Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1181
  Reference Plasmid   NZ_CP129201.1
  Reference Plasmid Size   506353
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0112689 BABKGBPK_00599 471728 4 Skin 0.10 protein_coding synonymous_variant LOW 774A>G Lys258Lys
M0112690 BABKGBPK_00599 471773 4 Skin 0.10 protein_coding synonymous_variant LOW 819T>C Ile273Ile
M0112691 BABKGBPK_00600 471839 7 Skin 0.18 protein_coding missense_variant MODERATE 13C>T His5Tyr
M0112692 BABKGBPK_00600 471841 7 Skin 0.18 protein_coding synonymous_variant LOW 15T>C His5His
M0112693 BABKGBPK_00600 471928 3 Skin 0.08 protein_coding synonymous_variant LOW 102A>G Ala34Ala
M0112694 BABKGBPK_00600 471935 3 Skin 0.08 protein_coding missense_variant MODERATE 109C>T Leu37Phe
M0112695 BABKGBPK_00600 472075 4 Skin 0.10 protein_coding synonymous_variant LOW 249G>C Pro83Pro
M0112696 BABKGBPK_00600 472087 4 Skin 0.10 protein_coding synonymous_variant LOW 261G>C Thr87Thr
M0112697 BABKGBPK_00600 472088 4 Skin 0.10 protein_coding synonymous_variant LOW 262C>T Leu88Leu
M0112698 BABKGBPK_00600 472108 4 Skin 0.10 protein_coding synonymous_variant LOW 282C>T Gly94Gly
M0112699 BABKGBPK_00600 472310 5 Skin 0.13 protein_coding missense_variant MODERATE 484A>G Ile162Val
M0112700 BABKGBPK_00600 472441 3 Skin 0.08 protein_coding synonymous_variant LOW 615G>A Pro205Pro
M0112701 BABKGBPK_00601 472751 6 Skin 0.15 protein_coding missense_variant MODERATE 89G>C Ser30Thr
M0112702 BABKGBPK_00601 472765 6 Skin 0.15 protein_coding missense_variant MODERATE 103A>C Thr35Pro
M0112703 BABKGBPK_00601 472939 6 Skin 0.15 protein_coding synonymous_variant LOW 277T>C Leu93Leu
M0112704 BABKGBPK_00601 473022 5 Skin 0.13 protein_coding synonymous_variant LOW 360C>G Arg120Arg
M0112705 BABKGBPK_00601 473050 5 Skin 0.13 protein_coding missense_variant MODERATE 388G>A Glu130Lys
M0112706 BABKGBPK_00601 473100 4 Skin 0.10 protein_coding synonymous_variant LOW 438G>T Ala146Ala
M0112707 BABKGBPK_00601 473135 5 Skin 0.13 protein_coding missense_variant MODERATE 473A>T Gln158Leu
M0112708 BABKGBPK_00601 473148 4 Skin 0.10 protein_coding missense_variant MODERATE 486G>T Glu162Asp
M0112709 BABKGBPK_00601 473304 8 Skin 0.20 protein_coding synonymous_variant LOW 642T>C Thr214Thr
M0112710 BABKGBPK_00601 473305 8 Skin 0.20 protein_coding missense_variant MODERATE 643G>C Glu215Gln
M0112711 BABKGBPK_00598 470367 6 Skin 0.15 protein_coding synonymous_variant LOW 237A>G Ser79Ser
M0112712 BABKGBPK_00599 471308 3 Skin 0.08 protein_coding synonymous_variant LOW 354A>G Ser118Ser
M0112713 BABKGBPK_00601 473234 3 Skin 0.08 protein_coding missense_variant MODERATE 572A>G Gln191Arg
M0112714 BABKGBPK_00601 473526 5 Skin 0.13 protein_coding synonymous_variant LOW 864C>G Leu288Leu
M0112715 BABKGBPK_00601 473594 7 Skin 0.18 protein_coding missense_variant MODERATE 932G>A Ser311Asn
M0112716 BABKGBPK_00601 473607 7 Skin 0.18 protein_coding synonymous_variant LOW 945G>A Ala315Ala
M0112717 BABKGBPK_00601 473650 6 Skin 0.15 protein_coding missense_variant MODERATE 988C>A Gln330Lys
M0112718 BABKGBPK_00602 473849 6 Skin 0.15 protein_coding synonymous_variant LOW 183T>G Arg61Arg
M0112719 BABKGBPK_00602 473921 6 Skin 0.15 protein_coding synonymous_variant LOW 255A>C Gly85Gly
M0112720 BABKGBPK_00602 473925 6 Skin 0.15 protein_coding missense_variant MODERATE 259A>C Ser87Arg
