Cluster Information | Plasmid Cluster ID | C1152 |
Reference Plasmid | NZ_CP122654.1 | |
Reference Plasmid Size | 109222 | |
Reference Plasmid GC Content | 0.51 | |
Reference Plasmid Mobility Type | conjugative |
mutid | gname | pos | count | tissue | frequnt | biotype | consequence | impact | nucchange | aachange |
---|---|---|---|---|---|---|---|---|---|---|
M0197984 | NNBMLDCA_00021 | 21569 | 12 | Gut | 0.09 | protein_coding | missense_variant | MODERATE | 415A>T | Ser139Cys |
M0197985 | NNBMLDCA_00033 | 38688 | 4 | Gut | 0.03 | protein_coding | upstream_gene_variant | MODIFIER | -4557T>A | None |
M0197986 | NNBMLDCA_00033 | 38693 | 4 | Gut | 0.03 | protein_coding | upstream_gene_variant | MODIFIER | -4562T>G | None |
M0197987 | NNBMLDCA_00002 | 1407 | 58 | Gut | 0.42 | protein_coding | upstream_gene_variant | MODIFIER | -131T>G | None |
M0197988 | NNBMLDCA_00033 | 38185 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -4054A>T | None |
M0197989 | NNBMLDCA_00033 | 38192 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -4061G>T | None |
M0197990 | NNBMLDCA_00001 | 825 | 5 | Gut | 0.04 | protein_coding | synonymous_variant | LOW | 825A>T | Pro275Pro |
M0197991 | NNBMLDCA_00007 | 8189 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 975C>T | Gly325Gly |
M0197992 | NNBMLDCA_00001 | 424 | 8 | Gut | 0.06 | protein_coding | missense_variant | MODERATE | 424T>A | Cys142Ser |
M0197993 | NNBMLDCA_00104 | 95916 | 4 | Gut | 0.03 | protein_coding | synonymous_variant | LOW | 342C>T | Cys114Cys |
M0197994 | NNBMLDCA_00092 | 87432 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 6C>T | Thr2Thr |
M0197995 | NNBMLDCA_00001 | 438 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 438A>G | Thr146Thr |
M0197996 | NNBMLDCA_00001 | 513 | 4 | Gut | 0.03 | protein_coding | synonymous_variant | LOW | 513T>C | Gly171Gly |
M0197997 | NNBMLDCA_00120 | 105055 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 332T>A | Phe111Tyr |
M0197998 | NNBMLDCA_00120 | 105056 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 333T>A | Phe111Leu |
M0197999 | NNBMLDCA_00120 | 105057 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 334T>G | Tyr112Asp |
M0198000 | NNBMLDCA_00124 | 107972 | 5 | Gut | 0.04 | protein_coding | synonymous_variant | LOW | 771G>A | Glu257Glu |
M0198001 | NNBMLDCA_00126 | 108400 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 244G>A | Asp82Asn |
M0198002 | NNBMLDCA_00126 | 108402 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 242A>G | Glu81Gly |
M0198003 | NNBMLDCA_00001 | 522 | 6 | Gut | 0.04 | protein_coding | synonymous_variant | LOW | 522C>A | Ile174Ile |
M0198004 | NNBMLDCA_00001 | 537 | 6 | Gut | 0.04 | protein_coding | synonymous_variant | LOW | 537G>A | Leu179Leu |
M0198005 | NNBMLDCA_00001 | 657 | 5 | Gut | 0.04 | protein_coding | synonymous_variant | LOW | 657T>C | Ser219Ser |
M0198006 | NNBMLDCA_00001 | 693 | 4 | Gut | 0.03 | protein_coding | synonymous_variant | LOW | 693C>T | Gly231Gly |
M0198007 | NNBMLDCA_00125 | 108142 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -61T>A | None |
M0198008 | NNBMLDCA_00125 | 108143 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -60A>G | None |
