Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1157
  Reference Plasmid   NZ_CP123972.1
  Reference Plasmid Size   215206
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0198140 MHBHDLDA_00045 55855 3 Gut 0.30 protein_coding synonymous_variant LOW 438T>C Gly146Gly
M0198141 MHBHDLDA_00045 55867 3 Gut 0.30 protein_coding synonymous_variant LOW 426A>G Lys142Lys
M0198142 MHBHDLDA_00045 55876 3 Gut 0.30 protein_coding synonymous_variant LOW 417G>A Glu139Glu
M0198143 MHBHDLDA_00045 56092 3 Gut 0.30 protein_coding synonymous_variant LOW 201G>A Ala67Ala
M0198144 MHBHDLDA_00045 56100 3 Gut 0.30 protein_coding missense_variant MODERATE 193G>A Val65Ile
M0198145 MHBHDLDA_00045 56116 3 Gut 0.30 protein_coding synonymous_variant LOW 177C>T Val59Val
M0198146 MHBHDLDA_00045 56130 3 Gut 0.30 protein_coding missense_variant MODERATE 163G>A Gly55Ser
M0198147 MHBHDLDA_00045 56170 3 Gut 0.30 protein_coding synonymous_variant LOW 123G>A Lys41Lys
M0198148 MHBHDLDA_00045 56176 3 Gut 0.30 protein_coding synonymous_variant LOW 117C>T Phe39Phe
M0198149 MHBHDLDA_00045 56223 3 Gut 0.30 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0198150 MHBHDLDA_00046 56525 3 Gut 0.30 protein_coding synonymous_variant LOW 327G>A Arg109Arg
M0198151 MHBHDLDA_00046 56551 3 Gut 0.30 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0198152 MHBHDLDA_00046 56717 3 Gut 0.30 protein_coding synonymous_variant LOW 135A>G Lys45Lys
M0198153 MHBHDLDA_00050 60850 3 Gut 0.30 protein_coding synonymous_variant LOW 507T>A Ser169Ser
M0198154 MHBHDLDA_00051 61600 3 Gut 0.30 protein_coding synonymous_variant LOW 1110T>C Asp370Asp
M0198155 MHBHDLDA_00051 61639 3 Gut 0.30 protein_coding synonymous_variant LOW 1071C>A Ala357Ala
M0198156 MHBHDLDA_00051 61843 3 Gut 0.30 protein_coding synonymous_variant LOW 867C>T Val289Val
M0198157 MHBHDLDA_00070 81626 3 Gut 0.30 protein_coding synonymous_variant LOW 552G>A Leu184Leu
M0198158 MHBHDLDA_00075 84907 3 Gut 0.30 protein_coding missense_variant MODERATE 307A>G Arg103Gly
M0198159 MHBHDLDA_00077 86020 3 Gut 0.30 protein_coding synonymous_variant LOW 1407G>A Glu469Glu
M0198160 MHBHDLDA_00077 86113 3 Gut 0.30 protein_coding synonymous_variant LOW 1314A>C Ser438Ser
M0198161 MHBHDLDA_00077 86209 3 Gut 0.30 protein_coding synonymous_variant LOW 1218C>T Asp406Asp
M0198162 MHBHDLDA_00077 86354 3 Gut 0.30 protein_coding missense_variant MODERATE 1073A>G Lys358Arg
M0198163 MHBHDLDA_00077 86386 3 Gut 0.30 protein_coding synonymous_variant LOW 1041G>A Ala347Ala
M0198164 MHBHDLDA_00077 86413 3 Gut 0.30 protein_coding synonymous_variant LOW 1014T>C Asp338Asp
M0198165 MHBHDLDA_00077 86647 3 Gut 0.30 protein_coding synonymous_variant LOW 780C>T Gly260Gly
M0198166 MHBHDLDA_00077 86750 3 Gut 0.30 protein_coding missense_variant MODERATE 677A>G Asp226Gly
M0198167 MHBHDLDA_00077 86762 3 Gut 0.30 protein_coding missense_variant MODERATE 665A>C Glu222Ala
M0198168 MHBHDLDA_00077 86764 3 Gut 0.30 protein_coding synonymous_variant LOW 663G>A Glu221Glu
M0198169 MHBHDLDA_00077 86935 3 Gut 0.30 protein_coding synonymous_variant LOW 492A>G Lys164Lys