M0112721 BABKGBPK_00602 473986 5 Skin 0.13 protein_coding missense_variant MODERATE 320G>A Ser107Asn
M0112722 BABKGBPK_00602 474152 5 Skin 0.13 protein_coding synonymous_variant LOW 486A>G Val162Val
M0112723 BABKGBPK_00602 474174 5 Skin 0.13 protein_coding missense_variant MODERATE 508C>G Pro170Ala
M0112724 BABKGBPK_00602 474181 3 Skin 0.08 protein_coding missense_variant MODERATE 515C>T Ala172Val
M0112725 BABKGBPK_00602 474203 5 Skin 0.13 protein_coding synonymous_variant LOW 537C>T Arg179Arg
M0112726 BABKGBPK_00602 474284 6 Skin 0.15 protein_coding synonymous_variant LOW 618G>A Glu206Glu
M0112727 BABKGBPK_00602 474330 7 Skin 0.18 protein_coding missense_variant MODERATE 664A>G Ile222Val
M0112728 BABKGBPK_00602 474344 5 Skin 0.13 protein_coding synonymous_variant LOW 678C>G Val226Val
M0112729 BABKGBPK_00592 466706 5 Skin 0.13 protein_coding synonymous_variant LOW 603G>C Arg201Arg
M0112730 BABKGBPK_00592 466736 5 Skin 0.13 protein_coding synonymous_variant LOW 633G>A Val211Val
M0112731 BABKGBPK_00592 466753 5 Skin 0.13 protein_coding missense_variant MODERATE 650A>T Tyr217Phe
M0112732 BABKGBPK_00592 466777 5 Skin 0.13 protein_coding missense_variant MODERATE 674T>C Val225Ala
M0112733 BABKGBPK_00592 466781 5 Skin 0.13 protein_coding synonymous_variant LOW 678G>C Leu226Leu
M0112734 BABKGBPK_00592 466795 5 Skin 0.13 protein_coding missense_variant MODERATE 692T>C Val231Ala
M0112735 BABKGBPK_00592 466800 5 Skin 0.13 protein_coding missense_variant MODERATE 697C>A Leu233Ile
M0112736 BABKGBPK_00592 466802 5 Skin 0.13 protein_coding synonymous_variant LOW 699C>T Leu233Leu
M0112737 BABKGBPK_00585 466809 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4621T>C None
M0112738 BABKGBPK_00585 466810 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4622T>G None
M0112739 BABKGBPK_00585 466821 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4633A>T None
M0112740 BABKGBPK_00585 466851 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4663T>G None
M0112741 BABKGBPK_00585 466856 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4668C>A None
M0112742 BABKGBPK_00585 466857 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4669T>C None
M0112743 BABKGBPK_00585 466858 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4670C>T None
M0112744 BABKGBPK_00585 466875 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4687A>G None
M0112745 BABKGBPK_00593 466958 5 Skin 0.13 protein_coding synonymous_variant LOW 54C>T Ala18Ala
M0112746 BABKGBPK_00593 466960 5 Skin 0.13 protein_coding missense_variant MODERATE 56C>T Ala19Val
M0112747 BABKGBPK_00593 466961 5 Skin 0.13 protein_coding synonymous_variant LOW 57T>C Ala19Ala
M0112748 BABKGBPK_00593 466964 5 Skin 0.13 protein_coding synonymous_variant LOW 60C>A Ala20Ala
M0112749 BABKGBPK_00593 466965 5 Skin 0.13 protein_coding missense_variant MODERATE 61A>G Ile21Val
M0112750 BABKGBPK_00593 466979 5 Skin 0.13 protein_coding synonymous_variant LOW 75C>A Gly25Gly
M0112751 BABKGBPK_00593 466982 5 Skin 0.13 protein_coding synonymous_variant LOW 78T>C Gly26Gly
M0112752 BABKGBPK_00593 467021 5 Skin 0.13 protein_coding synonymous_variant LOW 117G>C Gly39Gly
M0112753 BABKGBPK_00593 467023 5 Skin 0.13 protein_coding missense_variant MODERATE 119C>A Ala40Glu
