Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1108
  Reference Plasmid   NZ_CP116109.1
  Reference Plasmid Size   118588
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0196021 DLIDCLFC_00090 77797 4 Gut 1.00 protein_coding missense_variant MODERATE 530A>C Asp177Ala
M0196022 DLIDCLFC_00090 77798 4 Gut 1.00 protein_coding missense_variant MODERATE 529G>A Asp177Asn
M0196023 DLIDCLFC_00090 77814 4 Gut 1.00 protein_coding synonymous_variant LOW 513C>T Phe171Phe
M0196024 DLIDCLFC_00090 78162 4 Gut 1.00 protein_coding synonymous_variant LOW 165A>G Arg55Arg
M0196025 DLIDCLFC_00090 78186 4 Gut 1.00 protein_coding synonymous_variant LOW 141C>T His47His
M0196026 DLIDCLFC_00090 78246 4 Gut 1.00 protein_coding synonymous_variant LOW 81A>G Gly27Gly
M0196027 DLIDCLFC_00091 78729 4 Gut 1.00 protein_coding missense_variant MODERATE 829A>G Asn277Asp
M0196028 DLIDCLFC_00091 78895 4 Gut 1.00 protein_coding synonymous_variant LOW 663T>G Thr221Thr
M0196029 DLIDCLFC_00091 78934 4 Gut 1.00 protein_coding synonymous_variant LOW 624G>A Ala208Ala
M0196030 DLIDCLFC_00091 79387 4 Gut 1.00 protein_coding synonymous_variant LOW 171A>C Thr57Thr
M0196031 DLIDCLFC_00091 79516 4 Gut 1.00 protein_coding synonymous_variant LOW 42T>G Leu14Leu
M0196032 DLIDCLFC_00092 79823 4 Gut 1.00 protein_coding missense_variant MODERATE 316A>G Thr106Ala
M0196033 DLIDCLFC_00092 80091 4 Gut 1.00 protein_coding synonymous_variant LOW 48A>G Gly16Gly
M0196034 DLIDCLFC_00093 80996 4 Gut 1.00 protein_coding synonymous_variant LOW 2187G>T Ala729Ala
M0196035 DLIDCLFC_00093 81404 4 Gut 1.00 protein_coding synonymous_variant LOW 1779G>T Ser593Ser
M0196036 DLIDCLFC_00093 81641 4 Gut 1.00 protein_coding synonymous_variant LOW 1542A>G Thr514Thr
M0196037 DLIDCLFC_00093 81686 4 Gut 1.00 protein_coding synonymous_variant LOW 1497C>G Leu499Leu
M0196038 DLIDCLFC_00093 81733 4 Gut 1.00 protein_coding missense_variant MODERATE 1450A>T Ile484Phe
M0196039 DLIDCLFC_00093 82060 4 Gut 1.00 protein_coding missense_variant MODERATE 1123G>A Ala375Thr
M0196040 DLIDCLFC_00093 82285 4 Gut 1.00 protein_coding synonymous_variant LOW 898T>C Leu300Leu
M0196041 DLIDCLFC_00094 83810 4 Gut 1.00 protein_coding missense_variant MODERATE 263C>T Ala88Val
M0196042 DLIDCLFC_00096 84325 4 Gut 1.00 protein_coding missense_variant MODERATE 388T>A Ser130Thr
M0196043 DLIDCLFC_00096 84337 4 Gut 1.00 protein_coding synonymous_variant LOW 376T>C Leu126Leu
M0196044 DLIDCLFC_00096 84382 4 Gut 1.00 protein_coding missense_variant MODERATE 331G>C Val111Leu
M0196045 DLIDCLFC_00096 84403 4 Gut 1.00 protein_coding missense_variant MODERATE 310G>C Val104Leu
M0196046 DLIDCLFC_00096 84412 4 Gut 1.00 protein_coding missense_variant MODERATE 301A>G Ser101Gly
M0196047 DLIDCLFC_00096 84452 4 Gut 1.00 protein_coding synonymous_variant LOW 261C>G Gly87Gly
M0196048 DLIDCLFC_00097 84895 4 Gut 1.00 protein_coding synonymous_variant LOW 396C>T Leu132Leu
