Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1121
  Reference Plasmid   NZ_CP117958.1
  Reference Plasmid Size   122293
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0196818 GPEFHNOM_00076 70789 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3418G>A None
M0196819 GPEFHNOM_00081 71249 3 Gut 0.27 protein_coding synonymous_variant LOW 189G>A Ala63Ala
M0196820 GPEFHNOM_00081 71285 3 Gut 0.27 protein_coding synonymous_variant LOW 153A>T Ala51Ala
M0196821 GPEFHNOM_00081 71297 3 Gut 0.27 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0196822 GPEFHNOM_00081 71300 3 Gut 0.27 protein_coding synonymous_variant LOW 138A>G Lys46Lys
M0196823 GPEFHNOM_00081 71303 3 Gut 0.27 protein_coding synonymous_variant LOW 135G>A Glu45Glu
M0196824 GPEFHNOM_00081 71361 3 Gut 0.27 protein_coding missense_variant MODERATE 77C>T Thr26Ile
M0196825 GPEFHNOM_00081 71387 3 Gut 0.27 protein_coding synonymous_variant LOW 51G>A Gly17Gly
M0196826 GPEFHNOM_00082 71664 3 Gut 0.27 protein_coding missense_variant MODERATE 575C>T Ala192Val
M0196827 GPEFHNOM_00082 71720 3 Gut 0.27 protein_coding synonymous_variant LOW 519G>A Ala173Ala
M0196828 GPEFHNOM_00082 72004 3 Gut 0.27 protein_coding synonymous_variant LOW 235C>T Leu79Leu
M0196829 GPEFHNOM_00083 72297 3 Gut 0.27 protein_coding synonymous_variant LOW 2247T>C Val749Val
M0196830 GPEFHNOM_00083 72324 3 Gut 0.27 protein_coding synonymous_variant LOW 2220T>A Arg740Arg
M0196831 GPEFHNOM_00083 72372 3 Gut 0.27 protein_coding synonymous_variant LOW 2172A>G Glu724Glu
M0196832 GPEFHNOM_00083 72408 3 Gut 0.27 protein_coding synonymous_variant LOW 2136A>G Ala712Ala
M0196833 GPEFHNOM_00083 72413 3 Gut 0.27 protein_coding missense_variant MODERATE 2131A>G Thr711Ala
M0196834 GPEFHNOM_00083 72427 3 Gut 0.27 protein_coding missense_variant MODERATE 2117G>C Ser706Thr
M0196835 GPEFHNOM_00083 72459 3 Gut 0.27 protein_coding missense_variant MODERATE 2085T>G Asp695Glu
M0196836 GPEFHNOM_00083 72472 3 Gut 0.27 protein_coding missense_variant MODERATE 2072T>A Leu691Gln
M0196837 GPEFHNOM_00083 72486 3 Gut 0.27 protein_coding synonymous_variant LOW 2058C>T Asp686Asp
M0196838 GPEFHNOM_00083 72519 3 Gut 0.27 protein_coding synonymous_variant LOW 2025T>A Arg675Arg
M0196839 GPEFHNOM_00083 72521 3 Gut 0.27 protein_coding missense_variant MODERATE 2023C>A Arg675Ser
M0196840 GPEFHNOM_00083 72540 3 Gut 0.27 protein_coding synonymous_variant LOW 2004T>C Arg668Arg
M0196841 GPEFHNOM_00083 72621 3 Gut 0.27 protein_coding synonymous_variant LOW 1923G>A Gly641Gly