M0198170 MHBHDLDA_00077 86981 3 Gut 0.30 protein_coding missense_variant MODERATE 446T>C Val149Ala
M0198171 MHBHDLDA_00077 87145 3 Gut 0.30 protein_coding synonymous_variant LOW 282A>G Lys94Lys
M0198172 MHBHDLDA_00077 87196 3 Gut 0.30 protein_coding synonymous_variant LOW 231T>A Pro77Pro
M0198173 MHBHDLDA_00077 87220 3 Gut 0.30 protein_coding synonymous_variant LOW 207A>G Thr69Thr
M0198174 MHBHDLDA_00077 87313 3 Gut 0.30 protein_coding synonymous_variant LOW 114A>G Leu38Leu
M0198175 MHBHDLDA_00071 87459 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4250T>C None
M0198176 MHBHDLDA_00071 87533 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4324A>G None
M0198177 MHBHDLDA_00071 87625 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4416A>G None
M0198178 MHBHDLDA_00071 87629 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4420G>A None
M0198179 MHBHDLDA_00071 87630 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4421A>G None
M0198180 MHBHDLDA_00071 87758 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4549T>C None
M0198181 MHBHDLDA_00071 87771 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4562T>C None
M0198182 MHBHDLDA_00079 87914 3 Gut 0.30 protein_coding synonymous_variant LOW 1038T>C Ser346Ser
M0198183 MHBHDLDA_00079 87920 3 Gut 0.30 protein_coding synonymous_variant LOW 1032A>G Thr344Thr
M0198184 MHBHDLDA_00079 87932 3 Gut 0.30 protein_coding synonymous_variant LOW 1020A>G Gly340Gly
M0198185 MHBHDLDA_00079 87950 3 Gut 0.30 protein_coding synonymous_variant LOW 1002G>A Lys334Lys
M0198186 MHBHDLDA_00079 88070 3 Gut 0.30 protein_coding synonymous_variant LOW 882T>C Gly294Gly
M0198187 MHBHDLDA_00079 88094 3 Gut 0.30 protein_coding synonymous_variant LOW 858T>C Asp286Asp
M0198188 MHBHDLDA_00079 88100 3 Gut 0.30 protein_coding synonymous_variant LOW 852G>A Thr284Thr
M0198189 MHBHDLDA_00079 88103 3 Gut 0.30 protein_coding synonymous_variant LOW 849T>C Ile283Ile
M0198190 MHBHDLDA_00079 88109 3 Gut 0.30 protein_coding synonymous_variant LOW 843C>T His281His
M0198191 MHBHDLDA_00079 88112 3 Gut 0.30 protein_coding synonymous_variant LOW 840C>T Asp280Asp
M0198192 MHBHDLDA_00079 88121 3 Gut 0.30 protein_coding synonymous_variant LOW 831T>C Tyr277Tyr
M0198193 MHBHDLDA_00079 88138 3 Gut 0.30 protein_coding missense_variant MODERATE 814G>A Ala272Thr
M0198194 MHBHDLDA_00079 88208 3 Gut 0.30 protein_coding synonymous_variant LOW 744C>T Tyr248Tyr
M0198195 MHBHDLDA_00079 88211 3 Gut 0.30 protein_coding synonymous_variant LOW 741A>G Val247Val
M0198196 MHBHDLDA_00079 88220 3 Gut 0.30 protein_coding synonymous_variant LOW 732G>A Lys244Lys
M0198197 MHBHDLDA_00079 88235 3 Gut 0.30 protein_coding synonymous_variant LOW 717T>C Asn239Asn
M0198198 MHBHDLDA_00079 88241 3 Gut 0.30 protein_coding synonymous_variant LOW 711C>T Ile237Ile
M0198199 MHBHDLDA_00079 88319 3 Gut 0.30 protein_coding synonymous_variant LOW 633G>A Lys211Lys
M0198200 MHBHDLDA_00079 88357 3 Gut 0.30 protein_coding synonymous_variant LOW 595T>C Leu199Leu
