Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1144
  Reference Plasmid   NZ_CP121492.1
  Reference Plasmid Size   41576
  Reference Plasmid GC Content   0.33
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0109971 PJGPFMIK_00053 35082 5 Skin 0.50 protein_coding synonymous_variant LOW 1110T>C Ile370Ile
M0109972 PJGPFMIK_00053 35148 4 Skin 0.40 protein_coding synonymous_variant LOW 1176T>C Pro392Pro
M0109973 PJGPFMIK_00053 35217 5 Skin 0.50 protein_coding synonymous_variant LOW 1245C>T Tyr415Tyr
M0109974 PJGPFMIK_00053 35260 3 Skin 0.30 protein_coding missense_variant MODERATE 1288G>A Val430Ile
M0109975 PJGPFMIK_00053 35262 4 Skin 0.40 protein_coding synonymous_variant LOW 1290C>A Val430Val
M0109976 PJGPFMIK_00053 35319 4 Skin 0.40 protein_coding synonymous_variant LOW 1347A>G Arg449Arg
M0109977 PJGPFMIK_00053 35439 4 Skin 0.40 protein_coding synonymous_variant LOW 1467C>T Ser489Ser
M0109978 PJGPFMIK_00053 35519 4 Skin 0.40 protein_coding missense_variant MODERATE 1547A>G Lys516Arg
M0109979 PJGPFMIK_00053 35523 3 Skin 0.30 protein_coding synonymous_variant LOW 1551A>C Leu517Leu
M0109980 PJGPFMIK_00053 35541 3 Skin 0.30 protein_coding synonymous_variant LOW 1569C>T Thr523Thr
M0109981 PJGPFMIK_00053 35577 4 Skin 0.40 protein_coding synonymous_variant LOW 1605A>G Ser535Ser
M0109982 PJGPFMIK_00053 35583 3 Skin 0.30 protein_coding synonymous_variant LOW 1611T>C Ile537Ile
M0109983 PJGPFMIK_00053 35652 4 Skin 0.40 protein_coding synonymous_variant LOW 1680C>T Gly560Gly
M0109984 PJGPFMIK_00053 35664 3 Skin 0.30 protein_coding synonymous_variant LOW 1692A>C Ile564Ile
M0109985 PJGPFMIK_00053 35829 3 Skin 0.30 protein_coding missense_variant MODERATE 1857A>T Glu619Asp
M0109986 PJGPFMIK_00054 35844 4 Skin 0.40 protein_coding missense_variant MODERATE 10C>A Gln4Lys
M0109987 PJGPFMIK_00054 35969 4 Skin 0.40 protein_coding missense_variant MODERATE 135C>A Asn45Lys
M0109988 PJGPFMIK_00054 35970 4 Skin 0.40 protein_coding missense_variant MODERATE 136G>A Glu46Lys
M0109989 PJGPFMIK_00054 35972 4 Skin 0.40 protein_coding synonymous_variant LOW 138A>G Glu46Glu
M0109990 PJGPFMIK_00054 36074 3 Skin 0.30 protein_coding synonymous_variant LOW 240G>A Leu80Leu
M0109991 PJGPFMIK_00054 36111 3 Skin 0.30 protein_coding synonymous_variant LOW 277T>C Leu93Leu
M0109992 PJGPFMIK_00053 34752 3 Skin 0.30 protein_coding synonymous_variant LOW 780T>C Asn260Asn
M0109993 PJGPFMIK_00053 34791 3 Skin 0.30 protein_coding synonymous_variant LOW 819A>G Lys273Lys
M0109994 PJGPFMIK_00053 34812 3 Skin 0.30 protein_coding synonymous_variant LOW 840A>T Pro280Pro
M0109995 PJGPFMIK_00053 34833 3 Skin 0.30 protein_coding synonymous_variant LOW 861C>T Gly287Gly
M0109996 PJGPFMIK_00053 34874 3 Skin 0.30 protein_coding missense_variant MODERATE 902A>G Asn301Ser
M0109997 PJGPFMIK_00053 34902 3 Skin 0.30 protein_coding synonymous_variant LOW 930A>T Thr310Thr
M0109998 PJGPFMIK_00053 34911 3 Skin 0.30 protein_coding synonymous_variant LOW 939G>A Leu313Leu
M0109999 PJGPFMIK_00053 34926 3 Skin 0.30 protein_coding synonymous_variant LOW 954C>T Ile318Ile
M0110000 PJGPFMIK_00053 34965 3 Skin 0.30 protein_coding synonymous_variant LOW 993A>T Arg331Arg
M0110001 PJGPFMIK_00053 34998 3 Skin 0.30 protein_coding missense_variant MODERATE 1026A>T Gln342His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term