Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1125
  Reference Plasmid   NZ_CP118844.1
  Reference Plasmid Size   41408
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0109291 JKAKEDCH_00017 20326 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4406T>C None
M0109292 JKAKEDCH_00017 20391 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4471T>A None
M0109293 JKAKEDCH_00017 20392 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4472A>C None
M0109294 JKAKEDCH_00017 20395 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4475G>T None
M0109295 JKAKEDCH_00017 20396 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4476T>A None
M0109296 JKAKEDCH_00017 20829 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4909C>T None
M0109297 JKAKEDCH_00017 20849 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4929C>A None
M0109298 JKAKEDCH_00020 20922 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1914A>T None
M0109299 JKAKEDCH_00020 20979 8 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1971A>C None
M0109300 JKAKEDCH_00020 21032 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2024A>C None
M0109301 JKAKEDCH_00020 21068 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2060A>T None
M0109302 JKAKEDCH_00020 21075 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2067T>C None
M0109303 JKAKEDCH_00020 21107 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2099A>G None
M0109304 JKAKEDCH_00023 21760 3 Skin 0.06 protein_coding synonymous_variant LOW 627C>T Arg209Arg
M0109305 JKAKEDCH_00023 21769 5 Skin 0.11 protein_coding synonymous_variant LOW 636A>G Glu212Glu
M0109306 JKAKEDCH_00020 22011 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3003T>G None
M0109307 JKAKEDCH_00020 22035 8 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3027C>T None
M0109308 JKAKEDCH_00020 22075 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3067A>G None
M0109309 JKAKEDCH_00020 22114 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3106T>A None
M0109310 JKAKEDCH_00020 23323 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4315T>C None
M0109311 JKAKEDCH_00020 23398 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4390C>T None
M0109312 JKAKEDCH_00020 23437 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4429T>G None
M0109313 JKAKEDCH_00020 23576 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4568A>T None
M0109314 JKAKEDCH_00020 23614 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4606C>T None
M0109315 JKAKEDCH_00020 23788 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4780A>C None
M0109316 JKAKEDCH_00020 23811 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4803T>C None
M0109317 JKAKEDCH_00020 23861 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4853G>A None
M0109318 JKAKEDCH_00022 24114 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3418C>T None
M0109319 JKAKEDCH_00022 24281 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3585C>A None
M0109320 JKAKEDCH_00022 24464 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3768T>C None
M0109321 JKAKEDCH_00022 24494 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3798C>T None
M0109322 JKAKEDCH_00025 24675 6 Skin 0.13 protein_coding synonymous_variant LOW 108G>A Thr36Thr
M0109323 JKAKEDCH_00025 24716 7 Skin 0.15 protein_coding missense_variant MODERATE 149G>T Ser50Ile
M0109324 JKAKEDCH_00026 24738 5 Skin 0.11 protein_coding missense_variant MODERATE 32G>A Cys11Tyr
M0109325 JKAKEDCH_00027 25030 9 Skin 0.19 protein_coding missense_variant MODERATE 224T>C Ile75Thr
M0109326 JKAKEDCH_00027 25047 6 Skin 0.13 protein_coding missense_variant MODERATE 241G>A Val81Ile
M0109327 JKAKEDCH_00027 25226 9 Skin 0.19 protein_coding missense_variant MODERATE 420C>A His140Gln
M0109328 JKAKEDCH_00028 25453 7 Skin 0.15 protein_coding synonymous_variant LOW 319T>C Leu107Leu