M0196842 GPEFHNOM_00083 72666 3 Gut 0.27 protein_coding synonymous_variant LOW 1878T>C Gly626Gly
M0196843 GPEFHNOM_00083 72693 3 Gut 0.27 protein_coding synonymous_variant LOW 1851T>C Arg617Arg
M0196844 GPEFHNOM_00083 72714 3 Gut 0.27 protein_coding synonymous_variant LOW 1830A>G Val610Val
M0196845 GPEFHNOM_00083 72732 3 Gut 0.27 protein_coding synonymous_variant LOW 1812C>T Pro604Pro
M0196846 GPEFHNOM_00083 72833 3 Gut 0.27 protein_coding missense_variant MODERATE 1711C>A Arg571Ser
M0196847 GPEFHNOM_00083 72855 3 Gut 0.27 protein_coding synonymous_variant LOW 1689C>T Ser563Ser
M0196848 GPEFHNOM_00083 73085 3 Gut 0.27 protein_coding missense_variant MODERATE 1459C>G Gln487Glu
M0196849 GPEFHNOM_00083 73086 3 Gut 0.27 protein_coding synonymous_variant LOW 1458G>A Ala486Ala
M0196850 GPEFHNOM_00083 73107 3 Gut 0.27 protein_coding synonymous_variant LOW 1437G>T Pro479Pro
M0196851 GPEFHNOM_00083 73109 3 Gut 0.27 protein_coding missense_variant MODERATE 1435C>G Pro479Ala
M0196852 GPEFHNOM_00083 73110 3 Gut 0.27 protein_coding synonymous_variant LOW 1434A>G Lys478Lys
M0196853 GPEFHNOM_00083 73111 3 Gut 0.27 protein_coding missense_variant MODERATE 1433A>G Lys478Arg
M0196854 GPEFHNOM_00083 73113 3 Gut 0.27 protein_coding synonymous_variant LOW 1431G>A Pro477Pro
M0196855 GPEFHNOM_00083 73287 3 Gut 0.27 protein_coding synonymous_variant LOW 1257T>C Ile419Ile
M0196856 GPEFHNOM_00083 73305 3 Gut 0.27 protein_coding synonymous_variant LOW 1239A>G Thr413Thr
M0196857 GPEFHNOM_00083 73307 3 Gut 0.27 protein_coding missense_variant MODERATE 1237A>G Thr413Ala
M0196858 GPEFHNOM_00083 73341 3 Gut 0.27 protein_coding synonymous_variant LOW 1203G>A Leu401Leu
M0196859 GPEFHNOM_00083 73362 3 Gut 0.27 protein_coding synonymous_variant LOW 1182A>G Arg394Arg
M0196860 GPEFHNOM_00083 73371 3 Gut 0.27 protein_coding synonymous_variant LOW 1173T>C Gly391Gly
M0196861 GPEFHNOM_00083 73434 3 Gut 0.27 protein_coding synonymous_variant LOW 1110A>G Thr370Thr
M0196862 GPEFHNOM_00083 73509 3 Gut 0.27 protein_coding synonymous_variant LOW 1035A>G Gly345Gly
M0196863 GPEFHNOM_00083 73521 3 Gut 0.27 protein_coding missense_variant MODERATE 1023A>C Lys341Asn
M0196864 GPEFHNOM_00083 73522 3 Gut 0.27 protein_coding missense_variant MODERATE 1022A>C Lys341Thr
M0196865 GPEFHNOM_00083 73527 3 Gut 0.27 protein_coding synonymous_variant LOW 1017A>G Pro339Pro
M0196866 GPEFHNOM_00083 73530 3 Gut 0.27 protein_coding synonymous_variant LOW 1014A>C Thr338Thr
