Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1113
  Reference Plasmid   NZ_CP116750.1
  Reference Plasmid Size   66865
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0196225 DCGIJPMF_00035 26182 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -467T>C None
M0196226 DCGIJPMF_00037 26259 3 Gut 0.30 protein_coding synonymous_variant LOW 42T>G Gly14Gly
M0196227 DCGIJPMF_00035 28506 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -2791T>C None
M0196228 DCGIJPMF_00039 28756 3 Gut 0.30 protein_coding missense_variant MODERATE 503C>T Ala168Val
M0196229 DCGIJPMF_00039 28803 3 Gut 0.30 protein_coding synonymous_variant LOW 456A>G Leu152Leu
M0196230 DCGIJPMF_00039 29165 3 Gut 0.30 protein_coding missense_variant MODERATE 94G>A Val32Ile
M0196231 DCGIJPMF_00064 50069 3 Gut 0.30 protein_coding synonymous_variant LOW 183A>G Leu61Leu
M0196232 DCGIJPMF_00064 50153 3 Gut 0.30 protein_coding synonymous_variant LOW 99C>T Gly33Gly
M0196233 DCGIJPMF_00081 62130 3 Gut 0.30 protein_coding missense_variant MODERATE 323A>G His108Arg
M0196234 DCGIJPMF_00082 63264 3 Gut 0.30 protein_coding synonymous_variant LOW 783A>G Ser261Ser
M0196235 DCGIJPMF_00082 63725 3 Gut 0.30 protein_coding missense_variant MODERATE 322A>G Ser108Gly
M0196236 DCGIJPMF_00082 64025 3 Gut 0.30 protein_coding missense_variant MODERATE 22C>A His8Asn
M0196237 DCGIJPMF_00084 64771 3 Gut 0.30 protein_coding missense_variant MODERATE 247T>C Phe83Leu
M0196238 DCGIJPMF_00084 65072 3 Gut 0.30 protein_coding missense_variant MODERATE 548C>A Ala183Asp
M0196239 DCGIJPMF_00084 65103 3 Gut 0.30 protein_coding synonymous_variant LOW 579T>C Ile193Ile
M0196240 DCGIJPMF_00084 65109 3 Gut 0.30 protein_coding missense_variant MODERATE 585G>A Met195Ile
M0196241 DCGIJPMF_00085 65693 3 Gut 0.30 protein_coding synonymous_variant LOW 66A>C Val22Val
M0196242 DCGIJPMF_00085 66122 3 Gut 0.30 protein_coding synonymous_variant LOW 495T>C Asp165Asp
M0196243 DCGIJPMF_00085 66158 3 Gut 0.30 protein_coding synonymous_variant LOW 531C>T Leu177Leu
M0196244 DCGIJPMF_00085 66188 3 Gut 0.30 protein_coding synonymous_variant LOW 561T>G Ser187Ser
M0196245 DCGIJPMF_00081 66217 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3765T>C None
M0196246 DCGIJPMF_00081 66232 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3780A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term