M0196049 DLIDCLFC_00098 85566 4 Gut 1.00 protein_coding synonymous_variant LOW 429A>G Thr143Thr
M0196050 DLIDCLFC_00098 85662 4 Gut 1.00 protein_coding synonymous_variant LOW 333C>G Arg111Arg
M0196051 DLIDCLFC_00098 85767 4 Gut 1.00 protein_coding synonymous_variant LOW 228A>C Thr76Thr
M0196052 DLIDCLFC_00098 85811 4 Gut 1.00 protein_coding missense_variant MODERATE 184C>T Pro62Ser
M0196053 DLIDCLFC_00099 86138 4 Gut 1.00 protein_coding synonymous_variant LOW 1146A>C Ser382Ser
M0196054 DLIDCLFC_00099 86486 4 Gut 1.00 protein_coding synonymous_variant LOW 798T>A Ala266Ala
M0196055 DLIDCLFC_00099 86636 4 Gut 1.00 protein_coding synonymous_variant LOW 648A>G Pro216Pro
M0196056 DLIDCLFC_00099 86687 4 Gut 1.00 protein_coding synonymous_variant LOW 597T>C Ala199Ala
M0196057 DLIDCLFC_00099 86806 4 Gut 1.00 protein_coding missense_variant MODERATE 478A>G Thr160Ala
M0196058 DLIDCLFC_00099 86885 4 Gut 1.00 protein_coding synonymous_variant LOW 399A>G Lys133Lys
M0196059 DLIDCLFC_00099 86979 4 Gut 1.00 protein_coding missense_variant MODERATE 305A>C Gln102Pro
M0196060 DLIDCLFC_00099 87089 4 Gut 1.00 protein_coding synonymous_variant LOW 195C>T His65His
M0196061 DLIDCLFC_00100 87312 4 Gut 1.00 protein_coding missense_variant MODERATE 958A>G Ile320Val
M0196062 DLIDCLFC_00100 87358 4 Gut 1.00 protein_coding synonymous_variant LOW 912A>G Lys304Lys
M0196063 DLIDCLFC_00100 87382 4 Gut 1.00 protein_coding synonymous_variant LOW 888T>C Ser296Ser
M0196064 DLIDCLFC_00100 87529 4 Gut 1.00 protein_coding synonymous_variant LOW 741G>T Leu247Leu
M0196065 DLIDCLFC_00100 87565 4 Gut 1.00 protein_coding synonymous_variant LOW 705G>A Lys235Lys
M0196066 DLIDCLFC_00100 87589 4 Gut 1.00 protein_coding synonymous_variant LOW 681A>G Pro227Pro
M0196067 DLIDCLFC_00100 87615 4 Gut 1.00 protein_coding missense_variant MODERATE 655A>C Ile219Leu
M0196068 DLIDCLFC_00100 87643 4 Gut 1.00 protein_coding synonymous_variant LOW 627A>G Gln209Gln
M0196069 DLIDCLFC_00100 87727 4 Gut 1.00 protein_coding synonymous_variant LOW 543T>C Asn181Asn
M0196070 DLIDCLFC_00100 87773 4 Gut 1.00 protein_coding missense_variant MODERATE 497A>G Glu166Gly
M0196071 DLIDCLFC_00100 88018 4 Gut 1.00 protein_coding synonymous_variant LOW 252G>A Glu84Glu
M0196072 DLIDCLFC_00100 88045 4 Gut 1.00 protein_coding synonymous_variant LOW 225G>A Arg75Arg
M0196073 DLIDCLFC_00100 88141 4 Gut 1.00 protein_coding synonymous_variant LOW 129C>T Asn43Asn
M0196074 DLIDCLFC_00101 88469 4 Gut 1.00 protein_coding synonymous_variant LOW 504A>G Gln168Gln
M0196075 DLIDCLFC_00101 88578 4 Gut 1.00 protein_coding missense_variant MODERATE 395T>C Val132Ala
M0196076 DLIDCLFC_00101 88961 4 Gut 1.00 protein_coding synonymous_variant LOW 12T>C Asn4Asn
M0196077 DLIDCLFC_00102 89230 4 Gut 1.00 protein_coding synonymous_variant LOW 87C>T Ser29Ser
M0196078 DLIDCLFC_00103 89463 4 Gut 1.00 protein_coding synonymous_variant LOW 3639A>G Lys1213Lys
M0196079 DLIDCLFC_00103 89538 4 Gut 1.00 protein_coding synonymous_variant LOW 3564T>C Pro1188Pro