M0196867 GPEFHNOM_00083 73545 3 Gut 0.27 protein_coding synonymous_variant LOW 999T>C Gly333Gly
M0196868 GPEFHNOM_00083 73569 3 Gut 0.27 protein_coding synonymous_variant LOW 975A>G Ser325Ser
M0196869 GPEFHNOM_00083 73624 3 Gut 0.27 protein_coding missense_variant MODERATE 920G>A Arg307Lys
M0196870 GPEFHNOM_00083 73626 3 Gut 0.27 protein_coding synonymous_variant LOW 918C>T Ser306Ser
M0196871 GPEFHNOM_00083 73654 3 Gut 0.27 protein_coding missense_variant MODERATE 890A>G Asn297Ser
M0196872 GPEFHNOM_00083 73676 3 Gut 0.27 protein_coding missense_variant MODERATE 868A>G Asn290Asp
M0196873 GPEFHNOM_00083 73710 3 Gut 0.27 protein_coding synonymous_variant LOW 834G>A Glu278Glu
M0196874 GPEFHNOM_00083 73713 3 Gut 0.27 protein_coding synonymous_variant LOW 831G>A Gly277Gly
M0196875 GPEFHNOM_00083 73753 3 Gut 0.27 protein_coding missense_variant MODERATE 791C>T Ala264Val
M0196876 GPEFHNOM_00083 73764 3 Gut 0.27 protein_coding synonymous_variant LOW 780G>C Gly260Gly
M0196877 GPEFHNOM_00083 73854 3 Gut 0.27 protein_coding synonymous_variant LOW 690A>G Glu230Glu
M0196878 GPEFHNOM_00083 73931 3 Gut 0.27 protein_coding missense_variant MODERATE 613A>G Thr205Ala
M0196879 GPEFHNOM_00083 73935 3 Gut 0.27 protein_coding synonymous_variant LOW 609T>C Gly203Gly
M0196880 GPEFHNOM_00083 73938 3 Gut 0.27 protein_coding missense_variant MODERATE 606A>C Lys202Asn
M0196881 GPEFHNOM_00083 73942 3 Gut 0.27 protein_coding missense_variant MODERATE 602T>A Leu201Gln
M0196882 GPEFHNOM_00083 74025 3 Gut 0.27 protein_coding synonymous_variant LOW 519T>C Gly173Gly
M0196883 GPEFHNOM_00083 74148 3 Gut 0.27 protein_coding synonymous_variant LOW 396A>G Lys132Lys
M0196884 GPEFHNOM_00083 74158 3 Gut 0.27 protein_coding missense_variant MODERATE 386T>C Val129Ala
M0196885 GPEFHNOM_00083 74190 3 Gut 0.27 protein_coding synonymous_variant LOW 354G>T Arg118Arg
M0196886 GPEFHNOM_00083 74247 3 Gut 0.27 protein_coding synonymous_variant LOW 297C>T Ala99Ala
M0196887 GPEFHNOM_00083 74256 3 Gut 0.27 protein_coding synonymous_variant LOW 288C>T Gly96Gly
M0196888 GPEFHNOM_00083 74266 3 Gut 0.27 protein_coding missense_variant MODERATE 278T>C Val93Ala
M0196889 GPEFHNOM_00083 74283 3 Gut 0.27 protein_coding synonymous_variant LOW 261T>G Arg87Arg
M0196890 GPEFHNOM_00083 74403 3 Gut 0.27 protein_coding synonymous_variant LOW 141G>A Thr47Thr
M0196891 GPEFHNOM_00084 74550 3 Gut 0.27 protein_coding stop_lost&splice_region_variant HIGH 2979G>T Ter993Tyrext*?
