Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1149
  Reference Plasmid   NZ_CP121530.1
  Reference Plasmid Size   50048
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0112336 PBBCPAEO_00042 44220 3 Skin 0.03 protein_coding missense_variant MODERATE 325T>G Tyr109Asp
M0112337 PBBCPAEO_00034 38418 11 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4398G>A None
M0112338 PBBCPAEO_00039 40486 6 Skin 0.07 protein_coding missense_variant MODERATE 258A>C Arg86Ser
M0112339 PBBCPAEO_00039 40550 3 Skin 0.03 protein_coding missense_variant MODERATE 322C>T Pro108Ser
M0112340 PBBCPAEO_00039 40552 7 Skin 0.08 protein_coding synonymous_variant LOW 324A>G Pro108Pro
M0112341 PBBCPAEO_00039 40555 5 Skin 0.06 protein_coding synonymous_variant LOW 327T>G Gly109Gly
M0112342 PBBCPAEO_00039 40565 7 Skin 0.08 protein_coding missense_variant MODERATE 337C>A Gln113Lys
M0112343 PBBCPAEO_00039 40576 7 Skin 0.08 protein_coding synonymous_variant LOW 348A>G Val116Val
M0112344 PBBCPAEO_00040 40992 9 Skin 0.10 protein_coding missense_variant MODERATE 277A>C Lys93Gln
M0112345 PBBCPAEO_00040 41049 10 Skin 0.11 protein_coding missense_variant MODERATE 334C>G Gln112Glu
M0112346 PBBCPAEO_00040 41059 10 Skin 0.11 protein_coding missense_variant MODERATE 344G>C Arg115Thr
M0112347 PBBCPAEO_00040 41348 11 Skin 0.13 protein_coding missense_variant MODERATE 633A>G Ile211Met
M0112348 PBBCPAEO_00040 41352 12 Skin 0.14 protein_coding missense_variant MODERATE 637T>G Tyr213Asp
M0112349 PBBCPAEO_00040 41385 10 Skin 0.11 protein_coding synonymous_variant LOW 670T>C Leu224Leu
M0112350 PBBCPAEO_00040 41535 3 Skin 0.03 protein_coding missense_variant MODERATE 820G>A Asp274Asn
M0112351 PBBCPAEO_00040 41885 3 Skin 0.03 protein_coding synonymous_variant LOW 1170G>A Glu390Glu
M0112352 PBBCPAEO_00040 41978 3 Skin 0.03 protein_coding synonymous_variant LOW 1263T>C Asp421Asp
M0112353 PBBCPAEO_00040 42163 4 Skin 0.05 protein_coding missense_variant MODERATE 1448A>G Asn483Ser
M0112354 PBBCPAEO_00040 42522 3 Skin 0.03 protein_coding missense_variant MODERATE 1807C>T His603Tyr
M0112355 PBBCPAEO_00040 42735 10 Skin 0.11 protein_coding missense_variant MODERATE 2020A>G Thr674Ala
M0112356 PBBCPAEO_00041 42956 8 Skin 0.09 protein_coding missense_variant MODERATE 196A>G Thr66Ala
M0112357 PBBCPAEO_00041 43047 8 Skin 0.09 protein_coding missense_variant MODERATE 287A>C Glu96Ala
M0112358 PBBCPAEO_00041 43099 9 Skin 0.10 protein_coding synonymous_variant LOW 339T>C Ile113Ile
M0112359 PBBCPAEO_00041 43333 4 Skin 0.05 protein_coding synonymous_variant LOW 573T>C Ser191Ser
M0112360 PBBCPAEO_00041 43363 5 Skin 0.06 protein_coding synonymous_variant LOW 603A>G Leu201Leu
M0112361 PBBCPAEO_00036 37972 3 Skin 0.03 protein_coding synonymous_variant LOW 252C>T Asn84Asn
M0112362 PBBCPAEO_00036 38114 4 Skin 0.05 protein_coding missense_variant MODERATE 110T>C Phe37Ser
M0112363 PBBCPAEO_00036 38149 4 Skin 0.05 protein_coding missense_variant MODERATE 75T>G Ile25Met
M0112364 PBBCPAEO_00036 38192 4 Skin 0.05 protein_coding missense_variant MODERATE 32A>G Asp11Gly
M0112365 PBBCPAEO_00034 38353 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4333T>G None
M0112366 PBBCPAEO_00034 38442 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4422T>C None
M0112367 PBBCPAEO_00034 38450 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4430T>A None
M0112368 PBBCPAEO_00034 38456 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4436G>A None
M0112369 PBBCPAEO_00037 38516 4 Skin 0.05 protein_coding missense_variant MODERATE 20T>C Ile7Thr
M0112370 PBBCPAEO_00037 38520 5 Skin 0.06 protein_coding synonymous_variant LOW 24A>G Lys8Lys
M0112371 PBBCPAEO_00038 39050 7 Skin 0.08 protein_coding missense_variant MODERATE 281G>A Arg94Lys
M0112372 PBBCPAEO_00038 39140 6 Skin 0.07 protein_coding missense_variant MODERATE 371A>C Asn124Thr