M0112754 BABKGBPK_00585 467042 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4854T>A None
M0112755 BABKGBPK_00585 467080 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4892G>A None
M0112756 BABKGBPK_00585 467082 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4894C>T None
M0112757 BABKGBPK_00585 467083 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4895T>A None
M0112758 BABKGBPK_00585 467084 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4896A>G None
M0112759 BABKGBPK_00585 467102 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4914G>A None
M0112760 BABKGBPK_00585 467177 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4989T>C None
M0112761 BABKGBPK_00586 467211 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4216A>G None
M0112762 BABKGBPK_00586 467213 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4218G>T None
M0112763 BABKGBPK_00586 467224 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4229C>T None
M0112764 BABKGBPK_00594 467231 5 Skin 0.13 protein_coding missense_variant MODERATE 179C>A Pro60Gln
M0112765 BABKGBPK_00594 467234 5 Skin 0.13 protein_coding missense_variant MODERATE 176C>A Ala59Asp
M0112766 BABKGBPK_00594 467246 5 Skin 0.13 protein_coding missense_variant MODERATE 164G>T Cys55Phe
M0112767 BABKGBPK_00594 467255 5 Skin 0.13 protein_coding missense_variant MODERATE 155G>A Arg52Lys
M0112768 BABKGBPK_00594 467266 5 Skin 0.13 protein_coding synonymous_variant LOW 144T>C Leu48Leu
M0112769 BABKGBPK_00594 467270 5 Skin 0.13 protein_coding missense_variant MODERATE 140T>A Leu47Gln
M0112770 BABKGBPK_00594 467272 5 Skin 0.13 protein_coding synonymous_variant LOW 138A>G Glu46Glu
M0112771 BABKGBPK_00594 467281 5 Skin 0.13 protein_coding missense_variant MODERATE 129G>T Gln43His
M0112772 BABKGBPK_00594 467295 5 Skin 0.13 protein_coding missense_variant MODERATE 115A>G Asn39Asp
M0112773 BABKGBPK_00594 467331 5 Skin 0.13 protein_coding missense_variant MODERATE 79G>A Ala27Thr
M0112774 BABKGBPK_00595 467833 6 Skin 0.15 protein_coding synonymous_variant LOW 948C>A Ile316Ile
M0112775 BABKGBPK_00595 467886 6 Skin 0.15 protein_coding missense_variant MODERATE 895C>A Pro299Thr
M0112776 BABKGBPK_00595 468043 7 Skin 0.18 protein_coding synonymous_variant LOW 738T>G Pro246Pro
M0112777 BABKGBPK_00595 468055 7 Skin 0.18 protein_coding synonymous_variant LOW 726G>C Leu242Leu
M0112778 BABKGBPK_00595 468114 7 Skin 0.18 protein_coding missense_variant MODERATE 667G>T Ala223Ser
M0112779 BABKGBPK_00595 468244 7 Skin 0.18 protein_coding synonymous_variant LOW 537T>C Val179Val
M0112780 BABKGBPK_00596 468814 7 Skin 0.18 protein_coding synonymous_variant LOW 184T>C Leu62Leu
M0112781 BABKGBPK_00591 465966 4 Skin 0.10 protein_coding synonymous_variant LOW 303A>G Val101Val
M0112782 BABKGBPK_00591 465981 4 Skin 0.10 protein_coding synonymous_variant LOW 318C>T Asp106Asp
M0112783 BABKGBPK_00591 465991 4 Skin 0.10 protein_coding missense_variant MODERATE 328C>A Leu110Met
M0112784 BABKGBPK_00591 466068 4 Skin 0.10 protein_coding synonymous_variant LOW 405G>A Leu135Leu
M0112785 BABKGBPK_00591 466078 4 Skin 0.10 protein_coding missense_variant MODERATE 415G>C Val139Leu
M0112786 BABKGBPK_00591 466083 4 Skin 0.10 protein_coding synonymous_variant LOW 420G>A Val140Val
M0112787 BABKGBPK_00592 466151 4 Skin 0.10 protein_coding synonymous_variant LOW 48A>G Thr16Thr
