Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1211
  Reference Plasmid   NZ_CP135142.1
  Reference Plasmid Size   11278
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0114424 DGLMKENP_00001 77 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -178C>A None
M0114425 DGLMKENP_00001 88 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -167T>C None
M0114426 DGLMKENP_00001 117 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -138A>G None
M0114427 DGLMKENP_00001 122 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -133T>C None
M0114428 DGLMKENP_00001 141 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -114G>A None
M0114429 DGLMKENP_00001 157 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -98C>A None
M0114430 DGLMKENP_00001 197 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -58T>C None
M0114431 DGLMKENP_00001 234 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -21G>T None
M0114432 DGLMKENP_00001 356 4 Skin 0.25 protein_coding synonymous_variant LOW 102A>G Val34Val
M0114433 DGLMKENP_00002 583 3 Skin 0.19 protein_coding synonymous_variant LOW 51G>T Ala17Ala
M0114434 DGLMKENP_00002 622 3 Skin 0.19 protein_coding synonymous_variant LOW 90T>C Asp30Asp
M0114435 DGLMKENP_00016 10417 3 Skin 0.19 protein_coding missense_variant MODERATE 131T>C Val44Ala
M0114436 DGLMKENP_00016 10470 3 Skin 0.19 protein_coding synonymous_variant LOW 78C>T Ala26Ala
M0114437 DGLMKENP_00012 10564 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2345T>A None
M0114438 DGLMKENP_00012 10572 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2353T>A None
M0114439 DGLMKENP_00012 10575 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2356G>A None
M0114440 DGLMKENP_00012 10617 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2398A>C None
M0114441 DGLMKENP_00012 10701 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2482A>G None
M0114442 DGLMKENP_00012 10706 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2487T>G None
M0114443 DGLMKENP_00012 10757 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2538C>G None
M0114444 DGLMKENP_00012 10764 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2545G>C None
M0114445 DGLMKENP_00012 10821 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2602G>A None
M0114446 DGLMKENP_00012 10868 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2649A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term