Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1160
  Reference Plasmid   NZ_CP124417.1
  Reference Plasmid Size   108564
  Reference Plasmid GC Content   0.46
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0198342 BCHNHFJG_00005 2916 3 Gut 0.75 protein_coding missense_variant MODERATE 150C>G Asp50Glu
M0198343 BCHNHFJG_00005 3001 3 Gut 0.75 protein_coding missense_variant MODERATE 65T>C Val22Ala
M0198344 BCHNHFJG_00002 4234 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2476C>T None
M0198345 BCHNHFJG_00008 5163 3 Gut 0.75 protein_coding synonymous_variant LOW 1461A>G Thr487Thr
M0198346 BCHNHFJG_00008 6438 3 Gut 0.75 protein_coding synonymous_variant LOW 186G>A Ala62Ala
M0198347 BCHNHFJG_00008 6441 4 Gut 1.00 protein_coding synonymous_variant LOW 183C>T Ser61Ser
M0198348 BCHNHFJG_00009 6853 3 Gut 0.75 protein_coding missense_variant MODERATE 40A>G Thr14Ala
M0198349 BCHNHFJG_00012 9145 4 Gut 1.00 protein_coding synonymous_variant LOW 330A>C Val110Val
M0198350 BCHNHFJG_00008 11188 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4565G>A None
M0198351 BCHNHFJG_00016 12366 3 Gut 0.75 protein_coding missense_variant MODERATE 2579G>A Arg860Lys
M0198352 BCHNHFJG_00016 13862 3 Gut 0.75 protein_coding synonymous_variant LOW 1083A>G Val361Val
M0198353 BCHNHFJG_00016 13883 3 Gut 0.75 protein_coding synonymous_variant LOW 1062T>C Phe354Phe
M0198354 BCHNHFJG_00016 13964 4 Gut 1.00 protein_coding synonymous_variant LOW 981C>A Gly327Gly
M0198355 BCHNHFJG_00016 14018 3 Gut 0.75 protein_coding synonymous_variant LOW 927T>G Leu309Leu
M0198356 BCHNHFJG_00016 14030 3 Gut 0.75 protein_coding synonymous_variant LOW 915G>A Glu305Glu
M0198357 BCHNHFJG_00016 14048 3 Gut 0.75 protein_coding synonymous_variant LOW 897A>C Pro299Pro
M0198358 BCHNHFJG_00016 14135 4 Gut 1.00 protein_coding synonymous_variant LOW 810T>G Pro270Pro
M0198359 BCHNHFJG_00016 14273 4 Gut 1.00 protein_coding synonymous_variant LOW 672C>T Ile224Ile
M0198360 BCHNHFJG_00016 14813 3 Gut 0.75 protein_coding synonymous_variant LOW 132T>C Ser44Ser
M0198361 BCHNHFJG_00016 14816 4 Gut 1.00 protein_coding synonymous_variant LOW 129A>G Ala43Ala
M0198362 BCHNHFJG_00016 14988 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -44T>C None
M0198363 BCHNHFJG_00017 16103 4 Gut 1.00 protein_coding synonymous_variant LOW 258G>C Ala86Ala
M0198364 BCHNHFJG_00018 17736 4 Gut 1.00 protein_coding missense_variant MODERATE 829A>C Asn277His
M0198365 BCHNHFJG_00019 18741 3 Gut 0.75 protein_coding synonymous_variant LOW 135A>C Gly45Gly
M0198366 BCHNHFJG_00019 18870 4 Gut 1.00 protein_coding missense_variant MODERATE 6A>C Lys2Asn
M0198367 BCHNHFJG_00020 19207 3 Gut 0.75 protein_coding synonymous_variant LOW 81T>C Ser27Ser
M0198368 BCHNHFJG_00020 19216 3 Gut 0.75 protein_coding synonymous_variant LOW 90A>G Gln30Gln
M0198369 BCHNHFJG_00020 19224 3 Gut 0.75 protein_coding missense_variant MODERATE 98G>A Arg33Lys
M0198370 BCHNHFJG_00020 19226 3 Gut 0.75 protein_coding missense_variant MODERATE 100C>A Leu34Ile
