Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1207
  Reference Plasmid   NZ_CP134826.1
  Reference Plasmid Size   19902
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0113182 OGCMBMII_00008 14698 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4284G>A None
M0113183 OGCMBMII_00008 14723 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4309C>T None
M0113184 OGCMBMII_00008 14765 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4351G>A None
M0113185 OGCMBMII_00008 14766 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4352T>G None
M0113186 OGCMBMII_00008 14788 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4374C>T None
M0113187 OGCMBMII_00008 14793 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4379A>T None
M0113188 OGCMBMII_00008 14796 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4382A>G None
M0113189 OGCMBMII_00008 14825 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4411T>G None
M0113190 OGCMBMII_00008 14929 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4515T>C None
M0113191 OGCMBMII_00012 14970 3 Skin 0.08 protein_coding missense_variant MODERATE 25A>C Thr9Pro
M0113192 OGCMBMII_00012 15726 3 Skin 0.08 protein_coding missense_variant MODERATE 781A>G Lys261Glu
M0113193 OGCMBMII_00012 15728 3 Skin 0.08 protein_coding missense_variant MODERATE 783A>T Lys261Asn
M0113194 OGCMBMII_00012 15737 3 Skin 0.08 protein_coding synonymous_variant LOW 792T>C Asn264Asn
M0113195 OGCMBMII_00012 15802 3 Skin 0.08 protein_coding missense_variant MODERATE 857T>A Leu286Gln
M0113196 OGCMBMII_00012 15851 3 Skin 0.08 protein_coding synonymous_variant LOW 906C>T Phe302Phe
M0113197 OGCMBMII_00012 15904 3 Skin 0.08 protein_coding missense_variant MODERATE 959A>G Asn320Ser
M0113198 OGCMBMII_00013 15988 3 Skin 0.08 protein_coding missense_variant MODERATE 38G>C Ser13Thr
M0113199 OGCMBMII_00004 6035 4 Skin 0.11 protein_coding synonymous_variant LOW 339T>C Ala113Ala
M0113200 OGCMBMII_00004 6119 7 Skin 0.19 protein_coding synonymous_variant LOW 423C>T Asn141Asn
M0113201 OGCMBMII_00004 6810 8 Skin 0.22 protein_coding missense_variant MODERATE 1114A>G Ile372Val
M0113202 OGCMBMII_00017 19600 3 Skin 0.08 protein_coding missense_variant MODERATE 398A>C Glu133Ala
M0113203 OGCMBMII_00017 19607 3 Skin 0.08 protein_coding synonymous_variant LOW 405A>C Gly135Gly
M0113204 OGCMBMII_00017 19616 3 Skin 0.08 protein_coding synonymous_variant LOW 414G>T Val138Val
M0113205 OGCMBMII_00017 19622 3 Skin 0.08 protein_coding synonymous_variant LOW 420G>A Lys140Lys
M0113206 OGCMBMII_00013 16445 3 Skin 0.08 protein_coding synonymous_variant LOW 495G>A Leu165Leu
M0113207 OGCMBMII_00013 16460 3 Skin 0.08 protein_coding synonymous_variant LOW 510C>T Asp170Asp
M0113208 OGCMBMII_00013 16673 3 Skin 0.08 protein_coding synonymous_variant LOW 723C>T Val241Val
M0113209 OGCMBMII_00013 16697 3 Skin 0.08 protein_coding synonymous_variant LOW 747G>A Leu249Leu
M0113210 OGCMBMII_00013 16727 4 Skin 0.11 protein_coding synonymous_variant LOW 777T>C His259His
M0113211 OGCMBMII_00013 16841 3 Skin 0.08 protein_coding synonymous_variant LOW 891G>T Thr297Thr
M0113212 OGCMBMII_00013 16844 3 Skin 0.08 protein_coding synonymous_variant LOW 894T>C Thr298Thr
M0113213 OGCMBMII_00013 16934 4 Skin 0.11 protein_coding synonymous_variant LOW 984C>T Gly328Gly
M0113214 OGCMBMII_00013 17001 4 Skin 0.11 protein_coding missense_variant MODERATE 1051A>G Asn351Asp
M0113215 OGCMBMII_00013 17012 4 Skin 0.11 protein_coding synonymous_variant LOW 1062C>T Asp354Asp
M0113216 OGCMBMII_00014 17219 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -133T>G None
