35604 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4656T>A None
M0107863 JOIDKEND_00028 35950 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4563A>T None
M0107864 JOIDKEND_00036 36028 3 Skin 0.05 protein_coding missense_variant MODERATE 33A>T Lys11Asn
M0107865 JOIDKEND_00028 36282 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4895C>A None
M0107866 JOIDKEND_00027 29071 4 Skin 0.06 protein_coding missense_variant MODERATE 1878C>A Asp626Glu
M0107867 JOIDKEND_00027 29074 4 Skin 0.06 protein_coding synonymous_variant LOW 1875A>G Lys625Lys
M0107868 JOIDKEND_00027 29085 4 Skin 0.06 protein_coding missense_variant MODERATE 1864G>A Asp622Asn
M0107869 JOIDKEND_00027 29094 4 Skin 0.06 protein_coding missense_variant MODERATE 1855T>G Phe619Val
M0107870 JOIDKEND_00027 29149 4 Skin 0.06 protein_coding synonymous_variant LOW 1800G>A Glu600Glu
M0107871 JOIDKEND_00027 29212 5 Skin 0.08 protein_coding synonymous_variant LOW 1737T>C Arg579Arg
M0107872 JOIDKEND_00027 29231 6 Skin 0.09 protein_coding missense_variant MODERATE 1718T>C Met573Thr
M0107873 JOIDKEND_00027 29233 6 Skin 0.09 protein_coding synonymous_variant LOW 1716G>A Lys572Lys
M0107874 JOIDKEND_00027 29234 6 Skin 0.09 protein_coding missense_variant MODERATE 1715A>G Lys572Arg
M0107875 JOIDKEND_00027 29257 6 Skin 0.09 protein_coding synonymous_variant LOW 1692T>A Ser564Ser
M0107876 JOIDKEND_00027 29306 6 Skin 0.09 protein_coding missense_variant MODERATE 1643A>G Lys548Arg
M0107877 JOIDKEND_00027 29320 6 Skin 0.09 protein_coding synonymous_variant LOW 1629A>G Glu543Glu
M0107878 JOIDKEND_00027 29324 6 Skin 0.09 protein_coding missense_variant MODERATE 1625A>G Gln542Arg
M0107879 JOIDKEND_00027 29344 5 Skin 0.08 protein_coding synonymous_variant LOW 1605A>G Ala535Ala
M0107880 JOIDKEND_00027 29355 6 Skin 0.09 protein_coding missense_variant MODERATE 1594A>G Lys532Glu
M0107881 JOIDKEND_00027 29448 6 Skin 0.09 protein_coding missense_variant MODERATE 1501A>G Thr501Ala
M0107882 JOIDKEND_00027 29524 6 Skin 0.09 protein_coding synonymous_variant LOW 1425A>G Gln475Gln
M0107883 JOIDKEND_00027 29530 6 Skin 0.09 protein_coding synonymous_variant LOW 1419C>T Cys473Cys
M0107884 JOIDKEND_00027 29538 6 Skin 0.09 protein_coding missense_variant MODERATE 1411G>C Glu471Gln
M0107885 JOIDKEND_00027 29571 6 Skin 0.09 protein_coding missense_variant MODERATE 1378A>T Thr460Ser
M0107886 JOIDKEND_00027 29617 6 Skin 0.09 protein_coding missense_variant MODERATE 1332A>C Glu444Asp
M0107887 JOIDKEND_00027 29623 6 Skin 0.09 protein_coding missense_variant MODERATE 1326G>A Met442Ile
M0107888 JOIDKEND_00027 29642 6 Skin 0.09 protein_coding missense_variant MODERATE 1307C>A Ser436Tyr
M0107889 JOIDKEND_00027 29656 6 Skin 0.09 protein_coding synonymous_variant LOW 1293A>G Arg431Arg
M0107890 JOIDKEND_00027 29685 4 Skin 0.06 protein_coding missense_variant MODERATE 1264A>G Asn422Asp
M0107891 JOIDKEND_00027 29689 6 Skin 0.09 protein_coding synonymous_variant LOW 1260A>G Lys420Lys
M0107892 JOIDKEND_00027 29705 6 Skin 0.09 protein_coding missense_variant MODERATE 1244G>T Ser415Ile
M0107893 JOIDKEND_00027 29716 6 Skin 0.09 protein_coding synonymous_variant LOW 1233G>A Gln411Gln
M0107894 JOIDKEND_00027 29749 6 Skin 0.09 protein_coding synonymous_variant LOW 1200A>G Glu400Glu
M0107895 JOIDKEND_00027 29830 3 Skin 0.05 protein_coding synonymous_variant LOW 1119T>C Asp373Asp
M0107896 JOIDKEND_00027 30031 3 Skin 0.05 protein_coding synonymous_variant LOW 918T>A Ile306Ile
M0107897 JOIDKEND_00027 30862 3 Skin 0.05 protein_coding synonymous_variant LOW 87C>T Asn29Asn