M0198371 BCHNHFJG_00020 19227 3 Gut 0.75 protein_coding missense_variant MODERATE 101T>C Leu34Pro
M0198372 BCHNHFJG_00020 19228 3 Gut 0.75 protein_coding synonymous_variant LOW 102T>A Leu34Leu
M0198373 BCHNHFJG_00020 19234 3 Gut 0.75 protein_coding synonymous_variant LOW 108T>G Gly36Gly
M0198374 BCHNHFJG_00020 19237 4 Gut 1.00 protein_coding synonymous_variant LOW 111C>T Tyr37Tyr
M0198375 BCHNHFJG_00020 19243 3 Gut 0.75 protein_coding synonymous_variant LOW 117T>C Asn39Asn
M0198376 BCHNHFJG_00020 19270 3 Gut 0.75 protein_coding synonymous_variant LOW 144T>C Ser48Ser
M0198377 BCHNHFJG_00020 19307 3 Gut 0.75 protein_coding synonymous_variant LOW 181T>C Leu61Leu
M0198378 BCHNHFJG_00020 19318 3 Gut 0.75 protein_coding synonymous_variant LOW 192G>A Ala64Ala
M0198379 BCHNHFJG_00020 19372 3 Gut 0.75 protein_coding synonymous_variant LOW 246T>C Pro82Pro
M0198380 BCHNHFJG_00020 19405 3 Gut 0.75 protein_coding synonymous_variant LOW 279C>T Thr93Thr
M0198381 BCHNHFJG_00017 20773 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4413A>G None
M0198382 BCHNHFJG_00022 20985 4 Gut 1.00 protein_coding missense_variant MODERATE 83C>G Ala28Gly
M0198383 BCHNHFJG_00018 22450 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3886A>C None
M0198384 BCHNHFJG_00018 22850 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4286A>C None
M0198385 BCHNHFJG_00018 22851 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4287G>T None
M0198386 BCHNHFJG_00028 23122 3 Gut 0.75 protein_coding synonymous_variant LOW 237C>T Ile79Ile
M0198387 BCHNHFJG_00028 23137 4 Gut 1.00 protein_coding synonymous_variant LOW 222G>A Arg74Arg
M0198388 BCHNHFJG_00028 23242 4 Gut 1.00 protein_coding synonymous_variant LOW 117C>T Ala39Ala
M0198389 BCHNHFJG_00028 23259 4 Gut 1.00 protein_coding synonymous_variant LOW 100C>T Leu34Leu
M0198390 BCHNHFJG_00028 23335 3 Gut 0.75 protein_coding missense_variant MODERATE 24C>A Asp8Glu
M0198391 BCHNHFJG_00029 23362 3 Gut 0.75 protein_coding missense_variant MODERATE 146G>A Arg49Lys
M0198392 BCHNHFJG_00029 23364 3 Gut 0.75 protein_coding synonymous_variant LOW 144T>G Val48Val
M0198393 BCHNHFJG_00030 23579 3 Gut 0.75 protein_coding synonymous_variant LOW 141C>T Cys47Cys
M0198394 BCHNHFJG_00030 23693 3 Gut 0.75 protein_coding synonymous_variant LOW 27A>G Lys9Lys
M0198395 BCHNHFJG_00030 23701 3 Gut 0.75 protein_coding synonymous_variant LOW 19A>C Arg7Arg
M0198396 BCHNHFJG_00031 23743 3 Gut 0.75 protein_coding synonymous_variant LOW 1296C>A Thr432Thr
M0198397 BCHNHFJG_00031 23794 4 Gut 1.00 protein_coding synonymous_variant LOW 1245T>C Asp415Asp
M0198398 BCHNHFJG_00031 23797 4 Gut 1.00 protein_coding synonymous_variant LOW 1242T>G Pro414Pro
M0198399 BCHNHFJG_00031 23866 3 Gut 0.75 protein_coding synonymous_variant LOW 1173C>T Asp391Asp
M0198400 BCHNHFJG_00031 23890 4 Gut 1.00 protein_coding synonymous_variant LOW 1149T>C Ser383Ser
M0198401 BCHNHFJG_00031 23941 3 Gut 0.75 protein_coding synonymous_variant LOW 1098G>A Thr366Thr
M0198402 BCHNHFJG_00031 23971 4 Gut 1.00 protein_coding synonymous_variant LOW 1068T>G Pro356Pro
