Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1221
  Reference Plasmid   NZ_CP136424.1
  Reference Plasmid Size   7176
  Reference Plasmid GC Content   0.48
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0199843 EAOCOPNJ_00007 3117 5 Gut 0.06 protein_coding missense_variant MODERATE 70A>G Ile24Val
M0199844 EAOCOPNJ_00007 3155 5 Gut 0.06 protein_coding synonymous_variant LOW 108T>C Gly36Gly
M0199845 EAOCOPNJ_00008 3248 5 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -345G>A None
M0199846 EAOCOPNJ_00008 3274 5 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -319C>T None
M0199847 EAOCOPNJ_00008 3391 17 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -202A>C None
M0199848 EAOCOPNJ_00008 3544 10 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -49A>G None
M0199849 EAOCOPNJ_00008 3589 14 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4A>G None
M0199850 EAOCOPNJ_00008 3670 10 Gut 0.11 protein_coding synonymous_variant LOW 78C>T Asp26Asp
M0199851 EAOCOPNJ_00008 3697 12 Gut 0.13 protein_coding synonymous_variant LOW 105G>A Lys35Lys
M0199852 EAOCOPNJ_00008 3727 15 Gut 0.17 protein_coding synonymous_variant LOW 135T>C Phe45Phe
M0199853 EAOCOPNJ_00008 3826 18 Gut 0.20 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0199854 EAOCOPNJ_00008 3901 14 Gut 0.16 protein_coding synonymous_variant LOW 309G>T Pro103Pro
M0199855 EAOCOPNJ_00008 3935 20 Gut 0.22 protein_coding synonymous_variant LOW 343A>C Arg115Arg
M0199856 EAOCOPNJ_00008 3952 13 Gut 0.14 protein_coding synonymous_variant LOW 360A>G Gln120Gln
M0199857 EAOCOPNJ_00008 3967 20 Gut 0.22 protein_coding synonymous_variant LOW 375A>G Gln125Gln
M0199858 EAOCOPNJ_00008 3976 20 Gut 0.22 protein_coding synonymous_variant LOW 384G>A Glu128Glu
M0199859 EAOCOPNJ_00008 3980 10 Gut 0.11 protein_coding missense_variant MODERATE 388C>A Leu130Ile
M0199860 EAOCOPNJ_00008 3982 20 Gut 0.22 protein_coding synonymous_variant LOW 390T>G Leu130Leu
M0199861 EAOCOPNJ_00008 3988 9 Gut 0.10 protein_coding synonymous_variant LOW 396G>A Arg132Arg
M0199862 EAOCOPNJ_00008 3997 10 Gut 0.11 protein_coding synonymous_variant LOW 405G>C Thr135Thr
M0199863 EAOCOPNJ_00008 4054 7 Gut 0.08 protein_coding synonymous_variant LOW 462G>T Ala154Ala
M0199864 EAOCOPNJ_00008 4069 15 Gut 0.17 protein_coding synonymous_variant LOW 477C>T Ile159Ile
M0199865 EAOCOPNJ_00008 4091 8 Gut 0.09 protein_coding missense_variant MODERATE 499C>G Pro167Ala
M0199866 EAOCOPNJ_00008 4092 7 Gut 0.08 protein_coding missense_variant MODERATE 500C>A Pro167His
M0199867 EAOCOPNJ_00008 4093 7 Gut 0.08 protein_coding synonymous_variant LOW 501T>G Pro167Pro
M0199868 EAOCOPNJ_00008 4095 7 Gut 0.08 protein_coding missense_variant MODERATE 503A>G His168Arg
M0199869 EAOCOPNJ_00008 4105 7 Gut 0.08 protein_coding synonymous_variant LOW 513G>A Leu171Leu
M0199870 EAOCOPNJ_00008 4117 24 Gut 0.27 protein_coding synonymous_variant LOW 525G>A Arg175Arg