M0196892 GPEFHNOM_00084 74571 3 Gut 0.27 protein_coding synonymous_variant LOW 2958T>C Arg986Arg
M0196893 GPEFHNOM_00084 74660 3 Gut 0.27 protein_coding synonymous_variant LOW 2869T>C Leu957Leu
M0196894 GPEFHNOM_00084 74781 3 Gut 0.27 protein_coding synonymous_variant LOW 2748T>C Asp916Asp
M0196895 GPEFHNOM_00084 74805 3 Gut 0.27 protein_coding synonymous_variant LOW 2724T>C Ile908Ile
M0196896 GPEFHNOM_00084 74820 3 Gut 0.27 protein_coding missense_variant MODERATE 2709C>A Asp903Glu
M0196897 GPEFHNOM_00084 74823 3 Gut 0.27 protein_coding synonymous_variant LOW 2706C>T Ile902Ile
M0196898 GPEFHNOM_00084 74824 3 Gut 0.27 protein_coding missense_variant MODERATE 2705T>C Ile902Thr
M0196899 GPEFHNOM_00084 74831 3 Gut 0.27 protein_coding missense_variant MODERATE 2698A>G Ser900Gly
M0196900 GPEFHNOM_00084 74928 3 Gut 0.27 protein_coding synonymous_variant LOW 2601T>C Ala867Ala
M0196901 GPEFHNOM_00084 74949 3 Gut 0.27 protein_coding synonymous_variant LOW 2580T>G Leu860Leu
M0196902 GPEFHNOM_00084 74986 3 Gut 0.27 protein_coding missense_variant MODERATE 2543T>C Leu848Ser
M0196903 GPEFHNOM_00084 75000 3 Gut 0.27 protein_coding synonymous_variant LOW 2529T>G Arg843Arg
M0196904 GPEFHNOM_00084 75027 3 Gut 0.27 protein_coding synonymous_variant LOW 2502T>G Thr834Thr
M0196905 GPEFHNOM_00084 75068 3 Gut 0.27 protein_coding missense_variant MODERATE 2461A>C Thr821Pro
M0196906 GPEFHNOM_00084 75105 3 Gut 0.27 protein_coding synonymous_variant LOW 2424T>C Ser808Ser
M0196907 GPEFHNOM_00084 75438 3 Gut 0.27 protein_coding synonymous_variant LOW 2091C>T Ser697Ser
M0196908 GPEFHNOM_00084 75441 3 Gut 0.27 protein_coding synonymous_variant LOW 2088C>T Ser696Ser
M0196909 GPEFHNOM_00084 75484 3 Gut 0.27 protein_coding missense_variant MODERATE 2045C>G Thr682Ser
M0196910 GPEFHNOM_00084 75504 3 Gut 0.27 protein_coding synonymous_variant LOW 2025A>G Thr675Thr
M0196911 GPEFHNOM_00084 75576 3 Gut 0.27 protein_coding synonymous_variant LOW 1953T>C Arg651Arg
M0196912 GPEFHNOM_00084 75657 3 Gut 0.27 protein_coding synonymous_variant LOW 1872C>T Leu624Leu
M0196913 GPEFHNOM_00084 75695 3 Gut 0.27 protein_coding missense_variant MODERATE 1834G>C Glu612Gln
M0196914 GPEFHNOM_00084 75960 3 Gut 0.27 protein_coding synonymous_variant LOW 1569T>C Asp523Asp
M0196915 GPEFHNOM_00084 76031 3 Gut 0.27 protein_coding missense_variant MODERATE 1498C>A Pro500Thr
M0196916 GPEFHNOM_00084 76239 3 Gut 0.27 protein_coding synonymous_variant LOW 1290C>T Arg430Arg
M0196917 GPEFHNOM_00084 76242 3 Gut 0.27 protein_coding synonymous_variant LOW 1287T>C Asp429Asp
M0196918 GPEFHNOM_00084 76356 3 Gut 0.27 protein_coding synonymous_variant LOW 1173A>C Ser391Ser
M0196919 GPEFHNOM_00084 76392 3 Gut 0.27 protein_coding synonymous_variant LOW 1137A>G Leu379Leu
M0196920 GPEFHNOM_00084 76521 3 Gut 0.27 protein_coding synonymous_variant LOW 1008T>C Tyr336Tyr
M0196921 GPEFHNOM_00084 76560 3 Gut 0.27 protein_coding synonymous_variant LOW 969C>G Ala323Ala
M0196922 GPEFHNOM_00084 76605 3 Gut 0.27 protein_coding synonymous_variant LOW 924T>A Pro308Pro
M0196923 GPEFHNOM_00084 76627 3 Gut 0.27 protein_coding missense_variant MODERATE 902T>C Ile301Thr
