Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1102
  Reference Plasmid   NZ_CP115286.1
  Reference Plasmid Size   282569
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0108035 KDALFEGB_00351 253618 5 Skin 0.11 protein_coding synonymous_variant LOW 96T>C Thr32Thr
M0108036 KDALFEGB_00356 257366 6 Skin 0.14 protein_coding synonymous_variant LOW 1809T>C Gly603Gly
M0108037 KDALFEGB_00054 22770 12 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1292T>C None
M0108038 KDALFEGB_00054 22778 6 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1300A>C None
M0108039 KDALFEGB_00057 23360 5 Skin 0.11 protein_coding synonymous_variant LOW 510G>C Pro170Pro
M0108040 KDALFEGB_00057 23372 5 Skin 0.11 protein_coding synonymous_variant LOW 522G>T Leu174Leu
M0108041 KDALFEGB_00058 24448 15 Skin 0.34 protein_coding synonymous_variant LOW 774G>A Lys258Lys
M0108042 KDALFEGB_00059 24795 16 Skin 0.36 protein_coding synonymous_variant LOW 249C>G Pro83Pro
M0108043 KDALFEGB_00059 24807 16 Skin 0.36 protein_coding synonymous_variant LOW 261C>G Thr87Thr
M0108044 KDALFEGB_00059 24808 16 Skin 0.36 protein_coding synonymous_variant LOW 262T>C Leu88Leu
M0108045 KDALFEGB_00059 24828 16 Skin 0.36 protein_coding synonymous_variant LOW 282T>C Gly94Gly
M0108046 KDALFEGB_00060 25562 7 Skin 0.16 protein_coding missense_variant MODERATE 180C>A Asp60Glu
M0108047 KDALFEGB_00060 25568 7 Skin 0.16 protein_coding synonymous_variant LOW 186T>C Leu62Leu
M0108048 KDALFEGB_00060 25580 7 Skin 0.16 protein_coding synonymous_variant LOW 198T>C Pro66Pro
M0108049 KDALFEGB_00060 25592 7 Skin 0.16 protein_coding synonymous_variant LOW 210A>G Val70Val
M0108050 KDALFEGB_00060 25954 10 Skin 0.23 protein_coding missense_variant MODERATE 572G>A Arg191Gln
M0108051 KDALFEGB_00060 26024 6 Skin 0.14 protein_coding synonymous_variant LOW 642C>T Thr214Thr
M0108052 KDALFEGB_00060 26025 6 Skin 0.14 protein_coding missense_variant MODERATE 643C>G Gln215Glu
M0108053 KDALFEGB_00061 26569 7 Skin 0.16 protein_coding synonymous_variant LOW 183G>T Arg61Arg
M0108054 KDALFEGB_00061 26691 13 Skin 0.30 protein_coding missense_variant MODERATE 305T>A Leu102Gln
M0108055 KDALFEGB_00356 257169 7 Skin 0.16 protein_coding missense_variant MODERATE 1612G>A Ala538Thr
M0108056 KDALFEGB_00058 24028 9 Skin 0.20 protein_coding synonymous_variant LOW 354G>A Ser118Ser
M0108057 KDALFEGB_00058 24125 6 Skin 0.14 protein_coding synonymous_variant LOW 451T>C Leu151Leu
M0108058 KDALFEGB_00058 24137 6 Skin 0.14 protein_coding missense_variant MODERATE 463G>A Ala155Thr
M0108059 KDALFEGB_00058 24159 7 Skin 0.16 protein_coding missense_variant MODERATE 485G>A Gly162Asp
M0108060 KDALFEGB_00058 24160 7 Skin 0.16 protein_coding synonymous_variant LOW 486T>G Gly162Gly
M0108061 KDALFEGB_00058 24161 7 Skin 0.16 protein_coding synonymous_variant LOW 487T>C Leu163Leu
M0108062 KDALFEGB_00058 24235 7 Skin 0.16 protein_coding synonymous_variant LOW 561C>A Gly187Gly
M0108063 KDALFEGB_00058 24277 5 Skin 0.11 protein_coding missense_variant MODERATE 603C>A His201Gln
M0108064 KDALFEGB_00058 24279 5 Skin 0.11 protein_coding missense_variant MODERATE 605C>T Ala202Val