M0196080 DLIDCLFC_00103 89643 4 Gut 1.00 protein_coding synonymous_variant LOW 3459A>G Ser1153Ser
M0196081 DLIDCLFC_00103 89736 4 Gut 1.00 protein_coding synonymous_variant LOW 3366A>G Glu1122Glu
M0196082 DLIDCLFC_00103 90207 4 Gut 1.00 protein_coding synonymous_variant LOW 2895G>A Glu965Glu
M0196083 DLIDCLFC_00103 90300 4 Gut 1.00 protein_coding synonymous_variant LOW 2802C>T Asp934Asp
M0196084 DLIDCLFC_00103 90301 4 Gut 1.00 protein_coding missense_variant MODERATE 2801A>G Asp934Gly
M0196085 DLIDCLFC_00103 90309 4 Gut 1.00 protein_coding synonymous_variant LOW 2793G>A Val931Val
M0196086 DLIDCLFC_00103 90310 4 Gut 1.00 protein_coding missense_variant MODERATE 2792T>C Val931Ala
M0196087 DLIDCLFC_00103 90335 4 Gut 1.00 protein_coding missense_variant MODERATE 2767G>A Ala923Thr
M0196088 DLIDCLFC_00103 90344 4 Gut 1.00 protein_coding missense_variant MODERATE 2758C>T Pro920Ser
M0196089 DLIDCLFC_00103 90350 4 Gut 1.00 protein_coding missense_variant MODERATE 2752T>C Ser918Pro
M0196090 DLIDCLFC_00103 90351 4 Gut 1.00 protein_coding synonymous_variant LOW 2751C>T Ala917Ala
M0196091 DLIDCLFC_00103 90371 4 Gut 1.00 protein_coding missense_variant MODERATE 2731G>T Ala911Ser
M0196092 DLIDCLFC_00103 90377 4 Gut 1.00 protein_coding missense_variant MODERATE 2725C>A Pro909Thr
M0196093 DLIDCLFC_00103 90381 4 Gut 1.00 protein_coding synonymous_variant LOW 2721A>T Val907Val
M0196094 DLIDCLFC_00103 90382 4 Gut 1.00 protein_coding missense_variant MODERATE 2720T>C Val907Ala
M0196095 DLIDCLFC_00103 90384 4 Gut 1.00 protein_coding synonymous_variant LOW 2718A>T Pro906Pro
M0196096 DLIDCLFC_00103 90438 4 Gut 1.00 protein_coding synonymous_variant LOW 2664G>A Pro888Pro
M0196097 DLIDCLFC_00103 90447 4 Gut 1.00 protein_coding synonymous_variant LOW 2655A>T Pro885Pro
M0196098 DLIDCLFC_00103 90451 4 Gut 1.00 protein_coding missense_variant MODERATE 2651C>T Thr884Ile
M0196099 DLIDCLFC_00103 90492 4 Gut 1.00 protein_coding synonymous_variant LOW 2610A>T Ala870Ala
M0196100 DLIDCLFC_00103 91105 4 Gut 1.00 protein_coding missense_variant MODERATE 1997C>A Pro666His
M0196101 DLIDCLFC_00103 91146 4 Gut 1.00 protein_coding synonymous_variant LOW 1956G>A Leu652Leu
M0196102 DLIDCLFC_00103 91236 4 Gut 1.00 protein_coding synonymous_variant LOW 1866G>A Glu622Glu
M0196103 DLIDCLFC_00103 91299 4 Gut 1.00 protein_coding synonymous_variant LOW 1803C>T Ser601Ser
M0196104 DLIDCLFC_00103 91385 4 Gut 1.00 protein_coding missense_variant MODERATE 1717G>A Ala573Thr
M0196105 DLIDCLFC_00103 91585 4 Gut 1.00 protein_coding missense_variant MODERATE 1517C>T Pro506Leu
M0196106 DLIDCLFC_00103 91617 4 Gut 1.00 protein_coding synonymous_variant LOW 1485G>A Pro495Pro
M0196107 DLIDCLFC_00103 91643 4 Gut 1.00 protein_coding missense_variant MODERATE 1459T>G Ser487Ala
M0196108 DLIDCLFC_00103 91736 4 Gut 1.00 protein_coding missense_variant MODERATE 1366T>C Ser456Pro