M0198201 MHBHDLDA_00079 88382 3 Gut 0.30 protein_coding synonymous_variant LOW 570A>G Thr190Thr
M0198202 MHBHDLDA_00079 88417 3 Gut 0.30 protein_coding missense_variant MODERATE 535T>A Ser179Thr
M0198203 MHBHDLDA_00079 88430 3 Gut 0.30 protein_coding synonymous_variant LOW 522T>C Ser174Ser
M0198204 MHBHDLDA_00079 88436 3 Gut 0.30 protein_coding synonymous_variant LOW 516T>C Gly172Gly
M0198205 MHBHDLDA_00079 88459 3 Gut 0.30 protein_coding synonymous_variant LOW 493C>T Leu165Leu
M0198206 MHBHDLDA_00079 88463 3 Gut 0.30 protein_coding synonymous_variant LOW 489G>A Gly163Gly
M0198207 MHBHDLDA_00079 88505 3 Gut 0.30 protein_coding synonymous_variant LOW 447A>G Val149Val
M0198208 MHBHDLDA_00079 88602 3 Gut 0.30 protein_coding missense_variant MODERATE 350C>A Ala117Asp
M0198209 MHBHDLDA_00079 88607 3 Gut 0.30 protein_coding synonymous_variant LOW 345T>C Pro115Pro
M0198210 MHBHDLDA_00079 88637 3 Gut 0.30 protein_coding synonymous_variant LOW 315C>T Gly105Gly
M0198211 MHBHDLDA_00079 88639 3 Gut 0.30 protein_coding missense_variant MODERATE 313G>A Gly105Ser
M0198212 MHBHDLDA_00079 88643 3 Gut 0.30 protein_coding synonymous_variant LOW 309T>C Ile103Ile
M0198213 MHBHDLDA_00079 88673 3 Gut 0.30 protein_coding synonymous_variant LOW 279T>C Pro93Pro
M0198214 MHBHDLDA_00079 88694 3 Gut 0.30 protein_coding synonymous_variant LOW 258C>T Gly86Gly
M0198215 MHBHDLDA_00079 88841 3 Gut 0.30 protein_coding synonymous_variant LOW 111G>A Lys37Lys
M0198216 MHBHDLDA_00079 88868 3 Gut 0.30 protein_coding synonymous_variant LOW 84C>T Thr28Thr
M0198217 MHBHDLDA_00080 88999 3 Gut 0.30 protein_coding synonymous_variant LOW 186C>T Asn62Asn
M0198218 MHBHDLDA_00080 89002 3 Gut 0.30 protein_coding synonymous_variant LOW 183G>A Lys61Lys
M0198219 MHBHDLDA_00087 94960 3 Gut 0.30 protein_coding synonymous_variant LOW 33T>C Phe11Phe
M0198220 MHBHDLDA_00087 95815 3 Gut 0.30 protein_coding synonymous_variant LOW 888T>C Phe296Phe
M0198221 MHBHDLDA_00087 95834 3 Gut 0.30 protein_coding missense_variant MODERATE 907G>A Glu303Lys
M0198222 MHBHDLDA_00087 95897 3 Gut 0.30 protein_coding missense_variant MODERATE 970A>G Asn324Asp
M0198223 MHBHDLDA_00087 96025 3 Gut 0.30 protein_coding synonymous_variant LOW 1098A>C Ile366Ile
M0198224 MHBHDLDA_00087 96043 3 Gut 0.30 protein_coding synonymous_variant LOW 1116A>G Pro372Pro
M0198225 MHBHDLDA_00087 96064 3 Gut 0.30 protein_coding synonymous_variant LOW 1137A>T Gly379Gly
M0198226 MHBHDLDA_00087 96085 3 Gut 0.30 protein_coding synonymous_variant LOW 1158C>T Val386Val
M0198227 MHBHDLDA_00087 96100 3 Gut 0.30 protein_coding synonymous_variant LOW 1173T>C Gly391Gly
M0198228 MHBHDLDA_00087 96106 3 Gut 0.30 protein_coding missense_variant MODERATE 1179A>T Glu393Asp
M0198229 MHBHDLDA_00087 96110 3 Gut 0.30 protein_coding synonymous_variant LOW 1183T>C Leu395Leu
M0198230 MHBHDLDA_00087 96137 3 Gut 0.30 protein_coding missense_variant MODERATE 1210G>A Glu404Lys
M0198231 MHBHDLDA_00087 96217 3 Gut 0.30 protein_coding synonymous_variant LOW 1290C>T Ser430Ser
M0198232 MHBHDLDA_00087 96391 3 Gut 0.30 protein_coding synonymous_variant LOW 1464G>A Thr488Thr
