Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1208
  Reference Plasmid   NZ_CP134829.1
  Reference Plasmid Size   29362
  Reference Plasmid GC Content   0.30
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0113253 MKPJGDFA_00012 15091 53 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4516T>A None
M0113254 MKPJGDFA_00012 15105 53 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4530A>G None
M0113255 MKPJGDFA_00012 15124 28 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -4549G>A None
M0113256 MKPJGDFA_00017 15153 28 Skin 0.28 protein_coding missense_variant MODERATE 246G>T Leu82Phe
M0113257 MKPJGDFA_00017 15345 9 Skin 0.09 protein_coding synonymous_variant LOW 54C>T Ala18Ala
M0113258 MKPJGDFA_00012 15494 51 Skin 0.52 protein_coding upstream_gene_variant MODIFIER -4919A>C None
M0113259 MKPJGDFA_00018 16092 31 Skin 0.31 protein_coding synonymous_variant LOW 520C>T Leu174Leu
M0113260 MKPJGDFA_00018 16362 55 Skin 0.56 protein_coding synonymous_variant LOW 790C>T Leu264Leu
M0113261 MKPJGDFA_00018 16719 56 Skin 0.57 protein_coding missense_variant MODERATE 1147T>C Ser383Pro
M0113262 MKPJGDFA_00018 16903 55 Skin 0.56 protein_coding missense_variant MODERATE 1331A>G Lys444Arg
M0113263 MKPJGDFA_00018 16910 5 Skin 0.05 protein_coding synonymous_variant LOW 1338C>A Thr446Thr
M0113264 MKPJGDFA_00014 16935 56 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -4788A>C None
M0113265 MKPJGDFA_00017 15371 32 Skin 0.32 protein_coding missense_variant MODERATE 28G>A Ala10Thr
M0113266 MKPJGDFA_00012 15104 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4529G>A None
M0113267 MKPJGDFA_00017 15282 15 Skin 0.15 protein_coding synonymous_variant LOW 117A>T Ile39Ile
M0113268 MKPJGDFA_00017 15314 3 Skin 0.03 protein_coding synonymous_variant LOW 85C>T Leu29Leu
M0113269 MKPJGDFA_00017 15394 4 Skin 0.04 protein_coding missense_variant MODERATE 5G>T Arg2Leu
M0113270 MKPJGDFA_00012 15403 10 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4828T>G None
M0113271 MKPJGDFA_00012 15409 14 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4834A>G None
M0113272 MKPJGDFA_00012 15422 18 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4847T>A None
M0113273 MKPJGDFA_00012 15423 7 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4848C>T None
M0113274 MKPJGDFA_00012 15439 19 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4864C>G None
M0113275 MKPJGDFA_00012 15480 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4905T>A None
M0113276 MKPJGDFA_00012 15495 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4920G>C None
M0113277 MKPJGDFA_00012 15549 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4974C>A None
M0113278 MKPJGDFA_00018 15719 25 Skin 0.25 protein_coding synonymous_variant LOW 147G>A Gly49Gly
M0113279 MKPJGDFA_00018 15734 4 Skin 0.04 protein_coding synonymous_variant LOW 162C>T Asn54Asn
M0113280 MKPJGDFA_00018 15764 24 Skin 0.24 protein_coding synonymous_variant LOW 192C>T Ser64Ser
M0113281 MKPJGDFA_00018 15779 25 Skin 0.25 protein_coding synonymous_variant LOW 207A>T Thr69Thr
M0113282 MKPJGDFA_00018 15824 15 Skin 0.15 protein_coding synonymous_variant LOW 252A>G Gly84Gly
M0113283 MKPJGDFA_00018 15875 24 Skin 0.24 protein_coding synonymous_variant LOW 303T>A Thr101Thr
M0113284 MKPJGDFA_00018 16304 19 Skin 0.19 protein_coding synonymous_variant LOW 732A>G Gly244Gly