M0198009 | NNBMLDCA_00125 | 108147 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -56A>C | None |
M0198010 | NNBMLDCA_00125 | 108148 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -55T>A | None |
M0198011 | NNBMLDCA_00125 | 108151 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -52C>A | None |
M0198012 | NNBMLDCA_00125 | 108199 | 3 | Gut | 0.02 | protein_coding | upstream_gene_variant | MODIFIER | -4T>C | None |
M0198013 | NNBMLDCA_00001 | 66 | 4 | Gut | 0.03 | protein_coding | synonymous_variant | LOW | 66G>A | Val22Val |
M0198014 | NNBMLDCA_00001 | 225 | 5 | Gut | 0.04 | protein_coding | missense_variant | MODERATE | 225A>G | Ile75Met |
M0198015 | NNBMLDCA_00001 | 231 | 4 | Gut | 0.03 | protein_coding | synonymous_variant | LOW | 231A>G | Lys77Lys |
M0198016 | NNBMLDCA_00001 | 232 | 4 | Gut | 0.03 | protein_coding | missense_variant | MODERATE | 232C>A | Pro78Thr |
M0198017 | NNBMLDCA_00001 | 405 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 405A>T | Thr135Thr |
M0198018 | NNBMLDCA_00001 | 408 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 408C>T | Phe136Phe |
M0198019 | NNBMLDCA_00093 | 88000 | 3 | Gut | 0.02 | protein_coding | missense_variant | MODERATE | 383A>C | Glu128Ala |
M0198020 | NNBMLDCA_00093 | 88023 | 3 | Gut | 0.02 | protein_coding | synonymous_variant | LOW | 360T>C | Asp120Asp |
M0198021 | NNBMLDCA_00093 | 88024 | 3 | Gut | 0.02 | protein_coding | missense_variant | MODERATE | 359A>G | Asp120Gly |
Gene Name | vf_gene_id | vf_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | vf_category | gene_description | condition |
---|---|---|---|---|---|---|---|---|---|---|---|
NNBMLDCA_00090 | VFG043980 | Colicin Ib | 99.7 | 0 | 1 | 626 | 1.0 | 1 | Exotoxin | colicin-like pore-forming protein | prediction |
NNBMLDCA_00097 | VFG017870 | Icm/dot type IVB locus | 77.9 | 1e-89 | 1 | 208 | 0.9905 | 0.9952 | Effector delivery system | ParA family protein | prediction |
Gene Name | compound | identity | evalue | qstart | qend | query_coverage | subject_coverage | group |
---|---|---|---|---|---|---|---|---|
NNBMLDCA_00068 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] | 100 | 1.1e-60 | 1 | 115 | 1.0000 | 1.0000 | experiment |
Gene Name | aro_accession | identity | evalue | qstart | qend | query_coverage | subject_coverage | drug_class | amr_gene_family | resistance_mechanism |
---|---|---|---|---|---|---|---|---|---|---|
NNBMLDCA_00067 | ARO:3000410 | 100 | 2.94e-199 | 1 | 279 | 1.0000 | 1.0000 | sulfonamide antibiotic | sulfonamide resistant sul | antibiotic target replacement |
NNBMLDCA_00068 | ARO:3005010 | 100 | 2.01e-78 | 1 | 115 | 1.0000 | 1.0000 | disinfecting agents and antiseptics | major facilitator superfamily (MFS) antibiotic efflux pump | antibiotic efflux |
NNBMLDCA_00069 | ARO:3002601 | 99.2 | 2.68e-186 | 1 | 259 | 1.0000 | 0.9848 | aminoglycoside antibiotic | ANT(3'') | antibiotic inactivation |
NNBMLDCA_00070 | ARO:3002854 | 100 | 9.81e-115 | 1 | 157 | 1.0000 | 1.0000 | diaminopyrimidine antibiotic | trimethoprim resistant dihydrofolate reductase dfr | antibiotic target replacement |