M0198233 MHBHDLDA_00087 96483 3 Gut 0.30 protein_coding missense_variant MODERATE 1556C>T Ala519Val
M0198234 MHBHDLDA_00087 96718 3 Gut 0.30 protein_coding synonymous_variant LOW 1791A>C Ser597Ser
M0198235 MHBHDLDA_00087 96841 3 Gut 0.30 protein_coding synonymous_variant LOW 1914A>G Leu638Leu
M0198236 MHBHDLDA_00087 96847 3 Gut 0.30 protein_coding synonymous_variant LOW 1920A>T Ala640Ala
M0198237 MHBHDLDA_00087 96916 3 Gut 0.30 protein_coding synonymous_variant LOW 1989G>A Lys663Lys
M0198238 MHBHDLDA_00087 96920 3 Gut 0.30 protein_coding synonymous_variant LOW 1993C>T Leu665Leu
M0198239 MHBHDLDA_00087 96976 3 Gut 0.30 protein_coding synonymous_variant LOW 2049C>T Tyr683Tyr
M0198240 MHBHDLDA_00084 97617 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3568C>T None
M0198241 MHBHDLDA_00084 97706 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3657A>G None
M0198242 MHBHDLDA_00084 97733 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3684G>A None
M0198243 MHBHDLDA_00084 97795 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3746T>C None
M0198244 MHBHDLDA_00089 100000 3 Gut 0.30 protein_coding synonymous_variant LOW 96T>C Gly32Gly
M0198245 MHBHDLDA_00090 100194 3 Gut 0.30 protein_coding synonymous_variant LOW 714G>A Thr238Thr
M0198246 MHBHDLDA_00090 100644 3 Gut 0.30 protein_coding synonymous_variant LOW 264T>C Asn88Asn
M0198247 MHBHDLDA_00088 101028 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -1728T>G None
M0198248 MHBHDLDA_00088 101055 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -1755C>A None
M0198249 MHBHDLDA_00088 101152 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -1852T>C None
M0198250 MHBHDLDA_00088 101153 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -1853G>A None
M0198251 MHBHDLDA_00091 101401 3 Gut 0.30 protein_coding missense_variant MODERATE 118A>G Lys40Glu
M0198252 MHBHDLDA_00091 101450 3 Gut 0.30 protein_coding missense_variant MODERATE 167G>A Gly56Glu
M0198253 MHBHDLDA_00091 101479 3 Gut 0.30 protein_coding missense_variant MODERATE 196G>A Val66Ile
M0198254 MHBHDLDA_00091 101569 3 Gut 0.30 protein_coding missense_variant MODERATE 286T>G Ser96Ala
M0198255 MHBHDLDA_00091 101576 3 Gut 0.30 protein_coding missense_variant MODERATE 293A>G Asn98Ser
M0198256 MHBHDLDA_00093 104077 3 Gut 0.30 protein_coding missense_variant MODERATE 1387A>G Thr463Ala
M0198257 MHBHDLDA_00094 104274 3 Gut 0.30 protein_coding synonymous_variant LOW 885T>C Tyr295Tyr
M0198258 MHBHDLDA_00094 104286 3 Gut 0.30 protein_coding synonymous_variant LOW 873C>T Ala291Ala
M0198259 MHBHDLDA_00094 104328 3 Gut 0.30 protein_coding synonymous_variant LOW 831G>T Ala277Ala
M0198260 MHBHDLDA_00094 104373 3 Gut 0.30 protein_coding synonymous_variant LOW 786C>T Asn262Asn
M0198261 MHBHDLDA_00094 104478 3 Gut 0.30 protein_coding synonymous_variant LOW 681C>T Ser227Ser
M0198262 MHBHDLDA_00094 104530 3 Gut 0.30 protein_coding missense_variant MODERATE 629T>C Phe210Ser
M0198263 MHBHDLDA_00094 104535 3 Gut 0.30 protein_coding synonymous_variant LOW 624G>A Val208Val
