Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1191
  Reference Plasmid   NZ_CP129796.1
  Reference Plasmid Size   90172
  Reference Plasmid GC Content   0.53
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0199378 FGEEPAHF_00053 51848 3 Gut 1.00 protein_coding missense_variant MODERATE 619A>G Ile207Val
M0199379 FGEEPAHF_00053 51888 3 Gut 1.00 protein_coding synonymous_variant LOW 579A>C Gly193Gly
M0199380 FGEEPAHF_00056 53357 3 Gut 1.00 protein_coding missense_variant MODERATE 279A>G Ile93Met
M0199381 FGEEPAHF_00060 54850 3 Gut 1.00 protein_coding missense_variant MODERATE 106A>T Ile36Leu
M0199382 FGEEPAHF_00053 55057 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2591G>A None
M0199383 FGEEPAHF_00053 55081 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2615G>A None
M0199384 FGEEPAHF_00053 55084 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2618T>C None
M0199385 FGEEPAHF_00061 55121 3 Gut 1.00 protein_coding missense_variant MODERATE 539A>C Lys180Thr
M0199386 FGEEPAHF_00061 55123 3 Gut 1.00 protein_coding synonymous_variant LOW 537A>G Val179Val
M0199387 FGEEPAHF_00061 55528 3 Gut 1.00 protein_coding synonymous_variant LOW 132T>G Leu44Leu
M0199388 FGEEPAHF_00061 55552 3 Gut 1.00 protein_coding synonymous_variant LOW 108G>A Glu36Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FGEEPAHF_00070 QJO48544.1|GH23 99.4 5.24e-112 1 159 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term