M0112788 BABKGBPK_00592 466172 4 Skin 0.10 protein_coding synonymous_variant LOW 69C>T Arg23Arg
M0112789 BABKGBPK_00592 466197 4 Skin 0.10 protein_coding missense_variant MODERATE 94T>G Trp32Gly
M0112790 BABKGBPK_00592 466205 4 Skin 0.10 protein_coding missense_variant MODERATE 102C>G Phe34Leu
M0112791 BABKGBPK_00592 466226 4 Skin 0.10 protein_coding synonymous_variant LOW 123T>C Phe41Phe
M0112792 BABKGBPK_00592 466241 4 Skin 0.10 protein_coding synonymous_variant LOW 138T>G Leu46Leu
M0112793 BABKGBPK_00592 466256 4 Skin 0.10 protein_coding synonymous_variant LOW 153T>C Asn51Asn
M0112794 BABKGBPK_00592 466270 4 Skin 0.10 protein_coding missense_variant MODERATE 167A>G His56Arg
M0112795 BABKGBPK_00592 466317 4 Skin 0.10 protein_coding missense_variant MODERATE 214A>C Ile72Leu
M0112796 BABKGBPK_00592 466455 4 Skin 0.10 protein_coding missense_variant MODERATE 352G>C Val118Leu
M0112797 BABKGBPK_00592 466489 4 Skin 0.10 protein_coding missense_variant MODERATE 386T>C Val129Ala
M0112798 BABKGBPK_00592 466523 4 Skin 0.10 protein_coding synonymous_variant LOW 420C>T Gly140Gly
M0112799 BABKGBPK_00592 466556 4 Skin 0.10 protein_coding synonymous_variant LOW 453G>A Val151Val
M0112800 BABKGBPK_00592 466566 4 Skin 0.10 protein_coding missense_variant MODERATE 463T>G Trp155Gly
M0112801 BABKGBPK_00592 466568 4 Skin 0.10 protein_coding stop_gained HIGH 465G>A Trp155*
M0112802 BABKGBPK_00592 466571 4 Skin 0.10 protein_coding synonymous_variant LOW 468T>C Ile156Ile
M0112803 BABKGBPK_00592 466574 4 Skin 0.10 protein_coding synonymous_variant LOW 471C>T Thr157Thr
M0112804 BABKGBPK_00592 466590 4 Skin 0.10 protein_coding missense_variant MODERATE 487G>A Val163Ile
M0112805 BABKGBPK_00592 466645 4 Skin 0.10 protein_coding missense_variant MODERATE 542G>A Gly181Asp
M0112806 BABKGBPK_00295 233736 3 Skin 0.08 protein_coding synonymous_variant LOW 693G>T Ala231Ala
M0112807 BABKGBPK_00138 92952 5 Skin 0.13 protein_coding missense_variant MODERATE 95G>C Arg32Pro
M0112808 BABKGBPK_00138 92957 5 Skin 0.13 protein_coding synonymous_variant LOW 90T>C Ser30Ser
M0112809 BABKGBPK_00179 126880 3 Skin 0.08 protein_coding missense_variant MODERATE 95G>C Arg32Pro
M0112810 BABKGBPK_00179 126885 3 Skin 0.08 protein_coding synonymous_variant LOW 90T>C Ser30Ser
M0112811 BABKGBPK_00601 472842 4 Skin 0.10 protein_coding missense_variant MODERATE 180A>C Glu60Asp
M0112812 BABKGBPK_00601 472848 4 Skin 0.10 protein_coding synonymous_variant LOW 186C>T Leu62Leu
M0112813 BABKGBPK_00601 472860 4 Skin 0.10 protein_coding synonymous_variant LOW 198C>T Pro66Pro
M0112814 BABKGBPK_00601 472872 4 Skin 0.10 protein_coding synonymous_variant LOW 210G>A Val70Val
M0112815 BABKGBPK_00603 474904 6 Skin 0.15 protein_coding synonymous_variant LOW 330G>A Gln110Gln
M0112816 BABKGBPK_00598 470298 3 Skin 0.08 protein_coding synonymous_variant LOW 168C>T Ser56Ser
M0112817 BABKGBPK_00598 470323 3 Skin 0.08 protein_coding missense_variant MODERATE 193C>G Arg65Gly
M0112818 BABKGBPK_00598 470343 3 Skin 0.08 protein_coding synonymous_variant LOW 213G>A Glu71Glu
M0112819 BABKGBPK_00598 470352 3 Skin 0.08 protein_coding synonymous_variant LOW 222G>A Glu74Glu
M0112820 BABKGBPK_00598 470640 3 Skin 0.08 protein_coding synonymous_variant LOW 510C>G Pro170Pro
M0112821 BABKGBPK_00598 470652 3 Skin 0.08 protein_coding synonymous_variant LOW 522T>G Leu174Leu