M0196109 DLIDCLFC_00103 91738 4 Gut 1.00 protein_coding missense_variant MODERATE 1364T>A Leu455Gln
M0196110 DLIDCLFC_00103 91760 4 Gut 1.00 protein_coding missense_variant MODERATE 1342A>G Ser448Gly
M0196111 DLIDCLFC_00103 91772 4 Gut 1.00 protein_coding missense_variant MODERATE 1330A>G Thr444Ala
M0196112 DLIDCLFC_00103 91773 4 Gut 1.00 protein_coding synonymous_variant LOW 1329A>T Pro443Pro
M0196113 DLIDCLFC_00103 91791 4 Gut 1.00 protein_coding synonymous_variant LOW 1311T>C Ala437Ala
M0196114 DLIDCLFC_00103 91996 4 Gut 1.00 protein_coding missense_variant MODERATE 1106A>T Gln369Leu
M0196115 DLIDCLFC_00103 92022 4 Gut 1.00 protein_coding synonymous_variant LOW 1080C>T Asp360Asp
M0196116 DLIDCLFC_00103 92046 4 Gut 1.00 protein_coding synonymous_variant LOW 1056A>G Gly352Gly
M0196117 DLIDCLFC_00103 92205 4 Gut 1.00 protein_coding missense_variant MODERATE 897T>G Asp299Glu
M0196118 DLIDCLFC_00103 92213 4 Gut 1.00 protein_coding missense_variant MODERATE 889T>G Ser297Ala
M0196119 DLIDCLFC_00103 92217 4 Gut 1.00 protein_coding synonymous_variant LOW 885C>T Ala295Ala
M0196120 DLIDCLFC_00103 92218 4 Gut 1.00 protein_coding missense_variant MODERATE 884C>T Ala295Val
M0196121 DLIDCLFC_00103 92219 4 Gut 1.00 protein_coding missense_variant MODERATE 883G>A Ala295Thr
M0196122 DLIDCLFC_00103 92250 4 Gut 1.00 protein_coding synonymous_variant LOW 852G>A Val284Val
M0196123 DLIDCLFC_00103 92262 4 Gut 1.00 protein_coding synonymous_variant LOW 840C>A Thr280Thr
M0196124 DLIDCLFC_00103 92292 4 Gut 1.00 protein_coding synonymous_variant LOW 810T>C Tyr270Tyr
M0196125 DLIDCLFC_00103 92310 4 Gut 1.00 protein_coding synonymous_variant LOW 792G>A Val264Val
M0196126 DLIDCLFC_00103 92331 4 Gut 1.00 protein_coding synonymous_variant LOW 771A>G Thr257Thr
M0196127 DLIDCLFC_00103 92334 4 Gut 1.00 protein_coding synonymous_variant LOW 768T>C Gly256Gly
M0196128 DLIDCLFC_00103 92444 4 Gut 1.00 protein_coding missense_variant MODERATE 658C>A Arg220Ser
M0196129 DLIDCLFC_00103 92457 4 Gut 1.00 protein_coding synonymous_variant LOW 645C>T Leu215Leu
M0196130 DLIDCLFC_00103 92502 4 Gut 1.00 protein_coding synonymous_variant LOW 600C>A Gly200Gly
M0196131 DLIDCLFC_00103 92548 4 Gut 1.00 protein_coding missense_variant MODERATE 554A>G Asn185Ser
M0196132 DLIDCLFC_00103 92568 4 Gut 1.00 protein_coding synonymous_variant LOW 534T>C Ala178Ala
M0196133 DLIDCLFC_00103 92607 4 Gut 1.00 protein_coding synonymous_variant LOW 495T>G Ala165Ala
M0196134 DLIDCLFC_00103 92613 4 Gut 1.00 protein_coding synonymous_variant LOW 489G>A Glu163Glu
M0196135 DLIDCLFC_00103 92627 4 Gut 1.00 protein_coding missense_variant MODERATE 475C>A Leu159Met
M0196136 DLIDCLFC_00103 92649 4 Gut 1.00 protein_coding synonymous_variant LOW 453G>A Arg151Arg
M0196137 DLIDCLFC_00103 92685 4 Gut 1.00 protein_coding synonymous_variant LOW 417C>T Thr139Thr
M0196138 DLIDCLFC_00103 92692 4 Gut 1.00 protein_coding missense_variant MODERATE 410A>C Asn137Thr