M0112373 PBBCPAEO_00038 39519 7 Skin 0.08 protein_coding missense_variant MODERATE 750T>G Asp250Glu
M0112374 PBBCPAEO_00038 39931 4 Skin 0.05 protein_coding missense_variant MODERATE 1162A>G Thr388Ala
M0112375 PBBCPAEO_00035 40044 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4136T>C None
M0112376 PBBCPAEO_00035 40173 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4265T>A None
M0112377 PBBCPAEO_00035 40216 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4308T>C None
M0112378 PBBCPAEO_00039 40237 5 Skin 0.06 protein_coding synonymous_variant LOW 9G>A Lys3Lys
M0112379 PBBCPAEO_00035 40662 9 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4754A>C None
M0112380 PBBCPAEO_00035 40663 9 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4755G>A None
M0112381 PBBCPAEO_00035 40665 9 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4757T>A None
M0112382 PBBCPAEO_00035 40668 11 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4760T>A None
M0112383 PBBCPAEO_00035 40670 11 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4762T>C None
M0112384 PBBCPAEO_00035 40671 11 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4763G>T None
M0112385 PBBCPAEO_00040 41510 3 Skin 0.03 protein_coding synonymous_variant LOW 795C>A Ile265Ile
M0112386 PBBCPAEO_00040 41636 6 Skin 0.07 protein_coding synonymous_variant LOW 921C>T His307His
M0112387 PBBCPAEO_00040 41851 5 Skin 0.06 protein_coding missense_variant MODERATE 1136A>G Asp379Gly
M0112388 PBBCPAEO_00040 42092 3 Skin 0.03 protein_coding synonymous_variant LOW 1377A>G Lys459Lys
M0112389 PBBCPAEO_00035 40692 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4784A>T None
M0112390 PBBCPAEO_00033 32285 3 Skin 0.03 protein_coding missense_variant MODERATE 169A>G Arg57Gly
M0112391 PBBCPAEO_00018 20771 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4554C>T None
M0112392 PBBCPAEO_00026 21024 6 Skin 0.07 protein_coding missense_variant MODERATE 169G>A Ala57Thr
M0112393 PBBCPAEO_00026 21104 4 Skin 0.05 protein_coding synonymous_variant LOW 249C>A Ser83Ser
M0112394 PBBCPAEO_00014 19448 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4836G>A None
M0112395 PBBCPAEO_00014 19474 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4862T>C None
M0112396 PBBCPAEO_00025 19922 5 Skin 0.06 protein_coding missense_variant MODERATE 502A>G Asn168Asp
M0112397 PBBCPAEO_00026 21036 5 Skin 0.06 protein_coding missense_variant MODERATE 181A>G Lys61Glu
M0112398 PBBCPAEO_00026 21388 4 Skin 0.05 protein_coding missense_variant MODERATE 533T>C Leu178Pro
M0112399 PBBCPAEO_00021 21652 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3997A>T None
M0112400 PBBCPAEO_00021 21653 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3998T>A None
M0112401 PBBCPAEO_00021 21654 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3999A>T None
M0112402 PBBCPAEO_00035 34292 3 Skin 0.03 protein_coding synonymous_variant LOW 1617A>G Glu539Glu
M0112403 PBBCPAEO_00033 35963 15 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3510T>C None
M0112404 PBBCPAEO_00034 33031 7 Skin 0.08 protein_coding synonymous_variant LOW 990A>G Glu330Glu
M0112405 PBBCPAEO_00034 33886 6 Skin 0.07 protein_coding synonymous_variant LOW 135G>C Leu45Leu
M0112406 PBBCPAEO_00035 34116 5 Skin 0.06 protein_coding missense_variant MODERATE 1793C>T Thr598Ile
M0112407 PBBCPAEO_00035 35630 7 Skin 0.08 protein_coding synonymous_variant LOW 279A>G Gly93Gly
M0112408 PBBCPAEO_00033 36246 7 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3793G>T None
M0112409 PBBCPAEO_00033 36259 7 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3806T>G None
M0112410 PBBCPAEO_00033 36281 7 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3828T>A None
M0112411 PBBCPAEO_00045 47166 3 Skin 0.03 protein_coding synonymous_variant LOW 36T>C Asn12Asn
M0112412 PBBCPAEO_00045 47232 3 Skin 0.03 protein_coding synonymous_variant LOW 102C>T Phe34Phe