M0196924 GPEFHNOM_00084 76677 3 Gut 0.27 protein_coding synonymous_variant LOW 852C>A Thr284Thr
M0196925 GPEFHNOM_00084 76893 3 Gut 0.27 protein_coding synonymous_variant LOW 636T>C Gly212Gly
M0196926 GPEFHNOM_00084 77166 3 Gut 0.27 protein_coding synonymous_variant LOW 363T>C Ala121Ala
M0196927 GPEFHNOM_00084 77347 3 Gut 0.27 protein_coding missense_variant MODERATE 182C>A Pro61Gln
M0196928 GPEFHNOM_00085 78059 3 Gut 0.27 protein_coding synonymous_variant LOW 1677C>T Ser559Ser
M0196929 GPEFHNOM_00085 78146 3 Gut 0.27 protein_coding synonymous_variant LOW 1590A>G Thr530Thr
M0196930 GPEFHNOM_00085 78194 3 Gut 0.27 protein_coding synonymous_variant LOW 1542C>T Asp514Asp
M0196931 GPEFHNOM_00085 78257 3 Gut 0.27 protein_coding synonymous_variant LOW 1479T>G Ala493Ala
M0196932 GPEFHNOM_00085 78401 3 Gut 0.27 protein_coding synonymous_variant LOW 1335G>A Lys445Lys
M0196933 GPEFHNOM_00085 78623 3 Gut 0.27 protein_coding synonymous_variant LOW 1113T>G Arg371Arg
M0196934 GPEFHNOM_00085 78647 3 Gut 0.27 protein_coding synonymous_variant LOW 1089C>T Pro363Pro
M0196935 GPEFHNOM_00085 78650 3 Gut 0.27 protein_coding synonymous_variant LOW 1086G>A Glu362Glu
M0196936 GPEFHNOM_00085 78710 3 Gut 0.27 protein_coding synonymous_variant LOW 1026C>T Ala342Ala
M0196937 GPEFHNOM_00085 78767 3 Gut 0.27 protein_coding synonymous_variant LOW 969A>T Ser323Ser
M0196938 GPEFHNOM_00085 78907 3 Gut 0.27 protein_coding missense_variant MODERATE 829C>T Leu277Phe
M0196939 GPEFHNOM_00085 79118 3 Gut 0.27 protein_coding synonymous_variant LOW 618C>T Ala206Ala
M0196940 GPEFHNOM_00085 79379 3 Gut 0.27 protein_coding synonymous_variant LOW 357A>C Ala119Ala
M0196941 GPEFHNOM_00085 79385 3 Gut 0.27 protein_coding synonymous_variant LOW 351T>C Val117Val
M0196942 GPEFHNOM_00085 79388 3 Gut 0.27 protein_coding synonymous_variant LOW 348A>T Thr116Thr
M0196943 GPEFHNOM_00085 79390 3 Gut 0.27 protein_coding missense_variant MODERATE 346A>T Thr116Ser
M0196944 GPEFHNOM_00085 79391 3 Gut 0.27 protein_coding synonymous_variant LOW 345C>G Ala115Ala
M0196945 GPEFHNOM_00085 79421 3 Gut 0.27 protein_coding synonymous_variant LOW 315A>T Gly105Gly
M0196946 GPEFHNOM_00085 79470 3 Gut 0.27 protein_coding missense_variant MODERATE 266G>A Arg89Gln
M0196947 GPEFHNOM_00085 79493 3 Gut 0.27 protein_coding synonymous_variant LOW 243C>T Ile81Ile
M0196948 GPEFHNOM_00085 79606 3 Gut 0.27 protein_coding missense_variant MODERATE 130G>A Val44Ile
M0196949 GPEFHNOM_00085 79619 3 Gut 0.27 protein_coding synonymous_variant LOW 117T>A Ile39Ile
M0196950 GPEFHNOM_00084 79747 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2219T>C None
M0196951 GPEFHNOM_00084 80636 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3108A>G None
M0196952 GPEFHNOM_00089 81989 3 Gut 0.27 protein_coding missense_variant MODERATE 2815C>A Gln939Lys
M0196953 GPEFHNOM_00089 82040 3 Gut 0.27 protein_coding missense_variant MODERATE 2764G>A Asp922Asn
M0196954 GPEFHNOM_00089 82404 3 Gut 0.27 protein_coding missense_variant MODERATE 2400C>A Asp800Glu
M0196955 GPEFHNOM_00089 82704 3 Gut 0.27 protein_coding synonymous_variant LOW 2100A>G Glu700Glu