M0108065 KDALFEGB_00058 24282 5 Skin 0.11 protein_coding missense_variant MODERATE 608T>C Val203Ala
M0108066 KDALFEGB_00058 24340 7 Skin 0.16 protein_coding synonymous_variant LOW 666C>T Tyr222Tyr
M0108067 KDALFEGB_00058 24346 7 Skin 0.16 protein_coding synonymous_variant LOW 672G>A Gln224Gln
M0108068 KDALFEGB_00058 24493 15 Skin 0.34 protein_coding synonymous_variant LOW 819C>T Ile273Ile
M0108069 KDALFEGB_00059 25158 8 Skin 0.18 protein_coding synonymous_variant LOW 612G>T Thr204Thr
M0108070 KDALFEGB_00059 25161 3 Skin 0.07 protein_coding synonymous_variant LOW 615G>A Pro205Pro
M0108071 KDALFEGB_00061 26641 7 Skin 0.16 protein_coding synonymous_variant LOW 255C>A Gly85Gly
M0108072 KDALFEGB_00061 26645 7 Skin 0.16 protein_coding missense_variant MODERATE 259C>A Arg87Ser
M0108073 KDALFEGB_00061 26706 7 Skin 0.16 protein_coding missense_variant MODERATE 320A>G Asn107Ser
M0108074 KDALFEGB_00054 22743 6 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1265A>G None
M0108075 KDALFEGB_00054 22762 6 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1284G>T None
M0108076 KDALFEGB_00057 22910 3 Skin 0.07 protein_coding synonymous_variant LOW 60T>C Tyr20Tyr
M0108077 KDALFEGB_00059 24559 7 Skin 0.16 protein_coding missense_variant MODERATE 13T>C Tyr5His
M0108078 KDALFEGB_00059 24561 7 Skin 0.16 protein_coding synonymous_variant LOW 15C>T Tyr5Tyr
M0108079 KDALFEGB_00059 24648 5 Skin 0.11 protein_coding synonymous_variant LOW 102G>A Ala34Ala
M0108080 KDALFEGB_00059 24655 5 Skin 0.11 protein_coding missense_variant MODERATE 109T>C Phe37Leu
M0108081 KDALFEGB_00059 24696 4 Skin 0.09 protein_coding synonymous_variant LOW 150C>G Leu50Leu
M0108082 KDALFEGB_00356 255666 4 Skin 0.09 protein_coding missense_variant MODERATE 109A>G Thr37Ala
M0108083 KDALFEGB_00057 23063 4 Skin 0.09 protein_coding synonymous_variant LOW 213A>G Glu71Glu
M0108084 KDALFEGB_00057 23072 5 Skin 0.11 protein_coding synonymous_variant LOW 222A>G Glu74Glu
M0108085 KDALFEGB_00060 25742 5 Skin 0.11 protein_coding synonymous_variant LOW 360G>C Arg120Arg
M0108086 KDALFEGB_00060 25770 5 Skin 0.11 protein_coding missense_variant MODERATE 388A>G Lys130Glu
M0108087 KDALFEGB_00060 25820 6 Skin 0.14 protein_coding synonymous_variant LOW 438T>G Ala146Ala
M0108088 KDALFEGB_00060 25855 6 Skin 0.14 protein_coding missense_variant MODERATE 473T>A Leu158Gln
M0108089 KDALFEGB_00060 25868 7 Skin 0.16 protein_coding missense_variant MODERATE 486T>G Asp162Glu
M0108090 KDALFEGB_00061 26901 4 Skin 0.09 protein_coding missense_variant MODERATE 515C>T Ala172Val
M0108091 KDALFEGB_00060 25485 5 Skin 0.11 protein_coding missense_variant MODERATE 103C>A Pro35Thr
M0108092 KDALFEGB_00061 26872 4 Skin 0.09 protein_coding synonymous_variant LOW 486G>A Val162Val
M0108093 KDALFEGB_00061 26894 4 Skin 0.09 protein_coding missense_variant MODERATE 508G>C Ala170Pro
M0108094 KDALFEGB_00061 26923 4 Skin 0.09 protein_coding synonymous_variant LOW 537T>C Arg179Arg
M0108095 KDALFEGB_00061 27004 3 Skin 0.07 protein_coding synonymous_variant LOW 618A>G Glu206Glu
M0108096 KDALFEGB_00061 27190 3 Skin 0.07 protein_coding synonymous_variant LOW 804T>G Pro268Pro
M0108097 KDALFEGB_00356 258434 3 Skin 0.07 protein_coding stop_gained HIGH 2877C>G Tyr959*