M0198403 BCHNHFJG_00031 23980 3 Gut 0.75 protein_coding synonymous_variant LOW 1059T>C Asp353Asp
M0198404 BCHNHFJG_00031 24145 3 Gut 0.75 protein_coding synonymous_variant LOW 894C>T Tyr298Tyr
M0198405 BCHNHFJG_00031 24174 3 Gut 0.75 protein_coding missense_variant MODERATE 865G>A Ala289Thr
M0198406 BCHNHFJG_00031 24211 3 Gut 0.75 protein_coding synonymous_variant LOW 828C>G Leu276Leu
M0198407 BCHNHFJG_00031 24277 3 Gut 0.75 protein_coding synonymous_variant LOW 762G>A Arg254Arg
M0198408 BCHNHFJG_00031 24439 3 Gut 0.75 protein_coding synonymous_variant LOW 600C>A Ala200Ala
M0198409 BCHNHFJG_00031 24496 4 Gut 1.00 protein_coding synonymous_variant LOW 543G>T Val181Val
M0198410 BCHNHFJG_00031 24523 4 Gut 1.00 protein_coding synonymous_variant LOW 516T>C Cys172Cys
M0198411 BCHNHFJG_00031 24553 4 Gut 1.00 protein_coding synonymous_variant LOW 486C>T Ser162Ser
M0198412 BCHNHFJG_00031 24574 4 Gut 1.00 protein_coding synonymous_variant LOW 465C>A Ala155Ala
M0198413 BCHNHFJG_00031 24643 4 Gut 1.00 protein_coding synonymous_variant LOW 396T>C Phe132Phe
M0198414 BCHNHFJG_00031 24694 4 Gut 1.00 protein_coding synonymous_variant LOW 345C>T Gly115Gly
M0198415 BCHNHFJG_00031 24697 4 Gut 1.00 protein_coding synonymous_variant LOW 342T>A Ala114Ala
M0198416 BCHNHFJG_00031 24706 4 Gut 1.00 protein_coding synonymous_variant LOW 333T>C Asp111Asp
M0198417 BCHNHFJG_00031 24778 4 Gut 1.00 protein_coding synonymous_variant LOW 261T>A Ala87Ala
M0198418 BCHNHFJG_00031 24828 4 Gut 1.00 protein_coding missense_variant MODERATE 211A>G Ile71Val
M0198419 BCHNHFJG_00032 25362 4 Gut 1.00 protein_coding synonymous_variant LOW 144T>C Asn48Asn
M0198420 BCHNHFJG_00035 28327 4 Gut 1.00 protein_coding synonymous_variant LOW 702A>G Thr234Thr
M0198421 BCHNHFJG_00035 28705 4 Gut 1.00 protein_coding synonymous_variant LOW 324T>C Ser108Ser
M0198422 BCHNHFJG_00035 28810 3 Gut 0.75 protein_coding synonymous_variant LOW 219G>A Ala73Ala
M0198423 BCHNHFJG_00035 28873 4 Gut 1.00 protein_coding synonymous_variant LOW 156T>C Ala52Ala
M0198424 BCHNHFJG_00036 29369 3 Gut 0.75 protein_coding synonymous_variant LOW 444G>A Leu148Leu
M0198425 BCHNHFJG_00036 29462 3 Gut 0.75 protein_coding synonymous_variant LOW 351T>C Asp117Asp
M0198426 BCHNHFJG_00036 29465 3 Gut 0.75 protein_coding synonymous_variant LOW 348G>T Ala116Ala
M0198427 BCHNHFJG_00036 29624 3 Gut 0.75 protein_coding synonymous_variant LOW 189T>A Leu63Leu
M0198428 BCHNHFJG_00036 29639 3 Gut 0.75 protein_coding synonymous_variant LOW 174C>G Leu58Leu
M0198429 BCHNHFJG_00036 29693 3 Gut 0.75 protein_coding synonymous_variant LOW 120C>T Asp40Asp
M0198430 BCHNHFJG_00040 32236 3 Gut 0.75 protein_coding synonymous_variant LOW 12T>A Leu4Leu
M0198431 BCHNHFJG_00043 33928 4 Gut 1.00 protein_coding synonymous_variant LOW 246C>T Asn82Asn
M0198432 BCHNHFJG_00043 33952 4 Gut 1.00 protein_coding synonymous_variant LOW 222T>C Arg74Arg
M0198433 BCHNHFJG_00043 33987 4 Gut 1.00 protein_coding missense_variant MODERATE 187T>A Ser63Thr
