Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1096
  Reference Plasmid   NZ_CP110787.1
  Reference Plasmid Size   7369
  Reference Plasmid GC Content   0.31
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0195962 MGGGPKFC_00002 2158 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -840A>T None
M0195963 MGGGPKFC_00004 2492 4 Gut 1.00 protein_coding synonymous_variant LOW 264G>C Ala88Ala
M0195964 MGGGPKFC_00005 3482 4 Gut 1.00 protein_coding synonymous_variant LOW 693C>T Asn231Asn
M0195965 MGGGPKFC_00005 3529 4 Gut 1.00 protein_coding missense_variant MODERATE 740A>G Lys247Arg
M0195966 MGGGPKFC_00005 3672 4 Gut 1.00 protein_coding synonymous_variant LOW 883A>C Arg295Arg
M0195967 MGGGPKFC_00002 4618 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3300G>T None
M0195968 MGGGPKFC_00002 4619 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3301A>T None
M0195969 MGGGPKFC_00002 4820 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3502G>A None
M0195970 MGGGPKFC_00006 5512 4 Gut 1.00 protein_coding synonymous_variant LOW 522T>C Tyr174Tyr
M0195971 MGGGPKFC_00004 2499 3 Gut 0.75 protein_coding missense_variant MODERATE 271A>G Ile91Val
M0195972 MGGGPKFC_00005 3699 3 Gut 0.75 protein_coding missense_variant MODERATE 910G>A Ala304Thr
M0195973 MGGGPKFC_00002 3806 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2488G>C None
M0195974 MGGGPKFC_00002 4176 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2858A>G None
M0195975 MGGGPKFC_00002 4183 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2865G>A None
M0195976 MGGGPKFC_00002 4188 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2870G>A None
M0195977 MGGGPKFC_00002 4189 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2871A>G None
M0195978 MGGGPKFC_00002 4194 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2876G>T None
M0195979 MGGGPKFC_00002 4195 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2877G>A None
M0195980 MGGGPKFC_00002 4197 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2879C>T None
M0195981 MGGGPKFC_00002 4206 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2888A>G None
M0195982 MGGGPKFC_00002 4233 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2915A>G None
M0195983 MGGGPKFC_00002 4292 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2974A>G None
M0195984 MGGGPKFC_00002 4718 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3400C>G None
M0195985 MGGGPKFC_00002 4798 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3480G>A None
M0195986 MGGGPKFC_00002 4947 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3629T>A None
M0195987 MGGGPKFC_00006 5092 3 Gut 0.75 protein_coding synonymous_variant LOW 102G>A Lys34Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term