M0198264 MHBHDLDA_00094 105003 3 Gut 0.30 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0198265 MHBHDLDA_00094 105006 3 Gut 0.30 protein_coding synonymous_variant LOW 153C>T Asn51Asn
M0198266 MHBHDLDA_00094 105068 3 Gut 0.30 protein_coding missense_variant MODERATE 91A>G Ile31Val
M0198267 MHBHDLDA_00094 105078 3 Gut 0.30 protein_coding synonymous_variant LOW 81T>C Cys27Cys
M0198268 MHBHDLDA_00094 105105 3 Gut 0.30 protein_coding synonymous_variant LOW 54T>C Asn18Asn
M0198269 MHBHDLDA_00090 105244 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4337T>C None
M0198270 MHBHDLDA_00090 105248 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4341A>G None
M0198271 MHBHDLDA_00090 105269 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4362G>C None
M0198272 MHBHDLDA_00095 105525 3 Gut 0.30 protein_coding synonymous_variant LOW 684T>C Ile228Ile
M0198273 MHBHDLDA_00094 106905 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -1747A>G None
M0198274 MHBHDLDA_00098 108107 3 Gut 0.30 protein_coding synonymous_variant LOW 207G>A Gly69Gly
M0198275 MHBHDLDA_00100 111474 3 Gut 0.30 protein_coding synonymous_variant LOW 855C>T Pro285Pro
M0198276 MHBHDLDA_00100 113303 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -975C>T None
M0198277 MHBHDLDA_00102 113849 4 Gut 0.40 protein_coding missense_variant MODERATE 416T>C Val139Ala
M0198278 MHBHDLDA_00101 117693 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4441C>T None
M0198279 MHBHDLDA_00108 119021 3 Gut 0.30 protein_coding synonymous_variant LOW 168T>C Asn56Asn
M0198280 MHBHDLDA_00108 120462 3 Gut 0.30 protein_coding missense_variant MODERATE 1609A>G Ile537Val
M0198281 MHBHDLDA_00111 122558 3 Gut 0.30 protein_coding missense_variant MODERATE 1807A>G Asn603Asp
M0198282 MHBHDLDA_00111 123547 3 Gut 0.30 protein_coding missense_variant MODERATE 818A>G Asn273Ser
M0198283 MHBHDLDA_00109 124466 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -2641T>C None
M0198284 MHBHDLDA_00115 127161 3 Gut 0.30 protein_coding synonymous_variant LOW 114C>T Pro38Pro
M0198285 MHBHDLDA_00110 127305 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4959A>G None
M0198286 MHBHDLDA_00110 127312 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4966G>T None
M0198287 MHBHDLDA_00110 127314 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4968G>A None
M0198288 MHBHDLDA_00110 127326 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4980C>A None
M0198289 MHBHDLDA_00116 127351 3 Gut 0.30 protein_coding synonymous_variant LOW 807C>T Ile269Ile
M0198290 MHBHDLDA_00116 127357 3 Gut 0.30 protein_coding synonymous_variant LOW 801A>G Glu267Glu
M0198291 MHBHDLDA_00116 127387 3 Gut 0.30 protein_coding synonymous_variant LOW 771A>G Glu257Glu
M0198292 MHBHDLDA_00116 127390 3 Gut 0.30 protein_coding synonymous_variant LOW 768T>C Ser256Ser
M0198293 MHBHDLDA_00116 127402 3 Gut 0.30 protein_coding synonymous_variant LOW 756G>T Leu252Leu
M0198294 MHBHDLDA_00116 127423 3 Gut 0.30 protein_coding synonymous_variant LOW 735C>T Ile245Ile