M0199871 EAOCOPNJ_00008 4142 14 Gut 0.16 protein_coding missense_variant MODERATE 550G>A Val184Ile
M0199872 EAOCOPNJ_00008 4158 15 Gut 0.17 protein_coding missense_variant MODERATE 566T>C Ile189Thr
M0199873 EAOCOPNJ_00008 4162 7 Gut 0.08 protein_coding synonymous_variant LOW 570G>A Ala190Ala
M0199874 EAOCOPNJ_00008 4184 20 Gut 0.22 protein_coding synonymous_variant LOW 592T>C Leu198Leu
M0199875 EAOCOPNJ_00008 4246 9 Gut 0.10 protein_coding synonymous_variant LOW 654C>T Val218Val
M0199876 EAOCOPNJ_00008 4270 20 Gut 0.22 protein_coding synonymous_variant LOW 678A>G Gln226Gln
M0199877 EAOCOPNJ_00008 4273 20 Gut 0.22 protein_coding synonymous_variant LOW 681A>G Pro227Pro
M0199878 EAOCOPNJ_00008 4351 23 Gut 0.26 protein_coding synonymous_variant LOW 759T>C Gly253Gly
M0199879 EAOCOPNJ_00008 4432 8 Gut 0.09 protein_coding synonymous_variant LOW 840G>A Lys280Lys
M0199880 EAOCOPNJ_00008 4454 28 Gut 0.31 protein_coding missense_variant MODERATE 862A>C Lys288Gln
M0199881 EAOCOPNJ_00008 4495 20 Gut 0.22 protein_coding synonymous_variant LOW 903C>G Val301Val
M0199882 EAOCOPNJ_00008 4508 22 Gut 0.24 protein_coding missense_variant MODERATE 916A>G Lys306Glu
M0199883 EAOCOPNJ_00008 4548 17 Gut 0.19 protein_coding missense_variant MODERATE 956A>G Gln319Arg
M0199884 EAOCOPNJ_00008 4639 9 Gut 0.10 protein_coding synonymous_variant LOW 1047T>A Pro349Pro
M0199885 EAOCOPNJ_00008 4663 12 Gut 0.13 protein_coding synonymous_variant LOW 1071A>G Glu357Glu
M0199886 EAOCOPNJ_00008 4669 11 Gut 0.12 protein_coding synonymous_variant LOW 1077G>A Glu359Glu
M0199887 EAOCOPNJ_00008 4677 7 Gut 0.08 protein_coding missense_variant MODERATE 1085G>A Arg362Gln
M0199888 EAOCOPNJ_00008 4703 18 Gut 0.20 protein_coding synonymous_variant LOW 1111T>C Leu371Leu
M0199889 EAOCOPNJ_00009 4725 7 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -224G>A None
M0199890 EAOCOPNJ_00009 4885 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -64T>C None
M0199891 EAOCOPNJ_00009 4899 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -50T>A None
M0199892 EAOCOPNJ_00009 4916 11 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -33T>C None
M0199893 EAOCOPNJ_00009 4923 5 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -26G>T None
M0199894 EAOCOPNJ_00009 5096 11 Gut 0.12 protein_coding missense_variant MODERATE 148A>G Met50Val
M0199895 EAOCOPNJ_00010 5136 10 Gut 0.11 protein_coding missense_variant MODERATE 5C>A Ala2Glu
M0199896 EAOCOPNJ_00010 5148 24 Gut 0.27 protein_coding missense_variant MODERATE 17T>C Val6Ala
M0199897 EAOCOPNJ_00010 5152 22 Gut 0.24 protein_coding synonymous_variant LOW 21A>C Ala7Ala
M0199898 EAOCOPNJ_00010 5160 7 Gut 0.08 protein_coding missense_variant MODERATE 29G>A Arg10Gln
M0199899 EAOCOPNJ_00010 5164 7 Gut 0.08 protein_coding synonymous_variant LOW 33G>C Leu11Leu
M0199900 EAOCOPNJ_00010 5188 9 Gut 0.10 protein_coding synonymous_variant LOW 57C>T Asn19Asn