M0198434 BCHNHFJG_00043 34009 4 Gut 1.00 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0198435 BCHNHFJG_00043 34015 4 Gut 1.00 protein_coding synonymous_variant LOW 159T>C Tyr53Tyr
M0198436 BCHNHFJG_00045 38193 3 Gut 0.75 protein_coding missense_variant MODERATE 549A>T Arg183Ser
M0198437 BCHNHFJG_00046 39885 4 Gut 1.00 protein_coding synonymous_variant LOW 3678G>T Ala1226Ala
M0198438 BCHNHFJG_00046 40697 4 Gut 1.00 protein_coding missense_variant MODERATE 2866G>A Ala956Thr
M0198439 BCHNHFJG_00046 43558 4 Gut 1.00 protein_coding missense_variant MODERATE 5G>A Gly2Glu
M0198440 BCHNHFJG_00051 48429 3 Gut 0.75 protein_coding synonymous_variant LOW 2253A>G Gln751Gln
M0198441 BCHNHFJG_00051 48852 3 Gut 0.75 protein_coding synonymous_variant LOW 1830C>T Val610Val
M0198442 BCHNHFJG_00051 48882 3 Gut 0.75 protein_coding synonymous_variant LOW 1800G>A Ala600Ala
M0198443 BCHNHFJG_00051 49809 3 Gut 0.75 protein_coding synonymous_variant LOW 873C>T Ala291Ala
M0198444 BCHNHFJG_00053 51216 3 Gut 0.75 protein_coding synonymous_variant LOW 141C>T Asn47Asn
M0198445 BCHNHFJG_00053 51336 3 Gut 0.75 protein_coding synonymous_variant LOW 21C>A Leu7Leu
M0198446 BCHNHFJG_00057 53250 3 Gut 0.75 protein_coding synonymous_variant LOW 177C>T Ser59Ser
M0198447 BCHNHFJG_00063 57931 3 Gut 0.75 protein_coding synonymous_variant LOW 1266A>G Ala422Ala
M0198448 BCHNHFJG_00069 63450 3 Gut 0.75 protein_coding synonymous_variant LOW 351C>T Ile117Ile
M0198449 BCHNHFJG_00069 63561 3 Gut 0.75 protein_coding synonymous_variant LOW 240C>G Leu80Leu
M0198450 BCHNHFJG_00069 63570 3 Gut 0.75 protein_coding synonymous_variant LOW 231C>T Arg77Arg
M0198451 BCHNHFJG_00069 63704 3 Gut 0.75 protein_coding synonymous_variant LOW 97C>T Leu33Leu
M0198452 BCHNHFJG_00070 64298 3 Gut 0.75 protein_coding synonymous_variant LOW 183C>T Gly61Gly
M0198453 BCHNHFJG_00064 64495 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4016T>G None
M0198454 BCHNHFJG_00071 64823 3 Gut 0.75 protein_coding synonymous_variant LOW 261T>G Pro87Pro
M0198455 BCHNHFJG_00071 65255 3 Gut 0.75 protein_coding synonymous_variant LOW 693C>G Val231Val
M0198456 BCHNHFJG_00071 65261 3 Gut 0.75 protein_coding synonymous_variant LOW 699T>G Leu233Leu
M0198457 BCHNHFJG_00071 65276 3 Gut 0.75 protein_coding synonymous_variant LOW 714G>A Glu238Glu
M0198458 BCHNHFJG_00071 65297 3 Gut 0.75 protein_coding synonymous_variant LOW 735A>T Ser245Ser
M0198459 BCHNHFJG_00071 65312 3 Gut 0.75 protein_coding synonymous_variant LOW 750C>T Ile250Ile
M0198460 BCHNHFJG_00071 65354 3 Gut 0.75 protein_coding synonymous_variant LOW 792A>G Thr264Thr
M0198461 BCHNHFJG_00071 65735 3 Gut 0.75 protein_coding synonymous_variant LOW 1173A>C Ser391Ser
M0198462 BCHNHFJG_00071 65738 3 Gut 0.75 protein_coding synonymous_variant LOW 1176T>C Gly392Gly
M0198463 BCHNHFJG_00071 65743 3 Gut 0.75 protein_coding missense_variant MODERATE 1181A>G Lys394Arg
M0198464 BCHNHFJG_00071 65750 3 Gut 0.75 protein_coding synonymous_variant LOW 1188T>C Asp396Asp
M0198465 BCHNHFJG_00071 65768 3 Gut 0.75 protein_coding synonymous_variant LOW 1206T>G Ser402Ser