M0196956 GPEFHNOM_00089 82806 3 Gut 0.27 protein_coding synonymous_variant LOW 1998C>T Ser666Ser
M0196957 GPEFHNOM_00089 84249 3 Gut 0.27 protein_coding synonymous_variant LOW 555C>T Asp185Asp
M0196958 GPEFHNOM_00089 84391 3 Gut 0.27 protein_coding missense_variant MODERATE 413G>A Ser138Asn
M0196959 GPEFHNOM_00092 86337 3 Gut 0.27 protein_coding missense_variant MODERATE 221C>T Thr74Ile
M0196960 GPEFHNOM_00092 86505 3 Gut 0.27 protein_coding missense_variant MODERATE 53G>A Arg18Lys
M0196961 GPEFHNOM_00094 87092 4 Gut 0.36 protein_coding missense_variant MODERATE 266T>C Leu89Pro
M0196962 GPEFHNOM_00095 87424 3 Gut 0.27 protein_coding synonymous_variant LOW 205C>T Leu69Leu
M0196963 GPEFHNOM_00095 87568 4 Gut 0.36 protein_coding missense_variant MODERATE 61G>T Ala21Ser
M0196964 GPEFHNOM_00089 88103 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3300G>A None
M0196965 GPEFHNOM_00099 89420 4 Gut 0.36 protein_coding synonymous_variant LOW 1560G>T Leu520Leu
M0196966 GPEFHNOM_00099 89484 4 Gut 0.36 protein_coding missense_variant MODERATE 1496A>T Gln499Leu
M0196967 GPEFHNOM_00099 90599 4 Gut 0.36 protein_coding synonymous_variant LOW 381C>T Asn127Asn
M0196968 GPEFHNOM_00100 91159 4 Gut 0.36 protein_coding synonymous_variant LOW 456G>A Pro152Pro
M0196969 GPEFHNOM_00101 91718 4 Gut 0.36 protein_coding synonymous_variant LOW 211T>C Leu71Leu
M0196970 GPEFHNOM_00101 91766 4 Gut 0.36 protein_coding missense_variant MODERATE 163C>T His55Tyr
M0196971 GPEFHNOM_00101 91779 4 Gut 0.36 protein_coding synonymous_variant LOW 150C>T Leu50Leu
M0196972 GPEFHNOM_00101 91815 4 Gut 0.36 protein_coding synonymous_variant LOW 114T>C Pro38Pro
M0196973 GPEFHNOM_00102 92844 4 Gut 0.36 protein_coding missense_variant MODERATE 107G>A Gly36Asp
M0196974 GPEFHNOM_00103 93373 4 Gut 0.36 protein_coding synonymous_variant LOW 207G>A Arg69Arg
M0196975 GPEFHNOM_00105 94880 8 Gut 0.73 protein_coding missense_variant MODERATE 1707G>T Glu569Asp
M0196976 GPEFHNOM_00102 96987 4 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -4037C>T None
M0196977 GPEFHNOM_00108 97309 4 Gut 0.36 protein_coding synonymous_variant LOW 309G>A Pro103Pro
M0196978 GPEFHNOM_00111 99470 3 Gut 0.27 protein_coding synonymous_variant LOW 453G>A Pro151Pro
M0196979 GPEFHNOM_00112 100273 3 Gut 0.27 protein_coding synonymous_variant LOW 378G>A Glu126Glu
M0196980 GPEFHNOM_00112 100366 3 Gut 0.27 protein_coding synonymous_variant LOW 285A>T Thr95Thr
M0196981 GPEFHNOM_00114 101389 3 Gut 0.27 protein_coding missense_variant MODERATE 148G>A Gly50Ser
M0196982 GPEFHNOM_00116 101985 3 Gut 0.27 protein_coding synonymous_variant LOW 180A>T Ile60Ile
M0196983 GPEFHNOM_00108 102193 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4576A>T None
M0196984 GPEFHNOM_00117 102282 3 Gut 0.27 protein_coding synonymous_variant LOW 648A>G Leu216Leu
M0196985 GPEFHNOM_00118 103090 3 Gut 0.27 protein_coding synonymous_variant LOW 357G>A Arg119Arg
M0196986 GPEFHNOM_00118 103337 3 Gut 0.27 protein_coding missense_variant MODERATE 110G>A Ser37Asn
M0196987 GPEFHNOM_00111 103578 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3656C>T None
