Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1100
  Reference Plasmid   NZ_CP114268.1
  Reference Plasmid Size   10120
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0107934 PKMCLAIJ_00001 3586 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2780A>G None
M0107935 PKMCLAIJ_00001 3616 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2810G>A None
M0107936 PKMCLAIJ_00001 3619 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2813T>G None
M0107937 PKMCLAIJ_00001 3624 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2818G>A None
M0107938 PKMCLAIJ_00001 3632 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2826T>G None
M0107939 PKMCLAIJ_00001 3640 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2834T>G None
M0107940 PKMCLAIJ_00001 3644 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2838A>G None
M0107941 PKMCLAIJ_00001 3645 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2839T>C None
M0107942 PKMCLAIJ_00001 3649 10 Skin 0.91 protein_coding upstream_gene_variant MODIFIER -2843C>T None
M0107943 PKMCLAIJ_00004 3679 11 Skin 1.00 protein_coding synonymous_variant LOW 15T>C Ser5Ser
M0107944 PKMCLAIJ_00004 3696 11 Skin 1.00 protein_coding missense_variant MODERATE 32T>C Ile11Thr
M0107945 PKMCLAIJ_00004 3734 11 Skin 1.00 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0107946 PKMCLAIJ_00004 3799 11 Skin 1.00 protein_coding synonymous_variant LOW 135A>G Glu45Glu
M0107947 PKMCLAIJ_00004 3904 11 Skin 1.00 protein_coding synonymous_variant LOW 240T>C Ala80Ala
M0107948 PKMCLAIJ_00004 3928 11 Skin 1.00 protein_coding synonymous_variant LOW 264C>T Ile88Ile
M0107949 PKMCLAIJ_00001 4036 11 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -3230C>T None
M0107950 PKMCLAIJ_00005 4166 11 Skin 1.00 protein_coding synonymous_variant LOW 63T>C Leu21Leu
M0107951 PKMCLAIJ_00005 4217 11 Skin 1.00 protein_coding synonymous_variant LOW 114A>C Pro38Pro
M0107952 PKMCLAIJ_00005 4259 11 Skin 1.00 protein_coding synonymous_variant LOW 156G>A Lys52Lys
M0107953 PKMCLAIJ_00005 4265 11 Skin 1.00 protein_coding synonymous_variant LOW 162T>C Ala54Ala
M0107954 PKMCLAIJ_00005 4376 10 Skin 0.91 protein_coding synonymous_variant LOW 273G>A Leu91Leu
M0107955 PKMCLAIJ_00005 4432 10 Skin 0.91 protein_coding missense_variant MODERATE 329A>G Glu110Gly
M0107956 PKMCLAIJ_00005 4447 10 Skin 0.91 protein_coding missense_variant MODERATE 344T>A Leu115Gln
M0107957 PKMCLAIJ_00005 4461 10 Skin 0.91 protein_coding missense_variant MODERATE 358G>A Glu120Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term