M0198466 BCHNHFJG_00073 66471 3 Gut 0.75 protein_coding synonymous_variant LOW 42A>C Ile14Ile
M0198467 BCHNHFJG_00073 66849 3 Gut 0.75 protein_coding synonymous_variant LOW 420C>T Phe140Phe
M0198468 BCHNHFJG_00067 67473 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -5000T>G None
M0198469 BCHNHFJG_00068 67799 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4664A>G None
M0198470 BCHNHFJG_00068 67838 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4703C>G None
M0198471 BCHNHFJG_00076 68052 3 Gut 0.75 protein_coding missense_variant MODERATE 34G>A Val12Ile
M0198472 BCHNHFJG_00076 68204 3 Gut 0.75 protein_coding synonymous_variant LOW 186T>C Asn62Asn
M0198473 BCHNHFJG_00106 88112 3 Gut 0.75 protein_coding missense_variant MODERATE 200C>A Thr67Lys
M0198474 BCHNHFJG_00106 88129 3 Gut 0.75 protein_coding synonymous_variant LOW 183T>C Ile61Ile
M0198475 BCHNHFJG_00106 88177 3 Gut 0.75 protein_coding synonymous_variant LOW 135G>A Ser45Ser
M0198476 BCHNHFJG_00106 88198 3 Gut 0.75 protein_coding synonymous_variant LOW 114C>T Ser38Ser
M0198477 BCHNHFJG_00106 88225 3 Gut 0.75 protein_coding synonymous_variant LOW 87T>G Thr29Thr
M0198478 BCHNHFJG_00106 88252 3 Gut 0.75 protein_coding synonymous_variant LOW 60T>A Thr20Thr
M0198479 BCHNHFJG_00107 88386 3 Gut 0.75 protein_coding missense_variant MODERATE 551C>T Ala184Val
M0198480 BCHNHFJG_00107 88397 3 Gut 0.75 protein_coding synonymous_variant LOW 540G>A Gln180Gln
M0198481 BCHNHFJG_00109 89273 3 Gut 0.75 protein_coding synonymous_variant LOW 387T>C Ile129Ile
M0198482 BCHNHFJG_00109 89462 3 Gut 0.75 protein_coding synonymous_variant LOW 198G>A Glu66Glu
M0198483 BCHNHFJG_00109 89504 3 Gut 0.75 protein_coding synonymous_variant LOW 156A>G Lys52Lys
M0198484 BCHNHFJG_00109 89518 3 Gut 0.75 protein_coding missense_variant MODERATE 142T>G Ser48Ala
M0198485 BCHNHFJG_00109 89525 3 Gut 0.75 protein_coding synonymous_variant LOW 135G>A Lys45Lys
M0198486 BCHNHFJG_00109 89534 3 Gut 0.75 protein_coding synonymous_variant LOW 126C>T Cys42Cys
M0198487 BCHNHFJG_00109 89543 3 Gut 0.75 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0198488 BCHNHFJG_00109 89581 4 Gut 1.00 protein_coding missense_variant MODERATE 79T>G Ser27Ala
M0198489 BCHNHFJG_00109 89582 3 Gut 0.75 protein_coding synonymous_variant LOW 78A>G Glu26Glu
M0198490 BCHNHFJG_00109 89594 3 Gut 0.75 protein_coding synonymous_variant LOW 66A>T Arg22Arg
M0198491 BCHNHFJG_00109 89615 3 Gut 0.75 protein_coding synonymous_variant LOW 45G>A Glu15Glu
M0198492 BCHNHFJG_00109 89648 3 Gut 0.75 protein_coding missense_variant MODERATE 12A>C Leu4Phe
M0198493 BCHNHFJG_00102 89682 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4824A>G None
M0198494 BCHNHFJG_00102 89708 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4850C>T None
M0198495 BCHNHFJG_00102 89720 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4862T>G None
M0198496 BCHNHFJG_00110 89801 3 Gut 0.75 protein_coding synonymous_variant LOW 150T>A Val50Val
M0198497 BCHNHFJG_00110 89819 3 Gut 0.75 protein_coding synonymous_variant LOW 132T>C Gly44Gly