M0199901 EAOCOPNJ_00010 5209 23 Gut 0.26 protein_coding synonymous_variant LOW 78A>G Leu26Leu
M0199902 EAOCOPNJ_00010 5318 23 Gut 0.26 protein_coding missense_variant MODERATE 187G>A Ala63Thr
M0199903 EAOCOPNJ_00010 5320 23 Gut 0.26 protein_coding synonymous_variant LOW 189C>G Ala63Ala
M0199904 EAOCOPNJ_00010 5324 23 Gut 0.26 protein_coding missense_variant MODERATE 193A>G Ser65Gly
M0199905 EAOCOPNJ_00010 5337 8 Gut 0.09 protein_coding missense_variant MODERATE 206A>G Lys69Arg
M0199906 EAOCOPNJ_00010 5350 10 Gut 0.11 protein_coding synonymous_variant LOW 219T>C Ile73Ile
M0199907 EAOCOPNJ_00010 5386 23 Gut 0.26 protein_coding synonymous_variant LOW 255A>C Arg85Arg
M0199908 EAOCOPNJ_00010 5393 23 Gut 0.26 protein_coding missense_variant MODERATE 262G>A Val88Ile
M0199909 EAOCOPNJ_00010 5417 6 Gut 0.07 protein_coding synonymous_variant LOW 286C>A Arg96Arg
M0199910 EAOCOPNJ_00010 5440 13 Gut 0.14 protein_coding synonymous_variant LOW 309C>T Phe103Phe
M0199911 EAOCOPNJ_00010 5470 23 Gut 0.26 protein_coding synonymous_variant LOW 339A>G Gly113Gly
M0199912 EAOCOPNJ_00010 5472 11 Gut 0.12 protein_coding missense_variant MODERATE 341G>T Arg114Leu
M0199913 EAOCOPNJ_00010 5509 9 Gut 0.10 protein_coding synonymous_variant LOW 378C>T Ala126Ala
M0199914 EAOCOPNJ_00010 5510 12 Gut 0.13 protein_coding synonymous_variant LOW 379C>T Leu127Leu
M0199915 EAOCOPNJ_00010 5522 22 Gut 0.24 protein_coding synonymous_variant LOW 391T>C Leu131Leu
M0199916 EAOCOPNJ_00010 5527 22 Gut 0.24 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0199917 EAOCOPNJ_00010 5533 9 Gut 0.10 protein_coding synonymous_variant LOW 402G>A Val134Val
M0199918 EAOCOPNJ_00010 5582 8 Gut 0.09 protein_coding synonymous_variant LOW 451C>T Leu151Leu
M0199919 EAOCOPNJ_00010 5690 5 Gut 0.06 protein_coding synonymous_variant LOW 559C>T Leu187Leu
M0199920 EAOCOPNJ_00010 5707 6 Gut 0.07 protein_coding synonymous_variant LOW 576C>T Thr192Thr
M0199921 EAOCOPNJ_00010 5749 5 Gut 0.06 protein_coding synonymous_variant LOW 618G>A Pro206Pro
M0199922 EAOCOPNJ_00010 5773 6 Gut 0.07 protein_coding synonymous_variant LOW 642C>A Gly214Gly
M0199923 EAOCOPNJ_00010 5791 21 Gut 0.23 protein_coding synonymous_variant LOW 660T>C Ser220Ser
M0199924 EAOCOPNJ_00010 5856 5 Gut 0.06 protein_coding missense_variant MODERATE 725C>T Ala242Val
M0199925 EAOCOPNJ_00010 5893 15 Gut 0.17 protein_coding synonymous_variant LOW 762A>G Glu254Glu
M0199926 EAOCOPNJ_00010 5908 11 Gut 0.12 protein_coding synonymous_variant LOW 777G>A Glu259Glu
M0199927 EAOCOPNJ_00010 5929 21 Gut 0.23 protein_coding synonymous_variant LOW 798A>C Arg266Arg
M0199928 EAOCOPNJ_00010 5984 20 Gut 0.22 protein_coding missense_variant MODERATE 853A>G Ile285Val
M0199929 EAOCOPNJ_00010 6115 22 Gut 0.24 protein_coding synonymous_variant LOW 984G>A Lys328Lys
M0199930 EAOCOPNJ_00010 6166 20 Gut 0.22 protein_coding synonymous_variant LOW 1035T>C Leu345Leu