M0196139 DLIDCLFC_00103 92706 4 Gut 1.00 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0196140 DLIDCLFC_00103 92709 4 Gut 1.00 protein_coding synonymous_variant LOW 393G>A Ala131Ala
M0196141 DLIDCLFC_00103 92718 4 Gut 1.00 protein_coding synonymous_variant LOW 384T>C Tyr128Tyr
M0196142 DLIDCLFC_00103 92781 4 Gut 1.00 protein_coding synonymous_variant LOW 321G>A Gly107Gly
M0196143 DLIDCLFC_00103 92784 4 Gut 1.00 protein_coding missense_variant MODERATE 318C>A Asn106Lys
M0196144 DLIDCLFC_00103 92794 4 Gut 1.00 protein_coding missense_variant MODERATE 308A>G Asp103Gly
M0196145 DLIDCLFC_00103 92805 4 Gut 1.00 protein_coding synonymous_variant LOW 297T>C Val99Val
M0196146 DLIDCLFC_00103 92808 4 Gut 1.00 protein_coding synonymous_variant LOW 294G>T Arg98Arg
M0196147 DLIDCLFC_00103 92820 4 Gut 1.00 protein_coding synonymous_variant LOW 282T>G Gly94Gly
M0196148 DLIDCLFC_00103 92830 4 Gut 1.00 protein_coding missense_variant MODERATE 272C>T Ala91Val
M0196149 DLIDCLFC_00103 92853 4 Gut 1.00 protein_coding synonymous_variant LOW 249A>G Gly83Gly
M0196150 DLIDCLFC_00103 92892 4 Gut 1.00 protein_coding synonymous_variant LOW 210T>C Asp70Asp
M0196151 DLIDCLFC_00103 92922 4 Gut 1.00 protein_coding synonymous_variant LOW 180A>G Arg60Arg
M0196152 DLIDCLFC_00103 92937 4 Gut 1.00 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0196153 DLIDCLFC_00103 92988 4 Gut 1.00 protein_coding synonymous_variant LOW 114A>G Lys38Lys
M0196154 DLIDCLFC_00103 92991 4 Gut 1.00 protein_coding synonymous_variant LOW 111T>C Asp37Asp
M0196155 DLIDCLFC_00103 93000 4 Gut 1.00 protein_coding synonymous_variant LOW 102C>T Val34Val
M0196156 DLIDCLFC_00103 93048 4 Gut 1.00 protein_coding synonymous_variant LOW 54A>C Ile18Ile
M0196157 DLIDCLFC_00103 93084 4 Gut 1.00 protein_coding synonymous_variant LOW 18C>A Arg6Arg
M0196158 DLIDCLFC_00100 93146 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4877C>T None
M0196159 DLIDCLFC_00100 93173 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4904A>G None
M0196160 DLIDCLFC_00104 93272 4 Gut 1.00 protein_coding synonymous_variant LOW 471T>C Leu157Leu
M0196161 DLIDCLFC_00104 93387 4 Gut 1.00 protein_coding missense_variant MODERATE 356C>T Ala119Val
M0196162 DLIDCLFC_00104 93401 4 Gut 1.00 protein_coding synonymous_variant LOW 342C>G Leu114Leu
M0196163 DLIDCLFC_00104 93441 4 Gut 1.00 protein_coding missense_variant MODERATE 302A>G Gln101Arg
M0196164 DLIDCLFC_00104 93491 4 Gut 1.00 protein_coding synonymous_variant LOW 252G>T Val84Val
M0196165 DLIDCLFC_00104 93545 4 Gut 1.00 protein_coding synonymous_variant LOW 198C>T Ser66Ser
M0196166 DLIDCLFC_00105 93848 4 Gut 1.00 protein_coding missense_variant MODERATE 200A>T Tyr67Phe
M0196167 DLIDCLFC_00105 93856 4 Gut 1.00 protein_coding synonymous_variant LOW 192T>A Thr64Thr
M0196168 DLIDCLFC_00105 93865 4 Gut 1.00 protein_coding synonymous_variant LOW 183G>T Thr61Thr
M0196169 DLIDCLFC_00106 94191 4 Gut 1.00 protein_coding synonymous_variant LOW 1002A>G Pro334Pro