M0108098 KDALFEGB_00057 23621 6 Skin 0.14 protein_coding synonymous_variant LOW 771G>A Ala257Ala
M0108099 KDALFEGB_00057 23623 6 Skin 0.14 protein_coding missense_variant MODERATE 773A>C Asn258Thr
M0108100 KDALFEGB_00057 23637 6 Skin 0.14 protein_coding missense_variant MODERATE 787C>A Pro263Thr
M0108101 KDALFEGB_00057 23639 6 Skin 0.14 protein_coding synonymous_variant LOW 789A>C Pro263Pro
M0108102 KDALFEGB_00057 23653 6 Skin 0.14 protein_coding missense_variant MODERATE 803A>C Glu268Ala
M0108103 KDALFEGB_00058 23692 6 Skin 0.14 protein_coding synonymous_variant LOW 18G>T Ala6Ala
M0108104 KDALFEGB_00058 23704 6 Skin 0.14 protein_coding synonymous_variant LOW 30T>C Thr10Thr
M0108105 KDALFEGB_00058 23707 6 Skin 0.14 protein_coding synonymous_variant LOW 33C>T Cys11Cys
M0108106 KDALFEGB_00058 23729 6 Skin 0.14 protein_coding synonymous_variant LOW 55T>C Leu19Leu
M0108107 KDALFEGB_00058 23738 6 Skin 0.14 protein_coding missense_variant MODERATE 64C>G Leu22Val
M0108108 KDALFEGB_00058 23776 6 Skin 0.14 protein_coding synonymous_variant LOW 102C>G Ala34Ala
M0108109 KDALFEGB_00058 23800 7 Skin 0.16 protein_coding synonymous_variant LOW 126C>G Ser42Ser
M0108110 KDALFEGB_00058 23804 6 Skin 0.14 protein_coding synonymous_variant LOW 130C>T Leu44Leu
M0108111 KDALFEGB_00058 23815 6 Skin 0.14 protein_coding synonymous_variant LOW 141T>A Arg47Arg
M0108112 KDALFEGB_00060 26370 4 Skin 0.09 protein_coding missense_variant MODERATE 988A>C Lys330Gln
M0108113 KDALFEGB_00356 257045 3 Skin 0.07 protein_coding synonymous_variant LOW 1488C>T Asp496Asp
M0108114 KDALFEGB_00059 25030 3 Skin 0.07 protein_coding missense_variant MODERATE 484G>A Val162Ile
M0108115 KDALFEGB_00054 22657 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1179G>A None
M0108116 KDALFEGB_00060 25471 4 Skin 0.09 protein_coding missense_variant MODERATE 89C>G Thr30Ser
M0108117 KDALFEGB_00057 23018 3 Skin 0.07 protein_coding synonymous_variant LOW 168T>C Ser56Ser
M0108118 KDALFEGB_00057 23043 3 Skin 0.07 protein_coding missense_variant MODERATE 193G>C Gly65Arg
M0108119 KDALFEGB_00054 20660 3 Skin 0.07 protein_coding synonymous_variant LOW 819T>C Ser273Ser
M0108120 KDALFEGB_00054 20681 3 Skin 0.07 protein_coding synonymous_variant LOW 798A>G Lys266Lys
M0108121 KDALFEGB_00054 20884 3 Skin 0.07 protein_coding missense_variant MODERATE 595C>A Leu199Ile
M0108122 KDALFEGB_00054 21023 3 Skin 0.07 protein_coding synonymous_variant LOW 456G>A Gly152Gly
M0108123 KDALFEGB_00054 21224 3 Skin 0.07 protein_coding synonymous_variant LOW 255G>T Thr85Thr
M0108124 KDALFEGB_00054 21411 3 Skin 0.07 protein_coding missense_variant MODERATE 68A>G Gln23Arg
M0108125 KDALFEGB_00055 21565 3 Skin 0.07 protein_coding synonymous_variant LOW 51T>C Ala17Ala
M0108126 KDALFEGB_00056 21998 3 Skin 0.07 protein_coding synonymous_variant LOW 511T>C Leu171Leu
M0108127 KDALFEGB_00056 22007 3 Skin 0.07 protein_coding stop_gained HIGH 502A>T Lys168*
M0108128 KDALFEGB_00056 22022 3 Skin 0.07 protein_coding missense_variant MODERATE 487C>T Pro163Ser
M0108129 KDALFEGB_00056 22043 3 Skin 0.07 protein_coding stop_gained HIGH 466C>T Gln156*






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term