M0199931 EAOCOPNJ_00010 6172 3 Gut 0.03 protein_coding synonymous_variant LOW 1041C>T Pro347Pro
M0199932 EAOCOPNJ_00010 6208 4 Gut 0.04 protein_coding synonymous_variant LOW 1077T>C Phe359Phe
M0199933 EAOCOPNJ_00010 6211 3 Gut 0.03 protein_coding synonymous_variant LOW 1080A>G Thr360Thr
M0199934 EAOCOPNJ_00010 6235 22 Gut 0.24 protein_coding synonymous_variant LOW 1104T>G Leu368Leu
M0199935 EAOCOPNJ_00010 6295 3 Gut 0.03 protein_coding synonymous_variant LOW 1164C>T Gly388Gly
M0199936 EAOCOPNJ_00010 6313 3 Gut 0.03 protein_coding synonymous_variant LOW 1182T>C Asn394Asn
M0199937 EAOCOPNJ_00010 6385 3 Gut 0.03 protein_coding synonymous_variant LOW 1254C>T Ala418Ala
M0199938 EAOCOPNJ_00010 6412 5 Gut 0.06 protein_coding synonymous_variant LOW 1281T>C Asn427Asn
M0199939 EAOCOPNJ_00010 6421 12 Gut 0.13 protein_coding synonymous_variant LOW 1290A>T Pro430Pro
M0199940 EAOCOPNJ_00010 6481 18 Gut 0.20 protein_coding synonymous_variant LOW 1350A>G Gly450Gly
M0199941 EAOCOPNJ_00010 6532 14 Gut 0.16 protein_coding synonymous_variant LOW 1401T>C Arg467Arg
M0199942 EAOCOPNJ_00010 6547 7 Gut 0.08 protein_coding synonymous_variant LOW 1416C>T Cys472Cys
M0199943 EAOCOPNJ_00010 6631 5 Gut 0.06 protein_coding synonymous_variant LOW 1500C>T Asp500Asp
M0199944 EAOCOPNJ_00010 6637 19 Gut 0.21 protein_coding synonymous_variant LOW 1506A>G Leu502Leu
M0199945 EAOCOPNJ_00004 6735 8 Gut 0.09 protein_coding downstream_gene_variant MODIFIER *4906T>C None
M0199946 EAOCOPNJ_00004 6739 5 Gut 0.06 protein_coding downstream_gene_variant MODIFIER *4910C>T None
M0199947 EAOCOPNJ_00004 6740 5 Gut 0.06 protein_coding downstream_gene_variant MODIFIER *4911C>T None
M0199948 EAOCOPNJ_00004 6741 6 Gut 0.07 protein_coding downstream_gene_variant MODIFIER *4912C>T None
M0199949 EAOCOPNJ_00004 6742 15 Gut 0.17 protein_coding downstream_gene_variant MODIFIER *4913A>G None
M0199950 EAOCOPNJ_00004 6829 7 Gut 0.08 protein_coding downstream_gene_variant MODIFIER *5000C>T None
M0199951 EAOCOPNJ_00005 6836 9 Gut 0.10 protein_coding downstream_gene_variant MODIFIER *4061T>C None
M0199952 EAOCOPNJ_00005 6884 5 Gut 0.06 protein_coding downstream_gene_variant MODIFIER *4109G>A None
M0199953 EAOCOPNJ_00005 7022 5 Gut 0.06 protein_coding downstream_gene_variant MODIFIER *4247T>G None
M0199954 EAOCOPNJ_00005 7026 5 Gut 0.06 protein_coding downstream_gene_variant MODIFIER *4251A>C None
M0199955 EAOCOPNJ_00005 7058 12 Gut 0.13 protein_coding downstream_gene_variant MODIFIER *4283T>C None
M0199956 EAOCOPNJ_00005 7064 12 Gut 0.13 protein_coding downstream_gene_variant MODIFIER *4289A>G None
M0199957 EAOCOPNJ_00005 7082 7 Gut 0.08 protein_coding downstream_gene_variant MODIFIER *4307C>T None
M0199958 EAOCOPNJ_00005 7127 11 Gut 0.12 protein_coding downstream_gene_variant MODIFIER *4352T>C None
M0199959 EAOCOPNJ_00010 6161 18 Gut 0.20 protein_coding synonymous_variant LOW 1030T>C Leu344Leu
