Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1156
  Reference Plasmid   NZ_CP123917.1
  Reference Plasmid Size   5594
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0112486 HJMHJPPO_00003 4111 3 Skin 0.30 protein_coding missense_variant MODERATE 1201A>G Ile401Val
M0112487 HJMHJPPO_00003 4799 3 Skin 0.30 protein_coding synonymous_variant LOW 513A>C Thr171Thr
M0112488 HJMHJPPO_00003 4800 3 Skin 0.30 protein_coding missense_variant MODERATE 512C>G Thr171Arg
M0112489 HJMHJPPO_00003 4250 3 Skin 0.30 protein_coding synonymous_variant LOW 1062A>G Thr354Thr
M0112490 HJMHJPPO_00003 4375 3 Skin 0.30 protein_coding synonymous_variant LOW 937T>C Leu313Leu
M0112491 HJMHJPPO_00003 4382 3 Skin 0.30 protein_coding synonymous_variant LOW 930A>G Val310Val
M0112492 HJMHJPPO_00003 4409 3 Skin 0.30 protein_coding synonymous_variant LOW 903C>T Ala301Ala
M0112493 HJMHJPPO_00003 4415 3 Skin 0.30 protein_coding synonymous_variant LOW 897C>G Arg299Arg
M0112494 HJMHJPPO_00003 4418 3 Skin 0.30 protein_coding synonymous_variant LOW 894C>T Leu298Leu
M0112495 HJMHJPPO_00003 4445 3 Skin 0.30 protein_coding synonymous_variant LOW 867G>T Ser289Ser
M0112496 HJMHJPPO_00003 4448 3 Skin 0.30 protein_coding synonymous_variant LOW 864T>A Leu288Leu
M0112497 HJMHJPPO_00003 4463 3 Skin 0.30 protein_coding synonymous_variant LOW 849T>C Asn283Asn
M0112498 HJMHJPPO_00003 4477 3 Skin 0.30 protein_coding synonymous_variant LOW 835C>T Leu279Leu
M0112499 HJMHJPPO_00003 4508 3 Skin 0.30 protein_coding synonymous_variant LOW 804G>A Ala268Ala
M0112500 HJMHJPPO_00003 4547 3 Skin 0.30 protein_coding synonymous_variant LOW 765T>C Gly255Gly
M0112501 HJMHJPPO_00003 4555 3 Skin 0.30 protein_coding missense_variant MODERATE 757A>G Ile253Val
M0112502 HJMHJPPO_00003 4556 3 Skin 0.30 protein_coding synonymous_variant LOW 756C>G Thr252Thr
M0112503 HJMHJPPO_00003 4573 3 Skin 0.30 protein_coding missense_variant MODERATE 739G>C Ala247Pro
M0112504 HJMHJPPO_00003 4577 3 Skin 0.30 protein_coding synonymous_variant LOW 735C>T Thr245Thr
M0112505 HJMHJPPO_00003 4604 3 Skin 0.30 protein_coding synonymous_variant LOW 708A>C Gly236Gly
M0112506 HJMHJPPO_00003 4613 3 Skin 0.30 protein_coding synonymous_variant LOW 699G>A Gly233Gly
M0112507 HJMHJPPO_00003 4616 3 Skin 0.30 protein_coding synonymous_variant LOW 696T>G Val232Val
M0112508 HJMHJPPO_00003 4658 3 Skin 0.30 protein_coding synonymous_variant LOW 654T>G Ala218Ala
M0112509 HJMHJPPO_00003 4664 3 Skin 0.30 protein_coding synonymous_variant LOW 648G>A Lys216Lys
M0112510 HJMHJPPO_00003 4667 3 Skin 0.30 protein_coding synonymous_variant LOW 645A>T Pro215Pro
M0112511 HJMHJPPO_00003 4672 3 Skin 0.30 protein_coding synonymous_variant LOW 640T>C Leu214Leu
M0112512 HJMHJPPO_00003 4676 3 Skin 0.30 protein_coding synonymous_variant LOW 636C>T Thr212Thr
M0112513 HJMHJPPO_00003 4691 3 Skin 0.30 protein_coding synonymous_variant LOW 621C>T Thr207Thr
M0112514 HJMHJPPO_00003 4726 3 Skin 0.30 protein_coding missense_variant MODERATE 586T>G Leu196Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term