NNBMLDCA_00072 | ARO:3002660 | 99.6 | 1.07e-205 | 1 | 278 | 1.0000 | 1.0000 | aminoglycoside antibiotic | APH(6) | antibiotic inactivation |
NNBMLDCA_00073 | ARO:3002639 | 99.6 | 5.98e-202 | 1 | 267 | 1.0000 | 1.0000 | aminoglycoside antibiotic | APH(3'') | antibiotic inactivation |
NNBMLDCA_00074 | ARO:3000412 | 99.6 | 8.29e-186 | 1 | 271 | 1.0000 | 1.0000 | sulfonamide antibiotic | sulfonamide resistant sul | antibiotic target replacement |
NNBMLDCA_00078 | ARO:3000873 | 100 | 5.12e-208 | 1 | 286 | 1.0000 | 1.0000 | monobactam | TEM beta-lactamase | antibiotic inactivation |
Gene Name | phi_molconn_id | host gene_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | host_descripton | disease_name | function | phenotype_of_mutant |
---|---|---|---|---|---|---|---|---|---|---|---|---|
NNBMLDCA_00071 | PHI:9804 | int | 100 | 4.4e-14 | 1 | 37 | 0.0995 | 1.0000 | rodents | gastroenteritis | integrase | reduced virulence |
Gene Name | cazy_id | identity | evalue | qstart | qend | query_coverage | subject_coverage |
---|---|---|---|---|---|---|---|
NNBMLDCA_00039 | AHF22950.1|GH23 | 100 | 5.89e-138 | 1 | 186 | 1 | 1 |
Gene Name | tcid | identity | evalue | qstart | qend | query_coverage | subject_coverage | class_field | class_term | subclass | subclass_term | family | family_term |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NNBMLDCA_00005 | 3.A.7.10.1 | 99.7 | 0 | 1 | 763 | 1.0000 | 7.9479 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00006 | 3.A.7.10.1 | 99.7 | 1.2e-207 | 1 | 356 | 1.0000 | 3.7083 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00007 | 3.A.7.10.1 | 100 | 2.4e-244 | 1 | 402 | 1.0000 | 4.1875 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00013 | 9.B.40.1.2 | 86.9 | 0 | 1 | 722 | 1.0000 | 0.9691 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.40 | The DotA/TraY (DotA/TraY) Family |
NNBMLDCA_00024 | 3.A.7.10.1 | 99.1 | 1.5e-183 | 1 | 327 | 1.0000 | 3.4063 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00025 | 3.A.7.10.1 | 99.6 | 3.3e-129 | 1 | 230 | 1.0000 | 2.3958 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00026 | 3.A.7.10.1 | 100 | 1.3e-57 | 1 | 115 | 1.0000 | 1.1979 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00029 | 3.A.7.10.1 | 99 | 4.6e-56 | 1 | 96 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00030 | 3.A.7.10.1 | 100 | 3.3e-222 | 1 | 382 | 1.0000 | 3.9792 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00031 | 3.A.7.10.1 | 99.6 | 7.3e-160 | 1 | 272 | 1.0000 | 2.8333 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00032 | 3.A.7.10.1 | 100 | 6e-87 | 1 | 152 | 1.0000 | 1.5833 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.7 | The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family |
NNBMLDCA_00090 | 1.C.1.1.2 | 98.7 | 0 | 1 | 626 | 1.0000 | 1.0000 | 1 | Channels/Pores | 1.C | Pore-Forming Toxins (Proteins and Peptides) | 1.C.1 | The Channel-forming Colicin (Colicin) Family |
NNBMLDCA_00091 | 8.B.24.2.1 | 99.1 | 3.2e-56 | 1 | 110 | 0.9565 | 0.8661 | 8 | Accessory Factors Involved in Transport | 8.B | Ribosomally synthesized protein/peptide toxins/agonists that target channels and carriers | 8.B.24 | The Colicin Immunity Protein (ColIP) Functional Family |