M0196988 GPEFHNOM_00111 103712 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3790G>T None
M0196989 GPEFHNOM_00119 104058 3 Gut 0.27 protein_coding synonymous_variant LOW 189C>A Gly63Gly
M0196990 GPEFHNOM_00111 104498 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4576A>G None
M0196991 GPEFHNOM_00111 104519 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4597A>G None
M0196992 GPEFHNOM_00111 104547 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4625C>T None
M0196993 GPEFHNOM_00112 105600 3 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4950T>C None
M0196994 GPEFHNOM_00121 105753 3 Gut 0.27 protein_coding missense_variant MODERATE 152T>C Val51Ala
M0196995 GPEFHNOM_00103 93385 4 Gut 0.36 protein_coding synonymous_variant LOW 195T>C Arg65Arg
M0196996 GPEFHNOM_00103 93505 4 Gut 0.36 protein_coding synonymous_variant LOW 75C>T Gly25Gly
M0196997 GPEFHNOM_00104 93827 4 Gut 0.36 protein_coding missense_variant MODERATE 136G>A Val46Met
M0196998 GPEFHNOM_00105 94212 4 Gut 0.36 protein_coding missense_variant MODERATE 2375G>A Arg792Lys
M0196999 GPEFHNOM_00105 94679 4 Gut 0.36 protein_coding synonymous_variant LOW 1908T>C Gly636Gly
M0197000 GPEFHNOM_00113 101110 4 Gut 0.36 protein_coding missense_variant MODERATE 94G>C Val32Leu
M0197001 GPEFHNOM_00114 101315 4 Gut 0.36 protein_coding synonymous_variant LOW 222A>T Arg74Arg
M0197002 GPEFHNOM_00114 101402 4 Gut 0.36 protein_coding synonymous_variant LOW 135A>G Ser45Ser
M0197003 GPEFHNOM_00114 101425 4 Gut 0.36 protein_coding missense_variant MODERATE 112A>G Ile38Val
M0197004 GPEFHNOM_00114 101435 4 Gut 0.36 protein_coding synonymous_variant LOW 102C>A Ala34Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
GPEFHNOM_00022 VFG000940 Aerobactin 94.9 0 1 574 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucD experiment
GPEFHNOM_00025 VFG000938 Aerobactin 97.6 0 1 580 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucC experiment
GPEFHNOM_00026 VFG000937 Aerobactin 97.6 4.8e-252 1 425 1.0 0.9551 Nutritional/Metabolic factor L-lysine 6-monooxygenase IucD experiment
GPEFHNOM_00027 VFG048621 Aerobactin 99.7 0 1 732 1.0 0.9986 Nutritional/Metabolic factor ferric aerobactin receptor IutA experiment
GPEFHNOM_00117 VFG001445 TraJ 73.7 1.6e-76 2 191 0.8444 0.9453 Invasion unknown protein experiment
GPEFHNOM_00015 VFG012575 Iron/manganese transport 100 7.4e-174 1 304 1.0 1 Nutritional/Metabolic factor iron/manganese ABC transporter substrate-binding protein SitA prediction
GPEFHNOM_00016 VFG034214 Iron/manganese transport 100 5.5e-152 1 275 1.0 1 Nutritional/Metabolic factor iron/manganese ABC transporter ATP-binding protein SitB prediction
GPEFHNOM_00017 VFG012585 Iron/manganese transport 100 1.4e-153 1 285 1.0 1 Nutritional/Metabolic factor iron/manganese ABC transporter permease subunit SitC prediction
GPEFHNOM_00018 VFG012590 Iron/manganese transport 100 3.8e-148 1 285 1.0 1 Nutritional/Metabolic factor iron/manganese ABC transporter permease subunit SitD prediction
GPEFHNOM_00022 VFG012526 Aerobactin 100 0 1 574 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucD prediction
