Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1146
  Reference Plasmid   NZ_CP121511.1
  Reference Plasmid Size   30308
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0110295 MDJGNMIA_00007 8579 4 Skin 0.13 protein_coding missense_variant MODERATE 1670C>T Thr557Met
M0110296 MDJGNMIA_00015 20414 3 Skin 0.09 protein_coding synonymous_variant LOW 618A>G Lys206Lys
M0110297 MDJGNMIA_00015 20453 3 Skin 0.09 protein_coding synonymous_variant LOW 657C>T Ile219Ile
M0110298 MDJGNMIA_00015 20495 3 Skin 0.09 protein_coding synonymous_variant LOW 699G>A Glu233Glu
M0110299 MDJGNMIA_00015 20498 3 Skin 0.09 protein_coding synonymous_variant LOW 702A>G Arg234Arg
M0110300 MDJGNMIA_00011 20763 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4898T>G None
M0110301 MDJGNMIA_00016 21495 3 Skin 0.09 protein_coding synonymous_variant LOW 222G>A Lys74Lys
M0110302 MDJGNMIA_00013 21781 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4788G>A None
M0110303 MDJGNMIA_00017 22443 3 Skin 0.09 protein_coding synonymous_variant LOW 762A>G Lys254Lys
M0110304 MDJGNMIA_00017 22836 3 Skin 0.09 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0110305 MDJGNMIA_00017 23001 3 Skin 0.09 protein_coding synonymous_variant LOW 204G>A Gly68Gly
M0110306 MDJGNMIA_00017 23058 3 Skin 0.09 protein_coding synonymous_variant LOW 147A>G Gly49Gly
M0110307 MDJGNMIA_00018 23285 3 Skin 0.09 protein_coding synonymous_variant LOW 2118T>C Val706Val
M0110308 MDJGNMIA_00018 23574 4 Skin 0.13 protein_coding missense_variant MODERATE 1829A>G Asn610Ser
M0110309 MDJGNMIA_00018 23606 4 Skin 0.13 protein_coding synonymous_variant LOW 1797G>A Glu599Glu
M0110310 MDJGNMIA_00018 23733 6 Skin 0.19 protein_coding missense_variant MODERATE 1670C>T Thr557Met
M0110311 MDJGNMIA_00006 7105 4 Skin 0.13 protein_coding missense_variant MODERATE 946A>G Ser316Gly
M0110312 MDJGNMIA_00006 7106 4 Skin 0.13 protein_coding synonymous_variant LOW 945T>C Ile315Ile
M0110313 MDJGNMIA_00006 7289 4 Skin 0.13 protein_coding synonymous_variant LOW 762A>G Lys254Lys
M0110314 MDJGNMIA_00006 7603 4 Skin 0.13 protein_coding missense_variant MODERATE 448T>G Phe150Val
M0110315 MDJGNMIA_00006 7682 4 Skin 0.13 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0110316 MDJGNMIA_00006 7847 4 Skin 0.13 protein_coding synonymous_variant LOW 204G>A Gly68Gly
M0110317 MDJGNMIA_00006 7904 4 Skin 0.13 protein_coding synonymous_variant LOW 147A>G Gly49Gly
M0110318 MDJGNMIA_00007 8131 4 Skin 0.13 protein_coding synonymous_variant LOW 2118T>C Val706Val
M0110319 MDJGNMIA_00007 8420 4 Skin 0.13 protein_coding missense_variant MODERATE 1829A>G Asn610Ser
M0110320 MDJGNMIA_00007 10199 3 Skin 0.09 protein_coding missense_variant MODERATE 50G>A Ser17Asn
M0110321 MDJGNMIA_00005 10342 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3780A>G None
M0110322 MDJGNMIA_00005 10344 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3782G>A None
M0110323 MDJGNMIA_00005 10373 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3811A>G None
M0110324 MDJGNMIA_00005 10404 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3842T>G None
M0110325 MDJGNMIA_00005 10439 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3877T>C None
M0110326 MDJGNMIA_00005 10443 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3881A>C None
M0110327 MDJGNMIA_00005 10468 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3906G>A None
M0110328 MDJGNMIA_00005 10472 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3910A>C None
M0110329 MDJGNMIA_00005 10476 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3914T>C None
M0110330 MDJGNMIA_00005 10479 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3917T>C None
M0110331 MDJGNMIA_00005 10490 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3928T>A None
M0110332 MDJGNMIA_00005 10517 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3955T>C None
M0110333 MDJGNMIA_00010 13560 4 Skin 0.13 protein_coding synonymous_variant LOW 261T>C Gly87Gly
M0110334 MDJGNMIA_00011 14508 6 Skin 0.19 protein_coding missense_variant MODERATE 1358T>C Ile453Thr
M0110335 MDJGNMIA_00011 15476 4 Skin 0.13 protein_coding synonymous_variant LOW 390A>G Gly130Gly
M0110336 MDJGNMIA_00011 15589 5 Skin 0.16 protein_coding missense_variant MODERATE 277A>C Lys93Gln
M0110337 MDJGNMIA_00011 15827 3 Skin 0.09 protein_coding synonymous_variant LOW 39A>G Thr13Thr
M0110338 MDJGNMIA_00008 15915 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3672T>A None
M0110339 MDJGNMIA_00008 15917 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3674T>C None
M0110340 MDJGNMIA_00008 15918 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3675G>T None
M0110341 MDJGNMIA_00008 16410 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4167G>A None
M0110342 MDJGNMIA_00008 15909 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3666A>C None
M0110343 MDJGNMIA_00008 15910 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3667G>A None
M0110344 MDJGNMIA_00008 15912 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3669T>A None
M0110345 MDJGNMIA_00018 24407 3 Skin 0.09 protein_coding synonymous_variant LOW 996T>C Ile332Ile
M0110346 MDJGNMIA_00018 24797 3 Skin 0.09 protein_coding synonymous_variant LOW 606C>T Asn202Asn
M0110347 MDJGNMIA_00016 20938 3 Skin 0.09 protein_coding missense_variant MODERATE 779A>G Lys260Arg
M0110348 MDJGNMIA_00016 20973 3 Skin 0.09 protein_coding synonymous_variant LOW 744G>A Gln248Gln
M0110349 MDJGNMIA_00016 20991 3 Skin 0.09 protein_coding synonymous_variant LOW 726G>A Arg242Arg
M0110350 MDJGNMIA_00016 21030 3 Skin 0.09 protein_coding synonymous_variant LOW 687G>A Lys229Lys
M0110351 MDJGNMIA_00007 8452 3 Skin 0.09 protein_coding synonymous_variant LOW 1797G>A Glu599Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term