M0113285 MKPJGDFA_00018 16307 9 Skin 0.09 protein_coding missense_variant MODERATE 735A>T Leu245Phe
M0113286 MKPJGDFA_00018 16731 12 Skin 0.12 protein_coding missense_variant MODERATE 1159A>G Ile387Val
M0113287 MKPJGDFA_00018 16745 13 Skin 0.13 protein_coding synonymous_variant LOW 1173C>T Val391Val
M0113288 MKPJGDFA_00018 16751 11 Skin 0.11 protein_coding synonymous_variant LOW 1179A>G Ser393Ser
M0113289 MKPJGDFA_00014 16945 22 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4798A>G None
M0113290 MKPJGDFA_00014 16979 15 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4832T>A None
M0113291 MKPJGDFA_00014 16981 19 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4834C>T None
M0113292 MKPJGDFA_00017 15237 6 Skin 0.06 protein_coding synonymous_variant LOW 162C>T Val54Val
M0113293 MKPJGDFA_00018 15728 7 Skin 0.07 protein_coding synonymous_variant LOW 156C>T Pro52Pro
M0113294 MKPJGDFA_00017 15338 4 Skin 0.04 protein_coding missense_variant MODERATE 61G>T Val21Phe
M0113295 MKPJGDFA_00017 15360 4 Skin 0.04 protein_coding synonymous_variant LOW 39C>T Phe13Phe
M0113296 MKPJGDFA_00017 15369 3 Skin 0.03 protein_coding synonymous_variant LOW 30A>C Ala10Ala
M0113297 MKPJGDFA_00012 15434 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4859A>C None
M0113298 MKPJGDFA_00012 15458 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4883A>T None
M0113299 MKPJGDFA_00012 15466 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4891A>T None
M0113300 MKPJGDFA_00012 15473 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4898T>G None
M0113301 MKPJGDFA_00012 15484 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4909A>G None
M0113302 MKPJGDFA_00012 15502 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4927T>G None
M0113303 MKPJGDFA_00012 15506 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4931C>A None
M0113304 MKPJGDFA_00012 15511 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4936T>C None
M0113305 MKPJGDFA_00012 15540 10 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4965C>G None
M0113306 MKPJGDFA_00018 15800 12 Skin 0.12 protein_coding synonymous_variant LOW 228T>C Val76Val
M0113307 MKPJGDFA_00018 15872 12 Skin 0.12 protein_coding synonymous_variant LOW 300C>T Val100Val
M0113308 MKPJGDFA_00018 16035 9 Skin 0.09 protein_coding missense_variant MODERATE 463T>A Cys155Ser
M0113309 MKPJGDFA_00018 16157 11 Skin 0.11 protein_coding synonymous_variant LOW 585T>C Asp195Asp
M0113310 MKPJGDFA_00018 16214 11 Skin 0.11 protein_coding synonymous_variant LOW 642T>C Gly214Gly
M0113311 MKPJGDFA_00018 16229 11 Skin 0.11 protein_coding synonymous_variant LOW 657C>T Val219Val
M0113312 MKPJGDFA_00018 16272 12 Skin 0.12 protein_coding synonymous_variant LOW 700T>C Leu234Leu
M0113313 MKPJGDFA_00018 16325 12 Skin 0.12 protein_coding synonymous_variant LOW 753G>A Thr251Thr
M0113314 MKPJGDFA_00018 16551 9 Skin 0.09 protein_coding missense_variant MODERATE 979A>G Ile327Val
M0113315 MKPJGDFA_00018 16577 10 Skin 0.10 protein_coding synonymous_variant LOW 1005G>A Thr335Thr
M0113316 MKPJGDFA_00018 16611 9 Skin 0.09 protein_coding synonymous_variant LOW 1039A>C Arg347Arg
M0113317 MKPJGDFA_00018 16823 7 Skin 0.07 protein_coding synonymous_variant LOW 1251C>T Ile417Ile
M0113318 MKPJGDFA_00018 16919 3 Skin 0.03 protein_coding synonymous_variant LOW 1347C>T His449His
