Cluster Information | Plasmid Cluster ID | C1151 |
Reference Plasmid | NZ_CP122631.1 | |
Reference Plasmid Size | 110098 | |
Reference Plasmid GC Content | 0.52 | |
Reference Plasmid Mobility Type | conjugative |
mutid | gname | pos | count | tissue | frequnt | biotype | consequence | impact | nucchange | aachange |
---|---|---|---|---|---|---|---|---|---|---|
M0197983 | POCHIBCK_00084 | 80727 | 9 | Gut | 0.82 | protein_coding | missense_variant | MODERATE | 238A>G | Lys80Glu |
Gene Name | vf_gene_id | vf_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | vf_category | gene_description | condition |
---|---|---|---|---|---|---|---|---|---|---|---|
POCHIBCK_00088 | VFG043980 | Colicin Ib | 99.7 | 0 | 1 | 626 | 1.0 | 1 | Exotoxin | colicin-like pore-forming protein | prediction |
POCHIBCK_00095 | VFG017870 | Icm/dot type IVB locus | 77.9 | 1e-89 | 1 | 208 | 0.9905 | 0.9952 | Effector delivery system | ParA family protein | prediction |
Gene Name | compound | identity | evalue | qstart | qend | query_coverage | subject_coverage | group |
---|---|---|---|---|---|---|---|---|
POCHIBCK_00066 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] | 100 | 1.1e-60 | 1 | 115 | 1.0000 | 1.0000 | experiment |
Gene Name | aro_accession | identity | evalue | qstart | qend | query_coverage | subject_coverage | drug_class | amr_gene_family | resistance_mechanism |
---|---|---|---|---|---|---|---|---|---|---|
POCHIBCK_00065 | ARO:3000410 | 100 | 2.94e-199 | 1 | 279 | 1.0000 | 1.0000 | sulfonamide antibiotic | sulfonamide resistant sul | antibiotic target replacement |
POCHIBCK_00066 | ARO:3005010 | 100 | 2.01e-78 | 1 | 115 | 1.0000 | 1.0000 | disinfecting agents and antiseptics | major facilitator superfamily (MFS) antibiotic efflux pump | antibiotic efflux |
POCHIBCK_00067 | ARO:3002601 | 99.2 | 2.68e-186 | 1 | 259 | 1.0000 | 0.9848 | aminoglycoside antibiotic | ANT(3'') | antibiotic inactivation |
POCHIBCK_00068 | ARO:3002854 | 100 | 9.81e-115 | 1 | 157 | 1.0000 | 1.0000 | diaminopyrimidine antibiotic | trimethoprim resistant dihydrofolate reductase dfr | antibiotic target replacement |
POCHIBCK_00070 | ARO:3002660 | 99.6 | 1.07e-205 | 1 | 278 | 1.0000 | 1.0000 | aminoglycoside antibiotic | APH(6) | antibiotic inactivation |
POCHIBCK_00071 | ARO:3002639 | 99.6 | 5.98e-202 | 1 | 267 | 1.0000 | 1.0000 | aminoglycoside antibiotic | APH(3'') | antibiotic inactivation |
POCHIBCK_00072 | ARO:3000412 | 99.6 | 8.29e-186 | 1 | 271 | 1.0000 | 1.0000 | sulfonamide antibiotic | sulfonamide resistant sul | antibiotic target replacement |
POCHIBCK_00076 | ARO:3000873 | 100 | 5.12e-208 | 1 | 286 | 1.0000 | 1.0000 | monobactam | TEM beta-lactamase | antibiotic inactivation |
Gene Name | phi_molconn_id | host gene_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | host_descripton | disease_name | function | phenotype_of_mutant |
---|---|---|---|---|---|---|---|---|---|---|---|---|
POCHIBCK_00069 | PHI:9804 | int | 100 | 4.4e-14 | 1 | 37 | 0.0995 | 1.0000 | rodents | gastroenteritis | integrase | reduced virulence |
Gene Name | cazy_id | identity | evalue | qstart | qend | query_coverage | subject_coverage |
---|---|---|---|---|---|---|---|
POCHIBCK_00039 | AHF22950.1|GH23 | 100 | 5.89e-138 | 1 | 186 | 1 | 1 |
Gene Name | tcid | identity | evalue | qstart | qend | query_coverage | subject_coverage | class_field | class_term | subclass | subclass_term | family | family_term |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
POCHIBCK_00002 | 3.A.7.10.1 | 100 | 0 | 1 | 763 | 1.0000 | 7.9479 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00003 | 3.A.7.10.1 | 99.7 | 1.2e-207 | 1 | 356 | 1.0000 | 3.7083 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00004 | 3.A.7.10.1 | 99.8 | 1.2e-243 | 1 | 402 | 1.0000 | 4.1875 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00005 | 1.E.53.1.10 | 88.4 | 5.3e-16 | 8 | 50 | 0.8600 | 1.0000 | 1 | Channels/Pores | 1.E | Holins | 1.E.53 | The Toxic Hok/Gef Protein (Hok/Gef) Family |
POCHIBCK_00010 | 9.B.40.1.2 | 92.1 | 0 | 1 | 720 | 1.0000 | 0.9691 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.40 | The DotA/TraY (DotA/TraY) Family |
POCHIBCK_00023 | 3.A.7.10.1 | 100 | 6.1e-185 | 1 | 327 | 1.0000 | 3.4063 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00024 | 3.A.7.10.1 | 99.6 | 4.3e-129 | 1 | 230 | 1.0000 | 2.3958 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00025 | 3.A.7.10.1 | 100 | 1.3e-57 | 1 | 115 | 1.0000 | 1.1979 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00028 | 3.A.7.10.1 | 99 | 4.6e-56 | 1 | 96 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00029 | 3.A.7.10.1 | 100 | 3.3e-222 | 1 | 382 | 1.0000 | 3.9792 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00030 | 3.A.7.10.1 | 100 | 5.6e-160 | 1 | 272 | 1.0000 | 2.8333 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00031 | 3.A.7.10.1 | 100 | 6e-87 | 1 | 152 | 1.0000 | 1.5833 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
POCHIBCK_00088 | 1.C.1.1.2 | 98.7 | 0 | 1 | 626 | 1.0000 | 1.0000 | 1 | Channels/Pores | 1.C | Pore-Forming Toxins (Proteins and Peptides) | 1.C.1 | The Channel-forming Colicin (Colicin) Family |
POCHIBCK_00089 | 8.B.24.2.1 | 99.1 | 3.2e-56 | 1 | 110 | 0.9565 | 0.8661 | 8 | Accessory Factors Involved in Transport | 8.B | Ribosomally synthesized protein/peptide toxins/agonists that target channels and carriers | 8.B.24 | The Colicin Immunity Protein (ColIP) Functional Family |