M0109329 JKAKEDCH_00028 25520 6 Skin 0.13 protein_coding synonymous_variant LOW 252T>A Ile84Ile
M0109330 JKAKEDCH_00028 25732 4 Skin 0.09 protein_coding missense_variant MODERATE 40T>C Phe14Leu
M0109331 JKAKEDCH_00028 25779 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -8A>G None
M0109332 JKAKEDCH_00028 25784 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -13A>G None
M0109333 JKAKEDCH_00028 25793 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -22A>G None
M0109334 JKAKEDCH_00028 25807 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -36T>C None
M0109335 JKAKEDCH_00028 25885 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -114T>G None
M0109336 JKAKEDCH_00028 26017 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -246C>A None
M0109337 JKAKEDCH_00028 29589 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3818A>G None
M0109338 JKAKEDCH_00028 29665 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3894A>C None
M0109339 JKAKEDCH_00028 29762 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3991A>C None
M0109340 JKAKEDCH_00032 29989 3 Skin 0.06 protein_coding missense_variant MODERATE 20T>C Leu7Ser
M0109341 JKAKEDCH_00032 30262 3 Skin 0.06 protein_coding missense_variant MODERATE 293T>C Ile98Thr
M0109342 JKAKEDCH_00032 30271 3 Skin 0.06 protein_coding missense_variant MODERATE 302A>G Gln101Arg
M0109343 JKAKEDCH_00032 30272 3 Skin 0.06 protein_coding missense_variant MODERATE 303G>T Gln101His
M0109344 JKAKEDCH_00033 30906 4 Skin 0.09 protein_coding missense_variant MODERATE 529G>A Val177Ile
M0109345 JKAKEDCH_00034 31227 4 Skin 0.09 protein_coding synonymous_variant LOW 153T>C Gly51Gly
M0109346 JKAKEDCH_00034 31326 4 Skin 0.09 protein_coding synonymous_variant LOW 252T>C Asn84Asn
M0109347 JKAKEDCH_00034 31338 4 Skin 0.09 protein_coding synonymous_variant LOW 264G>A Lys88Lys
M0109348 JKAKEDCH_00034 31426 4 Skin 0.09 protein_coding missense_variant MODERATE 352A>G Thr118Ala
M0109349 JKAKEDCH_00034 31617 3 Skin 0.06 protein_coding synonymous_variant LOW 543A>C Ile181Ile
M0109350 JKAKEDCH_00034 31770 4 Skin 0.09 protein_coding synonymous_variant LOW 696T>C Gly232Gly
M0109351 JKAKEDCH_00030 31842 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3560C>T None
M0109352 JKAKEDCH_00030 31843 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3561C>T None
M0109353 JKAKEDCH_00030 31849 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3567A>G None
M0109354 JKAKEDCH_00030 31851 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3569A>G None
M0109355 JKAKEDCH_00030 31857 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3575C>A None
M0109356 JKAKEDCH_00030 31889 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3607T>A None
M0109357 JKAKEDCH_00030 31926 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3644A>T None
M0109358 JKAKEDCH_00017 20912 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4992T>C None
M0109359 JKAKEDCH_00020 20961 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1953C>A None
M0109360 JKAKEDCH_00020 21047 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2039A>G None
M0109361 JKAKEDCH_00023 21157 3 Skin 0.06 protein_coding synonymous_variant LOW 24C>T Tyr8Tyr
M0109362 JKAKEDCH_00020 22112 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3104G>A None
M0109363 JKAKEDCH_00037 37333 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2763C>T None
M0109364 JKAKEDCH_00037 37342 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2772T>C None
M0109365 JKAKEDCH_00037 38120 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3550C>A None
M0109366 JKAKEDCH_00037 38252 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3682C>T None
M0109367 JKAKEDCH_00037 38333 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3763C>T None
M0109368 JKAKEDCH_00037 38593 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4023A>G None
M0109369 JKAKEDCH_00037 38605 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4035G>A None