M0112822 BABKGBPK_00598 470707 4 Skin 0.10 protein_coding synonymous_variant LOW 577C>T Leu193Leu
M0112823 BABKGBPK_00598 470901 3 Skin 0.08 protein_coding synonymous_variant LOW 771A>G Ala257Ala
M0112824 BABKGBPK_00598 470903 3 Skin 0.08 protein_coding missense_variant MODERATE 773C>A Thr258Asn
M0112825 BABKGBPK_00598 470917 3 Skin 0.08 protein_coding missense_variant MODERATE 787A>C Thr263Pro
M0112826 BABKGBPK_00598 470919 3 Skin 0.08 protein_coding synonymous_variant LOW 789C>A Thr263Thr
M0112827 BABKGBPK_00598 470933 3 Skin 0.08 protein_coding missense_variant MODERATE 803C>A Ala268Glu
M0112828 BABKGBPK_00599 470972 3 Skin 0.08 protein_coding synonymous_variant LOW 18T>G Ala6Ala
M0112829 BABKGBPK_00599 470984 3 Skin 0.08 protein_coding synonymous_variant LOW 30C>T Thr10Thr
M0112830 BABKGBPK_00599 470987 3 Skin 0.08 protein_coding synonymous_variant LOW 33T>C Cys11Cys
M0112831 BABKGBPK_00599 471009 3 Skin 0.08 protein_coding synonymous_variant LOW 55C>T Leu19Leu
M0112832 BABKGBPK_00599 471018 3 Skin 0.08 protein_coding missense_variant MODERATE 64G>C Val22Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
BABKGBPK_00145 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] 100 1.1e-60 1 115 1.0000 1.0000 experiment
BABKGBPK_00231 Mercury (Hg) 77.9 3.2e-56 1 136 1.0000 0.9444 experiment
BABKGBPK_00232 Mercury (Hg) 83.6 7e-52 1 116 1.0000 1.0000 experiment
BABKGBPK_00233 Mercury (Hg) 76.9 8.9e-34 1 91 1.0000 1.0000 experiment
BABKGBPK_00234 Mercury (Hg) 71.7 1e-55 6 143 0.9583 0.9787 experiment
BABKGBPK_00235 Mercury (Hg) 75.2 8.5e-236 5 564 0.9947 1.0000 experiment
BABKGBPK_00327 Tellurium (Te) 70.7 5.6e-78 1 191 0.9948 1.0000 experiment
BABKGBPK_00328 Tellurium (Te) 70.3 3.6e-77 1 192 1.0000 1.0000 experiment
BABKGBPK_00329 Tellurium (Te) 71.3 2.9e-138 1 340 0.9942 0.9884 experiment
BABKGBPK_00590 Nickel (Ni), Cadmium (Cd), Zinc (Zn), Cobalt (Co) 89.1 2e-193 1 373 1.0107 1.0000 experiment
BABKGBPK_00595 Chromium (Cr) 74.6 6.9e-196 19 452 0.9647 0.9541 experiment
BABKGBPK_00150 Ethidium Bromide [class: Phenanthridine], Rhodamine 6G [class: Xanthene], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamidine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Acridine Orange [class: Acridine] 70.3 4.7e-241 5 613 0.9935 0.9870 prediction
BABKGBPK_00160 Ethidium Bromide [class: Phenanthridine], Rhodamine 6G [class: Xanthene], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamidine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Acridine Orange [class: Acridine] 71.1 1.6e-227 3 579 0.9965 0.9352 prediction
BABKGBPK_00231 Mercury (Hg) 100 8.7e-71 1 136 1.0000 1.0000 prediction
BABKGBPK_00232 Mercury (Hg) 100 3.2e-58 1 116 1.0000 0.8406 prediction
BABKGBPK_00233 Mercury (Hg) 100 4.1e-40 1 91 1.0000 1.0000 prediction
BABKGBPK_00234 Mercury (Hg) 71.7 2.3e-53 6 143 0.9583 0.9787 prediction
BABKGBPK_00235 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 100 3.60000000001819e-313 5 564 0.9929 1.0000 prediction
BABKGBPK_00327 Tellurium (Te) 71.2 5.7e-76 1 191 0.9948 1.0000 prediction
BABKGBPK_00328 Tellurium (Te) 72.4 1e-77 1 192 1.0000 1.0000 prediction
BABKGBPK_00329 Tellurium (Te) 72.2 5e-139 1 340 0.9942 0.9884 prediction
BABKGBPK_00590 Nickel (Ni), Cadmium (Cd), Zinc (Zn), Cobalt (Co) 89.7 1.9e-192 1 373 1.0107 1.0000 prediction