M0113319 MKPJGDFA_00014 16980 10 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4833C>T None
M0113320 MKPJGDFA_00018 16067 11 Skin 0.11 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0113321 MKPJGDFA_00018 16220 3 Skin 0.03 protein_coding synonymous_variant LOW 648A>G Gly216Gly
M0113322 MKPJGDFA_00018 16490 5 Skin 0.05 protein_coding synonymous_variant LOW 918C>T Leu306Leu
M0113323 MKPJGDFA_00012 15558 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4983G>A None
M0113324 MKPJGDFA_00012 15415 10 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4840T>C None
M0113325 MKPJGDFA_00014 16992 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4845T>G None
M0113326 MKPJGDFA_00021 24648 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4730A>C None
M0113327 MKPJGDFA_00021 24824 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4906A>C None
M0113328 MKPJGDFA_00021 24896 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4978G>A None
M0113329 MKPJGDFA_00021 24905 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4987C>T None
M0113330 MKPJGDFA_00021 24911 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4993T>C None
M0113331 MKPJGDFA_00022 24937 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4651C>T None
M0113332 MKPJGDFA_00022 24946 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4660T>A None
M0113333 MKPJGDFA_00022 25185 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4899C>A None
M0113334 MKPJGDFA_00014 16955 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4808T>C None
M0113335 MKPJGDFA_00014 16969 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4822T>A None
M0113336 MKPJGDFA_00018 15710 3 Skin 0.03 protein_coding synonymous_variant LOW 138C>T Pro46Pro
M0113337 MKPJGDFA_00018 15725 3 Skin 0.03 protein_coding synonymous_variant LOW 153A>G Lys51Lys
M0113338 MKPJGDFA_00018 15726 3 Skin 0.03 protein_coding missense_variant MODERATE 154C>T Pro52Ser
M0113339 MKPJGDFA_00018 16409 3 Skin 0.03 protein_coding synonymous_variant LOW 837A>G Ser279Ser
M0113340 MKPJGDFA_00018 16535 6 Skin 0.06 protein_coding synonymous_variant LOW 963G>A Lys321Lys
M0113341 MKPJGDFA_00026 23031 3 Skin 0.03 protein_coding synonymous_variant LOW 237C>T Asp79Asp
M0113342 MKPJGDFA_00026 23091 3 Skin 0.03 protein_coding synonymous_variant LOW 297A>G Ala99Ala
M0113343 MKPJGDFA_00026 23094 3 Skin 0.03 protein_coding synonymous_variant LOW 300T>C His100His
M0113344 MKPJGDFA_00026 23098 3 Skin 0.03 protein_coding missense_variant MODERATE 304C>A His102Asn
M0113345 MKPJGDFA_00026 23130 3 Skin 0.03 protein_coding synonymous_variant LOW 336G>A Ala112Ala
M0113346 MKPJGDFA_00026 23352 3 Skin 0.03 protein_coding synonymous_variant LOW 558G>T Val186Val
M0113347 MKPJGDFA_00021 24524 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4606T>A None
M0113348 MKPJGDFA_00021 24534 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4616C>T None
M0113349 MKPJGDFA_00024 25720 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3586A>C None
M0113350 MKPJGDFA_00012 15088 7 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4513A>T None
M0113351 MKPJGDFA_00017 15160 5 Skin 0.05 protein_coding missense_variant MODERATE 239A>C Tyr80Ser
M0113352 MKPJGDFA_00012 15058 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4483G>A None