M0198498 BCHNHFJG_00110 89840 3 Gut 0.75 protein_coding synonymous_variant LOW 111T>C Gly37Gly
M0198499 BCHNHFJG_00110 89852 3 Gut 0.75 protein_coding synonymous_variant LOW 99C>T Leu33Leu
M0198500 BCHNHFJG_00110 89860 3 Gut 0.75 protein_coding missense_variant MODERATE 91G>A Val31Ile
M0198501 BCHNHFJG_00110 89900 3 Gut 0.75 protein_coding synonymous_variant LOW 51T>C Ala17Ala
M0198502 BCHNHFJG_00110 89903 3 Gut 0.75 protein_coding synonymous_variant LOW 48G>T Leu16Leu
M0198503 BCHNHFJG_00110 89909 3 Gut 0.75 protein_coding synonymous_variant LOW 42G>A Ala14Ala
M0198504 BCHNHFJG_00110 89919 3 Gut 0.75 protein_coding missense_variant MODERATE 32C>T Thr11Ile
M0198505 BCHNHFJG_00111 90015 3 Gut 0.75 protein_coding missense_variant MODERATE 440A>G Asp147Gly
M0198506 BCHNHFJG_00111 90043 3 Gut 0.75 protein_coding missense_variant MODERATE 412A>G Arg138Gly
M0198507 BCHNHFJG_00111 90072 3 Gut 0.75 protein_coding missense_variant MODERATE 383C>T Ser128Phe
M0198508 BCHNHFJG_00111 90092 3 Gut 0.75 protein_coding synonymous_variant LOW 363G>A Gly121Gly
M0198509 BCHNHFJG_00111 90112 3 Gut 0.75 protein_coding missense_variant MODERATE 343C>T Pro115Ser
M0198510 BCHNHFJG_00111 90129 3 Gut 0.75 protein_coding missense_variant MODERATE 326A>G Asp109Gly
M0198511 BCHNHFJG_00111 90241 3 Gut 0.75 protein_coding missense_variant MODERATE 214A>G Thr72Ala
M0198512 BCHNHFJG_00111 90243 3 Gut 0.75 protein_coding missense_variant MODERATE 212G>A Ser71Asn
M0198513 BCHNHFJG_00111 90271 3 Gut 0.75 protein_coding missense_variant MODERATE 184A>G Thr62Ala
M0198514 BCHNHFJG_00111 90308 3 Gut 0.75 protein_coding missense_variant MODERATE 147G>T Lys49Asn
M0198515 BCHNHFJG_00111 90340 3 Gut 0.75 protein_coding missense_variant MODERATE 115G>A Ala39Thr
M0198516 BCHNHFJG_00111 90359 3 Gut 0.75 protein_coding synonymous_variant LOW 96T>C Arg32Arg
M0198517 BCHNHFJG_00111 90367 3 Gut 0.75 protein_coding missense_variant MODERATE 88C>A Leu30Met
M0198518 BCHNHFJG_00111 90406 3 Gut 0.75 protein_coding synonymous_variant LOW 49C>T Leu17Leu
M0198519 BCHNHFJG_00111 90407 3 Gut 0.75 protein_coding synonymous_variant LOW 48A>T Ser16Ser
M0198520 BCHNHFJG_00111 90426 3 Gut 0.75 protein_coding missense_variant MODERATE 29C>T Ala10Val
M0198521 BCHNHFJG_00112 90605 3 Gut 0.75 protein_coding stop_gained HIGH 589C>T Gln197*
M0198522 BCHNHFJG_00112 90612 3 Gut 0.75 protein_coding synonymous_variant LOW 582C>T Tyr194Tyr
M0198523 BCHNHFJG_00112 90654 3 Gut 0.75 protein_coding synonymous_variant LOW 540C>A Ser180Ser
M0198524 BCHNHFJG_00112 90753 3 Gut 0.75 protein_coding synonymous_variant LOW 441T>C Ala147Ala
M0198525 BCHNHFJG_00112 90812 3 Gut 0.75 protein_coding missense_variant MODERATE 382G>A Val128Met
M0198526 BCHNHFJG_00112 91011 3 Gut 0.75 protein_coding synonymous_variant LOW 183A>C Ile61Ile
M0198527 BCHNHFJG_00112 91062 3 Gut 0.75 protein_coding synonymous_variant LOW 132C>T Phe44Phe
M0198528 BCHNHFJG_00112 91115 3 Gut 0.75 protein_coding missense_variant MODERATE 79T>C Ser27Pro
M0198529 BCHNHFJG_00112 91128 3 Gut 0.75 protein_coding synonymous_variant LOW 66T>C Ser22Ser