M0199960 EAOCOPNJ_00010 6232 4 Gut 0.04 protein_coding synonymous_variant LOW 1101C>T Ala367Ala
M0199961 EAOCOPNJ_00010 6238 10 Gut 0.11 protein_coding synonymous_variant LOW 1107G>A Glu369Glu
M0199962 EAOCOPNJ_00010 6247 8 Gut 0.09 protein_coding synonymous_variant LOW 1116C>T Asn372Asn
M0199963 EAOCOPNJ_00009 4968 3 Gut 0.03 protein_coding missense_variant MODERATE 20T>G Val7Gly
M0199964 EAOCOPNJ_00010 5875 4 Gut 0.04 protein_coding synonymous_variant LOW 744C>T Ile248Ile
M0199965 EAOCOPNJ_00010 5314 16 Gut 0.18 protein_coding synonymous_variant LOW 183A>G Thr61Thr
M0199966 EAOCOPNJ_00010 6157 5 Gut 0.06 protein_coding synonymous_variant LOW 1026C>T Phe342Phe
M0199967 EAOCOPNJ_00008 3324 5 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -269G>A None
M0199968 EAOCOPNJ_00008 3400 6 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -193A>T None
M0199969 EAOCOPNJ_00008 3402 6 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -191T>G None
M0199970 EAOCOPNJ_00008 3466 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -127C>T None
M0199971 EAOCOPNJ_00008 4237 3 Gut 0.03 protein_coding synonymous_variant LOW 645G>T Val215Val
M0199972 EAOCOPNJ_00008 4264 10 Gut 0.11 protein_coding synonymous_variant LOW 672G>A Ala224Ala
M0199973 EAOCOPNJ_00008 4303 16 Gut 0.18 protein_coding synonymous_variant LOW 711T>C Gly237Gly
M0199974 EAOCOPNJ_00008 4422 8 Gut 0.09 protein_coding missense_variant MODERATE 830T>C Met277Thr
M0199975 EAOCOPNJ_00008 4520 8 Gut 0.09 protein_coding missense_variant MODERATE 928T>C Trp310Arg
M0199976 EAOCOPNJ_00008 4528 15 Gut 0.17 protein_coding synonymous_variant LOW 936T>C Arg312Arg
M0199977 EAOCOPNJ_00008 4532 7 Gut 0.08 protein_coding missense_variant MODERATE 940A>T Ile314Phe
M0199978 EAOCOPNJ_00008 4573 8 Gut 0.09 protein_coding synonymous_variant LOW 981C>T Asp327Asp
M0199979 EAOCOPNJ_00008 4576 10 Gut 0.11 protein_coding synonymous_variant LOW 984T>C Phe328Phe
M0199980 EAOCOPNJ_00008 4584 14 Gut 0.16 protein_coding missense_variant MODERATE 992A>G Gln331Arg
M0199981 EAOCOPNJ_00010 5176 5 Gut 0.06 protein_coding synonymous_variant LOW 45C>T Tyr15Tyr
M0199982 EAOCOPNJ_00010 5452 4 Gut 0.04 protein_coding synonymous_variant LOW 321C>A Ser107Ser
M0199983 EAOCOPNJ_00010 5461 4 Gut 0.04 protein_coding synonymous_variant LOW 330C>T Ser110Ser
M0199984 EAOCOPNJ_00010 5495 8 Gut 0.09 protein_coding synonymous_variant LOW 364C>A Arg122Arg
M0199985 EAOCOPNJ_00010 5503 3 Gut 0.03 protein_coding synonymous_variant LOW 372C>T Leu124Leu
M0199986 EAOCOPNJ_00010 5515 6 Gut 0.07 protein_coding synonymous_variant LOW 384C>G Val128Val
M0199987 EAOCOPNJ_00010 5815 3 Gut 0.03 protein_coding synonymous_variant LOW 684C>T Tyr228Tyr
M0199988 EAOCOPNJ_00010 5839 8 Gut 0.09 protein_coding synonymous_variant LOW 708C>T Gly236Gly
M0199989 EAOCOPNJ_00010 5989 7 Gut 0.08 protein_coding synonymous_variant LOW 858G>A Lys286Lys