M0109370 JKAKEDCH_00037 38726 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4156A>T None
M0109371 JKAKEDCH_00037 38932 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4362C>T None
M0109372 JKAKEDCH_00037 38966 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4396G>A None
M0109373 JKAKEDCH_00045 39041 3 Skin 0.06 protein_coding missense_variant MODERATE 4G>A Gly2Ser
M0109374 JKAKEDCH_00001 48 6 Skin 0.13 protein_coding synonymous_variant LOW 48G>A Gln16Gln
M0109375 JKAKEDCH_00001 271 6 Skin 0.13 protein_coding missense_variant MODERATE 271G>A Glu91Lys
M0109376 JKAKEDCH_00001 272 6 Skin 0.13 protein_coding missense_variant MODERATE 272A>C Glu91Ala
M0109377 JKAKEDCH_00001 408 4 Skin 0.09 protein_coding synonymous_variant LOW 408G>A Glu136Glu
M0109378 JKAKEDCH_00005 802 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2240T>C None
M0109379 JKAKEDCH_00005 984 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2058C>T None
M0109380 JKAKEDCH_00005 1028 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2014G>A None
M0109381 JKAKEDCH_00005 1117 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1925G>A None
M0109382 JKAKEDCH_00005 1128 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1914A>T None
M0109383 JKAKEDCH_00005 1178 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1864A>G None
M0109384 JKAKEDCH_00005 1200 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1842C>T None
M0109385 JKAKEDCH_00046 40347 8 Skin 0.17 protein_coding synonymous_variant LOW 630G>A Glu210Glu
M0109386 JKAKEDCH_00046 40764 8 Skin 0.17 protein_coding synonymous_variant LOW 213C>T His71His
M0109387 JKAKEDCH_00040 41232 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4766G>A None
M0109388 JKAKEDCH_00040 41281 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4815T>C None
M0109389 JKAKEDCH_00040 41339 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4873A>G None
M0109390 JKAKEDCH_00015 14279 3 Skin 0.06 protein_coding synonymous_variant LOW 78C>T Ser26Ser
M0109391 JKAKEDCH_00015 14325 6 Skin 0.13 protein_coding missense_variant MODERATE 124G>A Val42Ile
M0109392 JKAKEDCH_00015 14357 6 Skin 0.13 protein_coding synonymous_variant LOW 156T>C Asn52Asn
M0109393 JKAKEDCH_00015 14411 6 Skin 0.13 protein_coding synonymous_variant LOW 210G>A Glu70Glu
M0109394 JKAKEDCH_00015 14420 6 Skin 0.13 protein_coding synonymous_variant LOW 219A>G Lys73Lys
M0109395 JKAKEDCH_00015 14421 4 Skin 0.09 protein_coding synonymous_variant LOW 220C>T Leu74Leu
M0109396 JKAKEDCH_00015 14525 4 Skin 0.09 protein_coding synonymous_variant LOW 324C>T Asp108Asp
M0109397 JKAKEDCH_00015 14804 3 Skin 0.06 protein_coding synonymous_variant LOW 603T>C Asp201Asp
M0109398 JKAKEDCH_00015 14819 4 Skin 0.09 protein_coding synonymous_variant LOW 618C>T Asn206Asn
M0109399 JKAKEDCH_00015 14857 4 Skin 0.09 protein_coding missense_variant MODERATE 656G>A Gly219Glu
M0109400 JKAKEDCH_00015 14909 6 Skin 0.13 protein_coding synonymous_variant LOW 708A>G Ser236Ser
M0109401 JKAKEDCH_00015 14996 5 Skin 0.11 protein_coding synonymous_variant LOW 795C>T Phe265Phe
M0109402 JKAKEDCH_00015 14999 4 Skin 0.09 protein_coding synonymous_variant LOW 798G>A Pro266Pro
M0109403 JKAKEDCH_00015 15001 4 Skin 0.09 protein_coding missense_variant MODERATE 800C>T Thr267Ile
M0109404 JKAKEDCH_00015 15018 6 Skin 0.13 protein_coding missense_variant MODERATE 817G>A Val273Ile
M0109405 JKAKEDCH_00010 15067 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3251G>A None
M0109406 JKAKEDCH_00016 15287 5 Skin 0.11 protein_coding synonymous_variant LOW 219T>C Asp73Asp
M0109407 JKAKEDCH_00016 15296 5 Skin 0.11 protein_coding synonymous_variant LOW 228A>G Gln76Gln
M0109408 JKAKEDCH_00016 15311 5 Skin 0.11 protein_coding synonymous_variant LOW 243A>G Leu81Leu
M0109409 JKAKEDCH_00016 15317 5 Skin 0.11 protein_coding synonymous_variant LOW 249A>G Leu83Leu