M0198530 BCHNHFJG_00112 91162 3 Gut 0.75 protein_coding missense_variant MODERATE 32A>C Glu11Ala
M0198531 BCHNHFJG_00104 92012 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4703T>C None
M0198532 BCHNHFJG_00104 92027 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4718T>C None
M0198533 BCHNHFJG_00114 92344 4 Gut 1.00 protein_coding synonymous_variant LOW 444C>A Pro148Pro
M0198534 BCHNHFJG_00114 92377 3 Gut 0.75 protein_coding synonymous_variant LOW 411C>A Val137Val
M0198535 BCHNHFJG_00105 92928 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4901G>A None
M0198536 BCHNHFJG_00115 93044 4 Gut 1.00 protein_coding missense_variant MODERATE 737G>A Gly246Asp
M0198537 BCHNHFJG_00115 93289 4 Gut 1.00 protein_coding synonymous_variant LOW 492C>T Asp164Asp
M0198538 BCHNHFJG_00115 93388 3 Gut 0.75 protein_coding synonymous_variant LOW 393T>G Ala131Ala
M0198539 BCHNHFJG_00107 93823 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4887T>C None
M0198540 BCHNHFJG_00117 94673 4 Gut 1.00 protein_coding missense_variant MODERATE 253T>A Ser85Thr
M0198541 BCHNHFJG_00119 96051 4 Gut 1.00 protein_coding synonymous_variant LOW 57C>G Leu19Leu
M0198542 BCHNHFJG_00119 96057 4 Gut 1.00 protein_coding synonymous_variant LOW 51T>C Asn17Asn
M0198543 BCHNHFJG_00119 96096 4 Gut 1.00 protein_coding synonymous_variant LOW 12C>A Ile4Ile
M0198544 BCHNHFJG_00120 96133 4 Gut 1.00 protein_coding synonymous_variant LOW 433C>A Arg145Arg
M0198545 BCHNHFJG_00120 96137 4 Gut 1.00 protein_coding synonymous_variant LOW 429C>T His143His
M0198546 BCHNHFJG_00120 96146 4 Gut 1.00 protein_coding synonymous_variant LOW 420C>T Ala140Ala
M0198547 BCHNHFJG_00120 96284 3 Gut 0.75 protein_coding synonymous_variant LOW 282C>T Gly94Gly
M0198548 BCHNHFJG_00120 96311 3 Gut 0.75 protein_coding synonymous_variant LOW 255A>C Pro85Pro
M0198549 BCHNHFJG_00120 96449 3 Gut 0.75 protein_coding synonymous_variant LOW 117A>T Ser39Ser
M0198550 BCHNHFJG_00120 96466 3 Gut 0.75 protein_coding missense_variant MODERATE 100G>A Ala34Thr
M0198551 BCHNHFJG_00121 96548 3 Gut 0.75 protein_coding missense_variant MODERATE 1075T>C Ser359Pro
M0198552 BCHNHFJG_00122 97941 3 Gut 0.75 protein_coding synonymous_variant LOW 723C>T Phe241Phe
M0198553 BCHNHFJG_00122 97950 3 Gut 0.75 protein_coding synonymous_variant LOW 714T>C Asp238Asp
M0198554 BCHNHFJG_00122 97998 3 Gut 0.75 protein_coding synonymous_variant LOW 666T>A Val222Val
M0198555 BCHNHFJG_00122 98058 3 Gut 0.75 protein_coding synonymous_variant LOW 606A>C Val202Val
M0198556 BCHNHFJG_00122 98373 4 Gut 1.00 protein_coding synonymous_variant LOW 291G>A Leu97Leu
M0198557 BCHNHFJG_00122 98562 3 Gut 0.75 protein_coding synonymous_variant LOW 102C>T Ala34Ala
M0198558 BCHNHFJG_00122 98574 3 Gut 0.75 protein_coding synonymous_variant LOW 90C>T Gly30Gly
M0198559 BCHNHFJG_00123 99350 3 Gut 0.75 protein_coding synonymous_variant LOW 534G>A Glu178Glu
M0198560 BCHNHFJG_00123 99356 3 Gut 0.75 protein_coding synonymous_variant LOW 528A>G Glu176Glu