M0196170 DLIDCLFC_00106 94419 4 Gut 1.00 protein_coding synonymous_variant LOW 774A>G Gly258Gly
M0196171 DLIDCLFC_00106 94773 4 Gut 1.00 protein_coding synonymous_variant LOW 420T>C Ile140Ile
M0196172 DLIDCLFC_00106 94815 4 Gut 1.00 protein_coding synonymous_variant LOW 378C>A Ile126Ile
M0196173 DLIDCLFC_00106 94899 4 Gut 1.00 protein_coding synonymous_variant LOW 294G>T Gly98Gly
M0196174 DLIDCLFC_00106 95004 4 Gut 1.00 protein_coding synonymous_variant LOW 189C>T Leu63Leu
M0196175 DLIDCLFC_00106 95076 4 Gut 1.00 protein_coding synonymous_variant LOW 117C>T Gly39Gly
M0196176 DLIDCLFC_00106 95145 4 Gut 1.00 protein_coding synonymous_variant LOW 48T>G Thr16Thr
M0196177 DLIDCLFC_00107 95627 4 Gut 1.00 protein_coding synonymous_variant LOW 381A>G Arg127Arg
M0196178 DLIDCLFC_00107 95768 4 Gut 1.00 protein_coding synonymous_variant LOW 240G>A Ala80Ala
M0196179 DLIDCLFC_00107 95834 4 Gut 1.00 protein_coding synonymous_variant LOW 174A>C Thr58Thr
M0196180 DLIDCLFC_00107 95986 4 Gut 1.00 protein_coding missense_variant MODERATE 22C>A Leu8Ile
M0196181 DLIDCLFC_00108 96307 4 Gut 1.00 protein_coding synonymous_variant LOW 156A>G Val52Val
M0196182 DLIDCLFC_00110 97755 4 Gut 1.00 protein_coding missense_variant MODERATE 949A>G Ile317Val
M0196183 DLIDCLFC_00110 97810 4 Gut 1.00 protein_coding synonymous_variant LOW 894G>A Pro298Pro
M0196184 DLIDCLFC_00110 97963 4 Gut 1.00 protein_coding synonymous_variant LOW 741C>T Tyr247Tyr
M0196185 DLIDCLFC_00110 98590 4 Gut 1.00 protein_coding synonymous_variant LOW 114T>C Gly38Gly
M0196186 DLIDCLFC_00111 98952 4 Gut 1.00 protein_coding missense_variant MODERATE 661C>A Leu221Ile
M0196187 DLIDCLFC_00111 98989 4 Gut 1.00 protein_coding synonymous_variant LOW 624C>T Gly208Gly
M0196188 DLIDCLFC_00111 99026 4 Gut 1.00 protein_coding missense_variant MODERATE 587G>A Cys196Tyr
M0196189 DLIDCLFC_00111 99043 4 Gut 1.00 protein_coding synonymous_variant LOW 570T>C Asn190Asn
M0196190 DLIDCLFC_00111 99098 4 Gut 1.00 protein_coding missense_variant MODERATE 515G>A Ser172Asn
M0196191 DLIDCLFC_00111 99364 4 Gut 1.00 protein_coding synonymous_variant LOW 249A>G Gly83Gly
M0196192 DLIDCLFC_00111 99369 4 Gut 1.00 protein_coding missense_variant MODERATE 244A>G Thr82Ala
M0196193 DLIDCLFC_00112 99996 4 Gut 1.00 protein_coding missense_variant MODERATE 922G>A Asp308Asn
M0196194 DLIDCLFC_00112 100072 4 Gut 1.00 protein_coding synonymous_variant LOW 846G>A Lys282Lys
M0196195 DLIDCLFC_00112 100567 4 Gut 1.00 protein_coding synonymous_variant LOW 351G>C Ser117Ser
M0196196 DLIDCLFC_00108 101462 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -5000A>T None
M0196197 DLIDCLFC_00109 101469 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4031G>T None
M0196198 DLIDCLFC_00109 101566 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4128A>G None
M0196199 DLIDCLFC_00110 102548 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3845G>A None
M0196200 DLIDCLFC_00114 104202 4 Gut 1.00 protein_coding missense_variant MODERATE 430C>A Arg144Ser