M0198295 MHBHDLDA_00116 127432 3 Gut 0.30 protein_coding synonymous_variant LOW 726T>G Val242Val
M0198296 MHBHDLDA_00116 127435 3 Gut 0.30 protein_coding synonymous_variant LOW 723C>T Ile241Ile
M0198297 MHBHDLDA_00116 127438 3 Gut 0.30 protein_coding synonymous_variant LOW 720G>A Ala240Ala
M0198298 MHBHDLDA_00116 127443 3 Gut 0.30 protein_coding synonymous_variant LOW 715C>T Leu239Leu
M0198299 MHBHDLDA_00116 127453 3 Gut 0.30 protein_coding synonymous_variant LOW 705T>C Ile235Ile
M0198300 MHBHDLDA_00116 127483 3 Gut 0.30 protein_coding synonymous_variant LOW 675C>T Asn225Asn
M0198301 MHBHDLDA_00116 127489 3 Gut 0.30 protein_coding synonymous_variant LOW 669T>C Val223Val
M0198302 MHBHDLDA_00116 127495 3 Gut 0.30 protein_coding synonymous_variant LOW 663A>G Val221Val
M0198303 MHBHDLDA_00116 127504 3 Gut 0.30 protein_coding synonymous_variant LOW 654T>C Thr218Thr
M0198304 MHBHDLDA_00116 127513 3 Gut 0.30 protein_coding synonymous_variant LOW 645A>G Glu215Glu
M0198305 MHBHDLDA_00116 127516 3 Gut 0.30 protein_coding synonymous_variant LOW 642C>T Ile214Ile
M0198306 MHBHDLDA_00116 127543 3 Gut 0.30 protein_coding synonymous_variant LOW 615C>T Ile205Ile
M0198307 MHBHDLDA_00116 127573 3 Gut 0.30 protein_coding synonymous_variant LOW 585A>C Ala195Ala
M0198308 MHBHDLDA_00116 127590 3 Gut 0.30 protein_coding missense_variant MODERATE 568A>G Ile190Val
M0198309 MHBHDLDA_00118 129633 3 Gut 0.30 protein_coding synonymous_variant LOW 147T>C Phe49Phe
M0198310 MHBHDLDA_00118 129714 3 Gut 0.30 protein_coding synonymous_variant LOW 66T>C Gly22Gly
M0198311 MHBHDLDA_00119 130868 3 Gut 0.30 protein_coding missense_variant MODERATE 856G>A Asp286Asn
M0198312 MHBHDLDA_00120 131323 3 Gut 0.30 protein_coding synonymous_variant LOW 366A>G Val122Val
M0198313 MHBHDLDA_00114 131410 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4927T>C None
M0198314 MHBHDLDA_00115 131507 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4233G>A None
M0198315 MHBHDLDA_00115 131516 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4242T>C None
M0198316 MHBHDLDA_00115 131541 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4267C>T None
M0198317 MHBHDLDA_00100 112321 3 Gut 0.30 protein_coding missense_variant MODERATE 8T>C Ile3Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MHBHDLDA_00074 PHI:124066 prdB 79 4.3e-31 1 81 1.0000 0.9585 rodents nosocomial diarrhea proline reductase reduced virulence
MHBHDLDA_00075 PHI:124066 prdB 73.3 1.2e-60 1 150 1.0000 0.9585 rodents nosocomial diarrhea proline reductase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MHBHDLDA_00093 WII29679.1|GH1 100 0 1 474 1 0.9937
MHBHDLDA_00144 CCO10203.2|GH1 87.9 8.11e-247 1 388 0.9949 0.9949
MHBHDLDA_00152 CCO10203.2|GH1 87.9 8.11e-247 1 388 0.9949 0.9949
MHBHDLDA_00156 CCO10203.2|GH1 87.9 8.11e-247 1 388 0.9949 0.9949





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MHBHDLDA_00054 2.A.1.1.74 71.2 2.2e-171 2 417 0.9928 0.9882 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
MHBHDLDA_00123 2.A.21.3.20 74.7 2.1e-208 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family