M0198561 BCHNHFJG_00123 99548 3 Gut 0.75 protein_coding synonymous_variant LOW 336G>A Thr112Thr
M0198562 BCHNHFJG_00123 99608 3 Gut 0.75 protein_coding synonymous_variant LOW 276T>C Ser92Ser
M0198563 BCHNHFJG_00117 99907 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4982C>T None
M0198564 BCHNHFJG_00117 99910 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4985G>A None
M0198565 BCHNHFJG_00118 99977 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4346G>T None
M0198566 BCHNHFJG_00124 100377 3 Gut 0.75 protein_coding synonymous_variant LOW 1929A>C Gly643Gly
M0198567 BCHNHFJG_00124 101184 4 Gut 1.00 protein_coding missense_variant MODERATE 1122T>G Asp374Glu
M0198568 BCHNHFJG_00124 101475 3 Gut 0.75 protein_coding synonymous_variant LOW 831C>T Thr277Thr
M0198569 BCHNHFJG_00121 102317 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4695T>A None
M0198570 BCHNHFJG_00121 102347 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4725T>C None
M0198571 BCHNHFJG_00126 103050 4 Gut 1.00 protein_coding missense_variant MODERATE 652A>G Thr218Ala
M0198572 BCHNHFJG_00127 104568 3 Gut 0.75 protein_coding missense_variant MODERATE 1040G>A Ser347Asn
M0198573 BCHNHFJG_00127 104831 3 Gut 0.75 protein_coding synonymous_variant LOW 777A>C Ile259Ile
M0198574 BCHNHFJG_00124 105626 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3321G>A None
M0198575 BCHNHFJG_00128 106266 3 Gut 0.75 protein_coding synonymous_variant LOW 657T>C Thr219Thr
M0198576 BCHNHFJG_00128 106551 3 Gut 0.75 protein_coding synonymous_variant LOW 372G>A Lys124Lys
M0198577 BCHNHFJG_00129 107210 3 Gut 0.75 protein_coding synonymous_variant LOW 612T>C Asn204Asn
M0198578 BCHNHFJG_00129 107234 3 Gut 0.75 protein_coding synonymous_variant LOW 588T>A Pro196Pro
M0198579 BCHNHFJG_00129 107243 3 Gut 0.75 protein_coding synonymous_variant LOW 579T>C Asp193Asp
M0198580 BCHNHFJG_00129 107246 3 Gut 0.75 protein_coding synonymous_variant LOW 576C>T Val192Val
M0198581 BCHNHFJG_00129 107255 3 Gut 0.75 protein_coding synonymous_variant LOW 567G>T Leu189Leu
M0198582 BCHNHFJG_00129 107258 3 Gut 0.75 protein_coding synonymous_variant LOW 564A>G Glu188Glu
M0198583 BCHNHFJG_00129 107270 3 Gut 0.75 protein_coding synonymous_variant LOW 552T>C His184His
M0198584 BCHNHFJG_00129 107279 3 Gut 0.75 protein_coding synonymous_variant LOW 543T>C Leu181Leu
M0198585 BCHNHFJG_00129 107318 3 Gut 0.75 protein_coding synonymous_variant LOW 504T>C Thr168Thr
M0198586 BCHNHFJG_00126 108276 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4575T>A None
M0198587 BCHNHFJG_00126 108357 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4656T>G None
M0198588 BCHNHFJG_00126 108361 4 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4660T>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BCHNHFJG_00015 PHI:7263 cspE 75 4e-25 3 70 0.9577 0.9855 primates salmonellosis cold shock protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BCHNHFJG_00044 1.E.48.1.1 96.3 1.3e-51 1 107 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.48 The Enterobacterial Holin (EBHol) Family