BABKGBPK_00595 Chromium (Cr) 100 1e-261 1 453 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
BABKGBPK_00139 ARO:3002578 99.5 2.85e-154 1 210 1.0000 0.8046 aminoglycoside antibiotic AAC(6') antibiotic inactivation
BABKGBPK_00140 ARO:3002236 100 3.72e-185 1 245 1.0000 1.0000 carbapenem IMP beta-lactamase antibiotic inactivation
BABKGBPK_00143 ARO:3001396 100 6.06e-199 16 291 0.9485 1.0000 cephalosporin OXA beta-lactamase antibiotic inactivation
BABKGBPK_00144 ARO:3002676 100 7.29e-161 1 210 1.0000 1.0000 phenicol antibiotic chloramphenicol acetyltransferase (CAT) antibiotic inactivation
BABKGBPK_00145 ARO:3005010 100 2.01e-78 1 115 1.0000 1.0000 disinfecting agents and antiseptics major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
BABKGBPK_00146 ARO:3000410 100 2.94e-199 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
BABKGBPK_00148 ARO:3002363 100 7.02e-217 1 308 1.0000 1.0000 monobactam PER beta-lactamase antibiotic inactivation
BABKGBPK_00156 ARO:3000410 100 2.94e-199 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
BABKGBPK_00158 ARO:3002363 100 7.02e-217 1 308 1.0000 1.0000 monobactam PER beta-lactamase antibiotic inactivation
BABKGBPK_00166 ARO:3000410 99.6 2.41e-198 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
BABKGBPK_00170 ARO:3006890 100 1.25e-194 1 267 1.0000 1.0000 carbapenem AFM beta-lactamase antibiotic inactivation
BABKGBPK_00171 ARO:3001205 97.5 2.28e-89 1 121 1.0000 1.0000 glycopeptide antibiotic Bleomycin resistant protein antibiotic inactivation
BABKGBPK_00187 ARO:3003109 100 0 1 491 1.0000 1.0000 macrolide antibiotic msr-type ABC-F protein antibiotic target protection
BABKGBPK_00188 ARO:3003741 100 1.87e-214 1 294 1.0000 1.0000 macrolide antibiotic macrolide phosphotransferase (MPH) antibiotic inactivation
BABKGBPK_00193 ARO:3002641 100 4.76e-210 1 271 1.0000 1.0000 aminoglycoside antibiotic APH(3') antibiotic inactivation
BABKGBPK_00197 ARO:3000167 100 3.52e-275 1 396 1.0000 1.0000 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BABKGBPK_00138 PHI:9804 int 100 4e-14 1 37 0.1098 1.0000 rodents gastroenteritis integrase reduced virulence
BABKGBPK_00170 PHI:6347 NDM-1 86.6 2.2e-132 7 267 0.9775 0.9667 moths infection carbapenemase unaffected pathogenicity
BABKGBPK_00179 PHI:9804 int 100 3.3e-14 1 37 0.1317 1.0000 rodents gastroenteritis integrase reduced virulence
BABKGBPK_00436 PHI:10380 RecA 73.2 9e-139 1 325 0.9420 0.9312 nematodes nosocomial infection DNA strand exchange and recombination protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BABKGBPK_00103 QUG92740.1|GH23 100 1.29e-167 1 234 1 1
BABKGBPK_00523 UUC21733.1|GT2 97.1 3.17e-192 1 273 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BABKGBPK_00197 2.A.1.2.102 99.7 1.2e-216 1 396 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
BABKGBPK_00232 1.A.72.3.1 77.6 1.5e-45 1 116 1.0000 1.2747 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
BABKGBPK_00233 1.A.72.3.1 76.9 4.3e-32 1 91 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
BABKGBPK_00329 2.A.109.1.1 71.9 1.8e-139 1 340 0.9884 0.9884 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.109 The Tellurium Ion Resistance (TerC) Family
BABKGBPK_00595 2.A.51.1.4 74.8 3.3e-197 1 452 0.9978 0.9934 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family