M0113217 OGCMBMII_00014 17306 7 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -46G>A None
M0113218 OGCMBMII_00014 17395 3 Skin 0.08 protein_coding missense_variant MODERATE 44T>C Val15Ala
M0113219 OGCMBMII_00014 17609 3 Skin 0.08 protein_coding synonymous_variant LOW 258C>T Thr86Thr
M0113220 OGCMBMII_00014 17798 5 Skin 0.14 protein_coding synonymous_variant LOW 447C>T Asp149Asp
M0113221 OGCMBMII_00014 18322 3 Skin 0.08 protein_coding missense_variant MODERATE 971G>A Arg324Lys
M0113222 OGCMBMII_00015 18372 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -192C>T None
M0113223 OGCMBMII_00001 484 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -56C>T None
M0113224 OGCMBMII_00001 530 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -10A>G None
M0113225 OGCMBMII_00002 3042 4 Skin 0.11 protein_coding synonymous_variant LOW 615C>A Gly205Gly
M0113226 OGCMBMII_00002 3051 3 Skin 0.08 protein_coding synonymous_variant LOW 624C>T Phe208Phe
M0113227 OGCMBMII_00002 3135 3 Skin 0.08 protein_coding synonymous_variant LOW 708C>T Ile236Ile
M0113228 OGCMBMII_00003 4095 8 Skin 0.22 protein_coding missense_variant MODERATE 100A>C Lys34Gln
M0113229 OGCMBMII_00013 15974 3 Skin 0.08 protein_coding synonymous_variant LOW 24C>T Ser8Ser
M0113230 OGCMBMII_00016 18782 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -197T>A None
M0113231 OGCMBMII_00016 18788 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -191C>T None
M0113232 OGCMBMII_00001 121 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -419T>C None
M0113233 OGCMBMII_00001 155 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -385T>A None
M0113234 OGCMBMII_00001 162 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -378G>A None
M0113235 OGCMBMII_00001 662 3 Skin 0.08 protein_coding synonymous_variant LOW 123T>C Asn41Asn
M0113236 OGCMBMII_00001 707 3 Skin 0.08 protein_coding synonymous_variant LOW 168T>C Asn56Asn
M0113237 OGCMBMII_00001 728 3 Skin 0.08 protein_coding synonymous_variant LOW 189T>C Thr63Thr
M0113238 OGCMBMII_00001 759 3 Skin 0.08 protein_coding missense_variant MODERATE 220A>G Ile74Val
M0113239 OGCMBMII_00001 863 3 Skin 0.08 protein_coding synonymous_variant LOW 324T>C Asn108Asn
M0113240 OGCMBMII_00001 923 4 Skin 0.11 protein_coding synonymous_variant LOW 384G>A Gln128Gln
M0113241 OGCMBMII_00001 938 4 Skin 0.11 protein_coding synonymous_variant LOW 399G>A Val133Val
M0113242 OGCMBMII_00001 977 3 Skin 0.08 protein_coding synonymous_variant LOW 438T>C Gly146Gly
M0113243 OGCMBMII_00001 1005 4 Skin 0.11 protein_coding synonymous_variant LOW 466C>T Leu156Leu
M0113244 OGCMBMII_00001 1238 3 Skin 0.08 protein_coding synonymous_variant LOW 699A>T Pro233Pro
M0113245 OGCMBMII_00001 1280 3 Skin 0.08 protein_coding synonymous_variant LOW 741C>A Ile247Ile
M0113246 OGCMBMII_00001 1304 3 Skin 0.08 protein_coding synonymous_variant LOW 765T>G Val255Val
M0113247 OGCMBMII_00001 1347 3 Skin 0.08 protein_coding synonymous_variant LOW 808C>T Leu270Leu
M0113248 OGCMBMII_00001 1679 3 Skin 0.08 protein_coding synonymous_variant LOW 1140G>A Glu380Glu
M0113249 OGCMBMII_00001 236 4 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -304A>C None
M0113250 OGCMBMII_00001 1962 3 Skin 0.08 protein_coding missense_variant MODERATE 1423G>A Asp475Asn
M0113251 OGCMBMII_00001 1989 3 Skin 0.08 protein_coding missense_variant MODERATE 1450G>A Val484Ile
M0113252 OGCMBMII_00001 1198 3 Skin 0.08 protein_coding missense_variant MODERATE 659A>G Asn220Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OGCMBMII_00013 UZX46524.1|GH5 99.8 0 1 420 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term