M0113353 MKPJGDFA_00017 15299 3 Skin 0.03 protein_coding synonymous_variant LOW 100C>T Leu34Leu
M0113354 MKPJGDFA_00024 21292 6 Skin 0.06 protein_coding synonymous_variant LOW 843T>C Ala281Ala
M0113355 MKPJGDFA_00017 15163 4 Skin 0.04 protein_coding missense_variant MODERATE 236A>T Tyr79Phe
M0113356 MKPJGDFA_00012 15100 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4525C>T None
M0113357 MKPJGDFA_00012 15112 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4537A>G None
M0113358 MKPJGDFA_00012 15114 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4539T>A None
M0113359 MKPJGDFA_00010 12376 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4585A>G None
M0113360 MKPJGDFA_00010 12448 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4657T>C None
M0113361 MKPJGDFA_00015 12794 6 Skin 0.06 protein_coding synonymous_variant LOW 322C>T Leu108Leu
M0113362 MKPJGDFA_00017 15222 3 Skin 0.03 protein_coding synonymous_variant LOW 177C>T His59His
M0113363 MKPJGDFA_00017 15246 3 Skin 0.03 protein_coding synonymous_variant LOW 153G>T Gly51Gly
M0113364 MKPJGDFA_00017 20336 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4938C>T None
M0113365 MKPJGDFA_00017 20339 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4941T>A None
M0113366 MKPJGDFA_00021 22145 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2227G>A None
M0113367 MKPJGDFA_00021 22146 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2228A>G None
M0113368 MKPJGDFA_00009 11316 7 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4258T>C None
M0113369 MKPJGDFA_00014 12022 4 Skin 0.04 protein_coding synonymous_variant LOW 126A>G Gln42Gln
M0113370 MKPJGDFA_00014 12055 4 Skin 0.04 protein_coding synonymous_variant LOW 93A>T Arg31Arg
M0113371 MKPJGDFA_00014 12079 4 Skin 0.04 protein_coding synonymous_variant LOW 69G>A Ser23Ser
M0113372 MKPJGDFA_00014 12123 4 Skin 0.04 protein_coding missense_variant MODERATE 25T>G Ser9Ala
M0113373 MKPJGDFA_00014 12124 4 Skin 0.04 protein_coding synonymous_variant LOW 24C>T Tyr8Tyr
M0113374 MKPJGDFA_00010 12168 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4377T>G None
M0113375 MKPJGDFA_00010 12211 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4420C>T None
M0113376 MKPJGDFA_00010 12216 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4425A>G None
M0113377 MKPJGDFA_00010 12264 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4473G>A None
M0113378 MKPJGDFA_00010 12283 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4492G>A None
M0113379 MKPJGDFA_00010 12288 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4497G>A None
M0113380 MKPJGDFA_00009 11315 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4257G>C None
M0113381 MKPJGDFA_00009 11317 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4259G>C None
M0113382 MKPJGDFA_00014 11443 3 Skin 0.03 protein_coding synonymous_variant LOW 705A>G Arg235Arg
M0113383 MKPJGDFA_00014 11747 3 Skin 0.03 protein_coding missense_variant MODERATE 401G>A Cys134Tyr
M0113384 MKPJGDFA_00014 11786 3 Skin 0.03 protein_coding missense_variant MODERATE 362A>C Glu121Ala
M0113385 MKPJGDFA_00014 11800 3 Skin 0.03 protein_coding synonymous_variant LOW 348T>A Thr116Thr
M0113386 MKPJGDFA_00014 11822 3 Skin 0.03 protein_coding missense_variant MODERATE 326A>T Lys109Met
M0113387 MKPJGDFA_00014 11829 3 Skin 0.03 protein_coding missense_variant MODERATE 319A>G Thr107Ala