M0112413 PBBCPAEO_00045 47310 5 Skin 0.06 protein_coding synonymous_variant LOW 180T>C Cys60Cys
M0112414 PBBCPAEO_00045 47322 3 Skin 0.03 protein_coding synonymous_variant LOW 192T>C Gly64Gly
M0112415 PBBCPAEO_00045 47435 4 Skin 0.05 protein_coding missense_variant MODERATE 305C>T Ala102Val
M0112416 PBBCPAEO_00045 47472 4 Skin 0.05 protein_coding synonymous_variant LOW 342T>A Ile114Ile
M0112417 PBBCPAEO_00042 47494 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2950G>A None
M0112418 PBBCPAEO_00042 47505 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2961T>A None
M0112419 PBBCPAEO_00042 47506 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2962T>C None
M0112420 PBBCPAEO_00042 47517 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2973A>G None
M0112421 PBBCPAEO_00042 47525 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2981T>A None
M0112422 PBBCPAEO_00042 47540 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2996T>C None
M0112423 PBBCPAEO_00042 47571 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3027C>T None
M0112424 PBBCPAEO_00042 47585 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3041C>T None
M0112425 PBBCPAEO_00042 47594 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3050A>G None
M0112426 PBBCPAEO_00042 47602 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3058G>A None
M0112427 PBBCPAEO_00046 47647 4 Skin 0.05 protein_coding missense_variant MODERATE 116A>G His39Arg
M0112428 PBBCPAEO_00046 47650 4 Skin 0.05 protein_coding missense_variant MODERATE 113A>G Tyr38Cys
M0112429 PBBCPAEO_00046 47653 4 Skin 0.05 protein_coding missense_variant MODERATE 110T>C Ile37Thr
M0112430 PBBCPAEO_00046 47668 4 Skin 0.05 protein_coding missense_variant MODERATE 95C>T Ser32Leu
M0112431 PBBCPAEO_00046 47677 4 Skin 0.05 protein_coding missense_variant MODERATE 86C>G Thr29Arg
M0112432 PBBCPAEO_00042 47904 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3360A>G None
M0112433 PBBCPAEO_00028 25908 3 Skin 0.03 protein_coding synonymous_variant LOW 2154C>T Leu718Leu
M0112434 PBBCPAEO_00028 26427 3 Skin 0.03 protein_coding synonymous_variant LOW 2673G>A Leu891Leu
M0112435 PBBCPAEO_00028 26465 3 Skin 0.03 protein_coding missense_variant MODERATE 2711G>A Ser904Asn
M0112436 PBBCPAEO_00028 26652 3 Skin 0.03 protein_coding synonymous_variant LOW 2898A>G Pro966Pro
M0112437 PBBCPAEO_00033 35918 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3465G>A None
M0112438 PBBCPAEO_00047 49173 4 Skin 0.05 protein_coding missense_variant MODERATE 83T>C Val28Ala
M0112439 PBBCPAEO_00048 49325 3 Skin 0.03 protein_coding synonymous_variant LOW 684T>C Asn228Asn
M0112440 PBBCPAEO_00048 49355 3 Skin 0.03 protein_coding synonymous_variant LOW 654T>C Phe218Phe
M0112441 PBBCPAEO_00048 49370 3 Skin 0.03 protein_coding synonymous_variant LOW 639A>G Ala213Ala
M0112442 PBBCPAEO_00048 49622 3 Skin 0.03 protein_coding synonymous_variant LOW 387T>G Gly129Gly
M0112443 PBBCPAEO_00048 49673 3 Skin 0.03 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0112444 PBBCPAEO_00034 38283 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4263C>T None
M0112445 PBBCPAEO_00040 41475 3 Skin 0.03 protein_coding missense_variant MODERATE 760G>C Val254Leu
M0112446 PBBCPAEO_00040 41872 3 Skin 0.03 protein_coding missense_variant MODERATE 1157A>T Lys386Ile
M0112447 PBBCPAEO_00033 36783 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4330A>G None
M0112448 PBBCPAEO_00033 36792 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4339C>T None
M0112449 PBBCPAEO_00033 36805 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4352T>C None
M0112450 PBBCPAEO_00033 36925 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4472T>C None
M0112451 PBBCPAEO_00036 36942 4 Skin 0.05 protein_coding stop_lost&splice_region_variant HIGH 1282T>G Ter428Gluext*?