M0109410 JKAKEDCH_00016 15326 4 Skin 0.09 protein_coding missense_variant MODERATE 258T>A Phe86Leu
M0109411 JKAKEDCH_00016 15341 5 Skin 0.11 protein_coding synonymous_variant LOW 273G>A Lys91Lys
M0109412 JKAKEDCH_00016 15347 5 Skin 0.11 protein_coding synonymous_variant LOW 279C>T Phe93Phe
M0109413 JKAKEDCH_00016 15392 5 Skin 0.11 protein_coding synonymous_variant LOW 324C>T Phe108Phe
M0109414 JKAKEDCH_00016 15393 5 Skin 0.11 protein_coding synonymous_variant LOW 325T>C Leu109Leu
M0109415 JKAKEDCH_00016 15412 5 Skin 0.11 protein_coding missense_variant MODERATE 344C>T Ala115Val
M0109416 JKAKEDCH_00016 15414 5 Skin 0.11 protein_coding synonymous_variant LOW 346C>T Leu116Leu
M0109417 JKAKEDCH_00016 15431 5 Skin 0.11 protein_coding synonymous_variant LOW 363A>T Ile121Ile
M0109418 JKAKEDCH_00016 15434 5 Skin 0.11 protein_coding synonymous_variant LOW 366A>C Gly122Gly
M0109419 JKAKEDCH_00016 15633 5 Skin 0.11 protein_coding missense_variant MODERATE 565A>G Asn189Asp
M0109420 JKAKEDCH_00016 15722 4 Skin 0.09 protein_coding synonymous_variant LOW 654G>A Gln218Gln
M0109421 JKAKEDCH_00016 15744 3 Skin 0.06 protein_coding missense_variant MODERATE 676A>G Ile226Val
M0109422 JKAKEDCH_00017 15761 3 Skin 0.06 protein_coding missense_variant MODERATE 160T>G Tyr54Asp
M0109423 JKAKEDCH_00001 126 4 Skin 0.09 protein_coding synonymous_variant LOW 126T>C Asp42Asp
M0109424 JKAKEDCH_00005 828 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2214A>G None
M0109425 JKAKEDCH_00045 39271 4 Skin 0.09 protein_coding missense_variant MODERATE 234G>A Met78Ile
M0109426 JKAKEDCH_00037 39401 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4831G>A None
M0109427 JKAKEDCH_00037 39418 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4848G>A None
M0109428 JKAKEDCH_00038 39587 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4553C>T None
M0109429 JKAKEDCH_00038 39730 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4696C>A None
M0109430 JKAKEDCH_00038 39895 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4861A>T None
M0109431 JKAKEDCH_00038 39990 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4956A>C None
M0109432 JKAKEDCH_00040 41158 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4692C>T None
M0109433 JKAKEDCH_00004 2423 3 Skin 0.06 protein_coding synonymous_variant LOW 222G>T Val74Val
M0109434 JKAKEDCH_00028 25879 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -108A>G None
M0109435 JKAKEDCH_00028 25915 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -144T>C None
M0109436 JKAKEDCH_00012 12620 3 Skin 0.06 protein_coding synonymous_variant LOW 783C>T Asn261Asn
M0109437 JKAKEDCH_00015 14771 3 Skin 0.06 protein_coding synonymous_variant LOW 570T>G Ala190Ala
M0109438 JKAKEDCH_00007 14147 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4121T>A None
M0109439 JKAKEDCH_00007 14152 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4126T>G None
M0109440 JKAKEDCH_00016 15137 5 Skin 0.11 protein_coding synonymous_variant LOW 69C>T Gly23Gly
M0109441 JKAKEDCH_00016 15194 3 Skin 0.06 protein_coding synonymous_variant LOW 126T>C Asn42Asn
M0109442 JKAKEDCH_00020 22408 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3400T>C None
M0109443 JKAKEDCH_00024 22541 3 Skin 0.06 protein_coding synonymous_variant LOW 93C>T Tyr31Tyr
M0109444 JKAKEDCH_00024 22706 3 Skin 0.06 protein_coding synonymous_variant LOW 258C>T Ser86Ser
M0109445 JKAKEDCH_00024 22758 3 Skin 0.06 protein_coding synonymous_variant LOW 310C>A Arg104Arg
M0109446 JKAKEDCH_00024 22812 3 Skin 0.06 protein_coding missense_variant MODERATE 364A>G Ile122Val
M0109447 JKAKEDCH_00016 15150 3 Skin 0.06 protein_coding synonymous_variant LOW 82C>T Leu28Leu
M0109448 JKAKEDCH_00037 39354 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4784G>A None
M0109449 JKAKEDCH_00046 40358 4 Skin 0.09 protein_coding missense_variant MODERATE 619G>A Val207Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term