M0196201 DLIDCLFC_00120 109254 4 Gut 1.00 protein_coding synonymous_variant LOW 973T>C Leu325Leu
M0196202 DLIDCLFC_00124 113980 3 Gut 0.75 protein_coding missense_variant MODERATE 64T>A Ser22Thr
M0196203 DLIDCLFC_00125 114287 3 Gut 0.75 protein_coding missense_variant MODERATE 259G>A Glu87Lys
M0196204 DLIDCLFC_00125 114370 3 Gut 0.75 protein_coding missense_variant MODERATE 176A>G Asn59Ser
M0196205 DLIDCLFC_00128 116304 3 Gut 0.75 protein_coding missense_variant MODERATE 70A>G Lys24Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
DLIDCLFC_00015 ARO:3002790 100 1.11e-111 1 218 1.0000 1.0000 fluoroquinolone antibiotic quinolone resistance protein (qnr) antibiotic target protection
DLIDCLFC_00024 ARO:3002705 99.8 5.62e-276 1 404 1.0000 1.0000 phenicol antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
DLIDCLFC_00027 ARO:3000165 99.7 8.54e-286 1 399 1.0000 0.9410 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
DLIDCLFC_00030 ARO:3002660 99.6 1.07e-205 1 278 1.0000 1.0000 aminoglycoside antibiotic APH(6) antibiotic inactivation
DLIDCLFC_00031 ARO:3002639 99.6 5.98e-202 1 267 1.0000 1.0000 aminoglycoside antibiotic APH(3'') antibiotic inactivation
DLIDCLFC_00032 ARO:3000412 100 4.11e-186 1 271 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DLIDCLFC_00115 AHF22950.1|GH23 100 5.89e-138 1 186 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
DLIDCLFC_00024 2.A.1.2.110 98.3 4.5e-214 1 404 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DLIDCLFC_00027 2.A.1.2.4 100 3.9e-218 1 390 0.9774 0.9774 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DLIDCLFC_00080 3.A.7.10.1 99.5 0 1 763 1.0000 7.9479 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00081 3.A.7.10.1 99.2 1e-206 1 356 1.0000 3.7083 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00082 3.A.7.10.1 99.5 1.7e-242 1 402 1.0000 4.1875 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00083 1.E.53.1.10 88.4 5.3e-16 8 50 0.8600 1.0000 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family
DLIDCLFC_00089 9.B.40.1.2 85.9 0 1 722 1.0000 0.9691 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.40 The DotA/TraY (DotA/TraY) Family
DLIDCLFC_00100 3.A.7.10.1 99.4 1.8e-184 1 327 1.0000 3.4063 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00101 3.A.7.10.1 99.1 7.4e-129 1 230 1.0000 2.3958 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00102 3.A.7.10.1 100 1.3e-57 1 115 1.0000 1.1979 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00105 3.A.7.10.1 97.9 1.3e-55 1 96 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00106 3.A.7.10.1 100 3.3e-222 1 382 1.0000 3.9792 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00107 3.A.7.10.1 100 5.6e-160 1 272 1.0000 2.8333 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
DLIDCLFC_00108 3.A.7.10.1 100 6e-87 1 152 1.0000 1.5833 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family