M0113388 MKPJGDFA_00014 11860 3 Skin 0.03 protein_coding synonymous_variant LOW 288T>C Ile96Ile
M0113389 MKPJGDFA_00014 11865 3 Skin 0.03 protein_coding synonymous_variant LOW 283C>T Leu95Leu
M0113390 MKPJGDFA_00014 11869 3 Skin 0.03 protein_coding synonymous_variant LOW 279C>T Ile93Ile
M0113391 MKPJGDFA_00014 11872 3 Skin 0.03 protein_coding synonymous_variant LOW 276A>G Leu92Leu
M0113392 MKPJGDFA_00014 11874 3 Skin 0.03 protein_coding synonymous_variant LOW 274T>C Leu92Leu
M0113393 MKPJGDFA_00014 11896 3 Skin 0.03 protein_coding synonymous_variant LOW 252C>T Ile84Ile
M0113394 MKPJGDFA_00014 11905 3 Skin 0.03 protein_coding synonymous_variant LOW 243G>A Gly81Gly
M0113395 MKPJGDFA_00014 11968 3 Skin 0.03 protein_coding synonymous_variant LOW 180G>A Leu60Leu
M0113396 MKPJGDFA_00015 12484 3 Skin 0.03 protein_coding synonymous_variant LOW 12G>A Thr4Thr
M0113397 MKPJGDFA_00015 12491 3 Skin 0.03 protein_coding missense_variant MODERATE 19A>G Ile7Val
M0113398 MKPJGDFA_00015 12499 3 Skin 0.03 protein_coding synonymous_variant LOW 27G>A Arg9Arg
M0113399 MKPJGDFA_00015 12500 3 Skin 0.03 protein_coding missense_variant MODERATE 28G>A Glu10Lys
M0113400 MKPJGDFA_00015 12502 3 Skin 0.03 protein_coding missense_variant MODERATE 30A>T Glu10Asp
M0113401 MKPJGDFA_00015 12503 3 Skin 0.03 protein_coding missense_variant MODERATE 31A>G Ile11Val
M0113402 MKPJGDFA_00015 12518 3 Skin 0.03 protein_coding missense_variant MODERATE 46G>A Val16Ile
M0113403 MKPJGDFA_00015 12536 3 Skin 0.03 protein_coding missense_variant MODERATE 64G>A Ala22Thr
M0113404 MKPJGDFA_00015 12694 3 Skin 0.03 protein_coding synonymous_variant LOW 222A>G Gly74Gly
M0113405 MKPJGDFA_00015 13012 3 Skin 0.03 protein_coding synonymous_variant LOW 540C>T Ala180Ala
M0113406 MKPJGDFA_00016 13582 3 Skin 0.03 protein_coding missense_variant MODERATE 161T>C Val54Ala
M0113407 MKPJGDFA_00016 13817 3 Skin 0.03 protein_coding synonymous_variant LOW 396T>C Phe132Phe
M0113408 MKPJGDFA_00016 14036 3 Skin 0.03 protein_coding synonymous_variant LOW 615T>C His205His
M0113409 MKPJGDFA_00016 14297 3 Skin 0.03 protein_coding synonymous_variant LOW 876A>G Gly292Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MKPJGDFA_00009 PHI:2634 argF 84 9.2e-165 1 332 1.0000 0.9970 rodents community-acquired infection; nosocomial infection ornithine carbamoyltransferase unaffected pathogenicity
MKPJGDFA_00012 PHI:10470 arcA 78.8 2.9e-192 1 411 1.0000 1.0000 rodents skin infection arginine deiminase unaffected pathogenicity
MKPJGDFA_00024 PHI:6191 Lqo 81.3 2.7e-245 1 497 0.9980 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence
POONFNEN_00009 PHI:2634 argF 84 9.2e-165 1 332 1.0000 0.9970 rodents community-acquired infection; nosocomial infection ornithine carbamoyltransferase unaffected pathogenicity
POONFNEN_00012 PHI:10470 arcA 78.8 2.9e-192 1 411 1.0000 1.0000 rodents skin infection arginine deiminase unaffected pathogenicity
POONFNEN_00024 PHI:6191 Lqo 81.3 2.7e-245 1 497 0.9980 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MKPJGDFA_00018 2.A.38.4.6 74.9 5.6e-181 18 452 0.9624 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.38 The K+ Transporter (Trk) Family
POONFNEN_00018 2.A.38.4.6 74.9 5.6e-181 18 452 0.9624 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.38 The K+ Transporter (Trk) Family