Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1196
  Reference Plasmid   NZ_CP131875.1
  Reference Plasmid Size   96811
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0112870 EJJDDNAF_00064 65537 3 Skin 0.11 protein_coding synonymous_variant LOW 192G>A Ala64Ala
M0112871 EJJDDNAF_00064 65660 3 Skin 0.11 protein_coding synonymous_variant LOW 69T>C Phe23Phe
M0112872 EJJDDNAF_00061 65742 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3040A>G None
M0112873 EJJDDNAF_00061 65754 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3052T>A None
M0112874 EJJDDNAF_00061 65757 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3055G>T None
M0112875 EJJDDNAF_00061 65763 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3061C>G None
M0112876 EJJDDNAF_00061 65808 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3106A>G None
M0112877 EJJDDNAF_00061 65817 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3115C>T None
M0112878 EJJDDNAF_00061 65823 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3121T>A None
M0112879 EJJDDNAF_00061 65826 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3124G>A None
M0112880 EJJDDNAF_00061 65845 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3143A>G None
M0112881 EJJDDNAF_00061 65848 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3146C>T None
M0112882 EJJDDNAF_00061 66036 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3334A>G None
M0112883 EJJDDNAF_00061 66041 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3339A>G None
M0112884 EJJDDNAF_00065 66429 3 Skin 0.11 protein_coding synonymous_variant LOW 465A>G Gly155Gly
M0112885 EJJDDNAF_00065 66546 3 Skin 0.11 protein_coding synonymous_variant LOW 348A>G Lys116Lys
M0112886 EJJDDNAF_00065 66740 3 Skin 0.11 protein_coding synonymous_variant LOW 154T>C Leu52Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term