Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1126
  Reference Plasmid   NZ_CP118845.1
  Reference Plasmid Size   4228
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0109450 JEPAGGAH_00002 1149 4 Skin 1.00 protein_coding synonymous_variant LOW 588T>C Ile196Ile
M0109451 JEPAGGAH_00002 1302 4 Skin 1.00 protein_coding synonymous_variant LOW 741G>A Ser247Ser
M0109452 JEPAGGAH_00002 1316 4 Skin 1.00 protein_coding missense_variant MODERATE 755A>C Asn252Thr
M0109453 JEPAGGAH_00003 1430 3 Skin 0.75 protein_coding missense_variant MODERATE 31C>A Leu11Ile
M0109454 JEPAGGAH_00003 1489 3 Skin 0.75 protein_coding missense_variant MODERATE 90G>T Met30Ile
M0109455 JEPAGGAH_00003 1510 4 Skin 1.00 protein_coding synonymous_variant LOW 111A>G Leu37Leu
M0109456 JEPAGGAH_00003 1530 4 Skin 1.00 protein_coding missense_variant MODERATE 131C>A Thr44Lys
M0109457 JEPAGGAH_00003 1579 4 Skin 1.00 protein_coding synonymous_variant LOW 180A>G Glu60Glu
M0109458 JEPAGGAH_00004 2154 3 Skin 0.75 protein_coding missense_variant MODERATE 61G>C Glu21Gln
M0109459 JEPAGGAH_00004 2172 3 Skin 0.75 protein_coding missense_variant MODERATE 79C>T His27Tyr
M0109460 JEPAGGAH_00002 1186 3 Skin 0.75 protein_coding synonymous_variant LOW 625C>T Leu209Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term