GPEFHNOM_00025 VFG012522 Aerobactin 100 0 1 580 1.0 1 Nutritional/Metabolic factor aerobactin siderophore biosynthesis protein IucC prediction
GPEFHNOM_00026 VFG033958 Aerobactin 99.8 1.4e-255 1 425 1.0 1 Nutritional/Metabolic factor L-lysine 6-monooxygenase IucD prediction
GPEFHNOM_00027 VFG033944 Aerobactin 100 0 1 732 1.0 0.9986 Nutritional/Metabolic factor ferric aerobactin receptor precusor IutA prediction
GPEFHNOM_00117 VFG001445 TraJ 73.7 1.2e-75 2 191 0.8444 0.9453 Invasion unknown protein prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
GPEFHNOM_00015 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 75.8 1.1e-133 8 304 0.9770 0.9738 experiment
GPEFHNOM_00016 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 77.7 3.7e-115 2 266 0.9636 0.9707 experiment
GPEFHNOM_00017 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 87 9e-133 1 277 0.9719 0.9685 experiment
GPEFHNOM_00015 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 76.4 4e-132 8 304 0.9770 0.9738 prediction
GPEFHNOM_00016 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 81.1 2.3e-118 2 266 0.9636 0.9707 prediction
GPEFHNOM_00017 Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 87.8 3.4e-133 1 279 0.9789 0.9789 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
GPEFHNOM_00015 PHI:10082 STM14_RS15345 75.8 1.9e-132 8 304 0.9770 0.9705 eudicots infection manganese/iron ABC transporter ATP-binding protein unaffected pathogenicity
GPEFHNOM_00016 PHI:10083 STM14_RS15350 77.7 6.1e-114 2 266 0.9636 0.9707 eudicots infection iron ABC transporter permease unaffected pathogenicity
GPEFHNOM_00017 PHI:10084 STM14_RS15355 87 1.5e-131 1 277 0.9719 0.9685 eudicots infection iron ABC transporter permease unaffected pathogenicity
GPEFHNOM_00022 PHI:124067 iucA (PAGR_g3927) 78.5 5.7e-271 1 573 0.9983 0.9598 monocots None aerobactin siderophores unaffected pathogenicity
GPEFHNOM_00023 PHI:124068 iucB (PAGR_g3926) 77.4 4.3e-55 1 124 0.8732 0.9429 monocots None aerobactin siderophores unaffected pathogenicity
GPEFHNOM_00024 PHI:124068 iucB (PAGR_g3926) 82.1 2.1e-88 2 174 0.9943 0.9429 monocots None aerobactin siderophores unaffected pathogenicity
GPEFHNOM_00025 PHI:124069 iucC (PAGR_g3925) 83.9 9.1e-301 1 577 0.9948 0.9983 monocots None aerobactin siderophores unaffected pathogenicity
GPEFHNOM_00026 PHI:3610 iucD 99.8 5e-256 1 425 1.0000 1.0000 birds colibacillosis aerobactin reduced virulence
GPEFHNOM_00027 PHI:6563 iucA 99.7 0 1 732 1.0000 0.9986 rodents pneumonia aerobactin reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GPEFHNOM_00119 QAZ75040.1|GH23 100 4.96e-124 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
GPEFHNOM_00015 3.A.1.15.7 75.8 4.2e-132 8 304 0.9770 0.9705 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
GPEFHNOM_00016 3.A.1.15.7 77.7 1.4e-113 2 266 0.9636 0.8689 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
GPEFHNOM_00017 3.A.1.15.7 87 3.4e-131 1 277 0.9719 0.9082 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
GPEFHNOM_00041 2.A.10.1.2 71 7.9e-121 1 317 0.9875 0.9664 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.10 The 2-Keto-3-Deoxygluconate Transporter (KdgT) Family