M0112452 PBBCPAEO_00032 30130 6 Skin 0.07 protein_coding synonymous_variant LOW 624A>G Gly208Gly
M0112453 PBBCPAEO_00032 30634 8 Skin 0.09 protein_coding synonymous_variant LOW 120C>G Thr40Thr
M0112454 PBBCPAEO_00032 30646 7 Skin 0.08 protein_coding synonymous_variant LOW 108G>A Gly36Gly
M0112455 PBBCPAEO_00029 29467 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1908C>A None
M0112456 PBBCPAEO_00045 47307 4 Skin 0.05 protein_coding synonymous_variant LOW 177C>T Ile59Ile
M0112457 PBBCPAEO_00033 36173 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3720T>A None
M0112458 PBBCPAEO_00005 5463 5 Skin 0.06 protein_coding missense_variant MODERATE 199C>G His67Asp
M0112459 PBBCPAEO_00006 5588 5 Skin 0.06 protein_coding missense_variant MODERATE 167T>C Phe56Ser
M0112460 PBBCPAEO_00037 38664 3 Skin 0.03 protein_coding synonymous_variant LOW 168T>C Ile56Ile
M0112461 PBBCPAEO_00039 40287 4 Skin 0.05 protein_coding missense_variant MODERATE 59C>T Thr20Ile
M0112462 PBBCPAEO_00039 40319 4 Skin 0.05 protein_coding missense_variant MODERATE 91G>A Ala31Thr
M0112463 PBBCPAEO_00039 40338 4 Skin 0.05 protein_coding missense_variant MODERATE 110A>G Asn37Ser
M0112464 PBBCPAEO_00033 32345 4 Skin 0.05 protein_coding missense_variant MODERATE 109T>C Ser37Pro
M0112465 PBBCPAEO_00001 1280 3 Skin 0.03 protein_coding synonymous_variant LOW 210T>C His70His
M0112466 PBBCPAEO_00002 2076 3 Skin 0.03 protein_coding synonymous_variant LOW 486C>A Gly162Gly
M0112467 PBBCPAEO_00002 2298 3 Skin 0.03 protein_coding missense_variant MODERATE 708G>T Leu236Phe
M0112468 PBBCPAEO_00002 2388 3 Skin 0.03 protein_coding synonymous_variant LOW 798T>C Val266Val
M0112469 PBBCPAEO_00002 2389 3 Skin 0.03 protein_coding synonymous_variant LOW 799T>C Leu267Leu
M0112470 PBBCPAEO_00002 2419 3 Skin 0.03 protein_coding missense_variant MODERATE 829A>G Ile277Val
M0112471 PBBCPAEO_00002 2420 3 Skin 0.03 protein_coding missense_variant MODERATE 830T>C Ile277Thr
M0112472 PBBCPAEO_00002 2628 3 Skin 0.03 protein_coding synonymous_variant LOW 1038C>T Asp346Asp
M0112473 PBBCPAEO_00002 2644 3 Skin 0.03 protein_coding missense_variant MODERATE 1054G>A Asp352Asn
M0112474 PBBCPAEO_00002 3184 3 Skin 0.03 protein_coding missense_variant MODERATE 1594A>G Thr532Ala
M0112475 PBBCPAEO_00003 3715 3 Skin 0.03 protein_coding synonymous_variant LOW 453A>T Ile151Ile
M0112476 PBBCPAEO_00003 3784 4 Skin 0.05 protein_coding synonymous_variant LOW 522G>A Lys174Lys
M0112477 PBBCPAEO_00041 43255 3 Skin 0.03 protein_coding synonymous_variant LOW 495G>A Glu165Glu
M0112478 PBBCPAEO_00033 36444 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3991A>G None
M0112479 PBBCPAEO_00033 36498 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4045A>G None
M0112480 PBBCPAEO_00033 36518 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4065T>C None
M0112481 PBBCPAEO_00033 36531 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4078G>A None
M0112482 PBBCPAEO_00033 36534 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4081T>A None
M0112483 PBBCPAEO_00033 36573 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4120C>A None
M0112484 PBBCPAEO_00041 42914 3 Skin 0.03 protein_coding missense_variant MODERATE 154A>G Thr52Ala
M0112485 PBBCPAEO_00040 41226 3 Skin 0.03 protein_coding missense_variant MODERATE 511G>A Val171Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
PBBCPAEO_00009 PHI:6324 StpC 70.3 1.2e-86 1 229 1.0000 0.9913 birds skin infection; food poisoning; respiratory disease cysteine protease unaffected pathogenicity
JGGCICFE_00009 PHI:6324 StpC 70.3 1.2e-86 1 229 1.0000 0.9913 birds skin infection; food poisoning; respiratory disease cysteine protease unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PBBCPAEO_00031 CCO10203.2|GH1 87.3 2.72e-207 1 330 0.991 0.8462
PBBCPAEO_00048 QGY86786.1|GH46 98.8 7.9e-176 1 245 1 0.7447
JGGCICFE_00031 CCO10203.2|GH1 87.3 2.72e-207 1 330 0.991 0.8462
JGGCICFE_00048 QGY86786.1|GH46 98.8 7.9e-176 1 245 1 0.7447





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term