M0107898 JOIDKEND_00025 31068 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3246C>A None
M0107899 JOIDKEND_00028 31098 3 Skin 0.05 protein_coding missense_variant MODERATE 290A>G Asn97Ser
M0107900 JOIDKEND_00014 10001 5 Skin 0.08 protein_coding synonymous_variant LOW 933C>T Asn311Asn
M0107901 JOIDKEND_00014 10019 5 Skin 0.08 protein_coding missense_variant MODERATE 915A>T Arg305Ser
M0107902 JOIDKEND_00014 10344 3 Skin 0.05 protein_coding missense_variant MODERATE 590C>A Thr197Asn
M0107903 JOIDKEND_00014 10809 4 Skin 0.06 protein_coding missense_variant MODERATE 125C>A Ala42Glu
M0107904 JOIDKEND_00033 33997 4 Skin 0.06 protein_coding synonymous_variant LOW 333C>T Val111Val
M0107905 JOIDKEND_00033 33999 7 Skin 0.11 protein_coding missense_variant MODERATE 331G>A Val111Ile
M0107906 JOIDKEND_00034 34691 4 Skin 0.06 protein_coding missense_variant MODERATE 67A>G Lys23Glu
M0107907 JOIDKEND_00034 34704 3 Skin 0.05 protein_coding missense_variant MODERATE 80G>T Gly27Val
M0107908 JOIDKEND_00034 34708 4 Skin 0.06 protein_coding synonymous_variant LOW 84T>C Asn28Asn
M0107909 JOIDKEND_00034 34738 4 Skin 0.06 protein_coding synonymous_variant LOW 114G>A Lys38Lys
M0107910 JOIDKEND_00027 29241 3 Skin 0.05 protein_coding missense_variant MODERATE 1708A>T Met570Leu
M0107911 JOIDKEND_00027 30446 3 Skin 0.05 protein_coding missense_variant MODERATE 503C>T Ala168Val
M0107912 JOIDKEND_00033 34174 3 Skin 0.05 protein_coding synonymous_variant LOW 156T>C Asn52Asn
M0107913 JOIDKEND_00033 34240 7 Skin 0.11 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0107914 JOIDKEND_00027 34390 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3442G>A None
M0107915 JOIDKEND_00027 34394 5 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3446C>T None
M0107916 JOIDKEND_00027 34448 7 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3500A>C None
M0107917 JOIDKEND_00027 34476 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3528G>T None
M0107918 JOIDKEND_00027 34509 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3561C>A None
M0107919 JOIDKEND_00027 34619 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3671C>A None
M0107920 JOIDKEND_00027 34620 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3672G>A None
M0107921 JOIDKEND_00034 34649 3 Skin 0.05 protein_coding missense_variant MODERATE 25A>G Ile9Val
M0107922 JOIDKEND_00034 34849 4 Skin 0.06 protein_coding synonymous_variant LOW 225C>T Ile75Ile
M0107923 JOIDKEND_00034 35272 6 Skin 0.09 protein_coding synonymous_variant LOW 648C>A Thr216Thr
M0107924 JOIDKEND_00034 35278 4 Skin 0.06 protein_coding synonymous_variant LOW 654G>A Lys218Lys
M0107925 JOIDKEND_00034 35340 4 Skin 0.06 protein_coding missense_variant MODERATE 716T>C Val239Ala
M0107926 JOIDKEND_00027 34522 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3574T>C None
M0107927 JOIDKEND_00033 34037 3 Skin 0.05 protein_coding missense_variant MODERATE 293C>T Thr98Ile
M0107928 JOIDKEND_00033 34198 4 Skin 0.06 protein_coding synonymous_variant LOW 132A>G Arg44Arg
M0107929 JOIDKEND_00033 34300 3 Skin 0.05 protein_coding synonymous_variant LOW 30T>C Ala10Ala
M0107930 JOIDKEND_00005 3780 3 Skin 0.05 protein_coding synonymous_variant LOW 1218C>T Gly406Gly
M0107931 JOIDKEND_00005 3881 3 Skin 0.05 protein_coding missense_variant MODERATE 1319T>C Ile440Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JOIDKEND_00020 UZX48003.1|GH0 100 3.9e-264 1 369 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term