M0199990 EAOCOPNJ_00010 6187 6 Gut 0.07 protein_coding synonymous_variant LOW 1056C>T Ser352Ser
M0199991 EAOCOPNJ_00010 6190 4 Gut 0.04 protein_coding synonymous_variant LOW 1059G>T Val353Val
M0199992 EAOCOPNJ_00004 6774 4 Gut 0.04 protein_coding downstream_gene_variant MODIFIER *4945T>C None
M0199993 EAOCOPNJ_00004 6784 4 Gut 0.04 protein_coding downstream_gene_variant MODIFIER *4955A>T None
M0199994 EAOCOPNJ_00004 6797 4 Gut 0.04 protein_coding downstream_gene_variant MODIFIER *4968A>G None
M0199995 EAOCOPNJ_00004 6812 3 Gut 0.03 protein_coding downstream_gene_variant MODIFIER *4983A>G None
M0199996 EAOCOPNJ_00005 6837 4 Gut 0.04 protein_coding downstream_gene_variant MODIFIER *4062A>G None
M0199997 EAOCOPNJ_00005 6838 4 Gut 0.04 protein_coding downstream_gene_variant MODIFIER *4063T>A None
M0199998 EAOCOPNJ_00005 7112 6 Gut 0.07 protein_coding downstream_gene_variant MODIFIER *4337G>A None
M0199999 EAOCOPNJ_00008 3799 8 Gut 0.09 protein_coding synonymous_variant LOW 207A>G Glu69Glu
M0200000 EAOCOPNJ_00008 4090 18 Gut 0.20 protein_coding synonymous_variant LOW 498C>G Arg166Arg
M0200001 EAOCOPNJ_00008 4256 3 Gut 0.03 protein_coding synonymous_variant LOW 664C>T Leu222Leu
M0200002 EAOCOPNJ_00008 4501 3 Gut 0.03 protein_coding synonymous_variant LOW 909C>T Tyr303Tyr
M0200003 EAOCOPNJ_00010 5269 3 Gut 0.03 protein_coding synonymous_variant LOW 138G>A Arg46Arg
M0200004 EAOCOPNJ_00010 5302 13 Gut 0.14 protein_coding synonymous_variant LOW 171G>A Gly57Gly
M0200005 EAOCOPNJ_00010 5305 13 Gut 0.14 protein_coding synonymous_variant LOW 174C>T Ile58Ile
M0200006 EAOCOPNJ_00010 5344 14 Gut 0.16 protein_coding synonymous_variant LOW 213C>G Thr71Thr
M0200007 EAOCOPNJ_00010 5354 13 Gut 0.14 protein_coding synonymous_variant LOW 223C>T Leu75Leu
M0200008 EAOCOPNJ_00010 5836 3 Gut 0.03 protein_coding synonymous_variant LOW 705C>T Leu235Leu
M0200009 EAOCOPNJ_00010 5861 5 Gut 0.06 protein_coding synonymous_variant LOW 730C>T Leu244Leu
M0200010 EAOCOPNJ_00010 5950 8 Gut 0.09 protein_coding synonymous_variant LOW 819A>G Lys273Lys
M0200011 EAOCOPNJ_00010 5251 5 Gut 0.06 protein_coding synonymous_variant LOW 120G>A Pro40Pro
M0200012 EAOCOPNJ_00010 5431 9 Gut 0.10 protein_coding synonymous_variant LOW 300C>T Asp100Asp
M0200013 EAOCOPNJ_00010 5674 7 Gut 0.08 protein_coding synonymous_variant LOW 543G>A Gln181Gln
M0200014 EAOCOPNJ_00010 5704 10 Gut 0.11 protein_coding synonymous_variant LOW 573C>T Leu191Leu
M0200015 EAOCOPNJ_00010 5806 8 Gut 0.09 protein_coding synonymous_variant LOW 675G>A Gly225Gly
M0200016 EAOCOPNJ_00010 5809 8 Gut 0.09 protein_coding synonymous_variant LOW 678T>G Arg226Arg
M0200017 EAOCOPNJ_00010 5978 3 Gut 0.03 protein_coding synonymous_variant LOW 847C>A Arg283Arg
M0200018 EAOCOPNJ_00010 6043 3 Gut 0.03 protein_coding synonymous_variant LOW 912G>A Leu304Leu
M0200019 EAOCOPNJ_00010 6112 3 Gut 0.03 protein_coding synonymous_variant LOW 981G>A Ala327Ala
M0200020 EAOCOPNJ_00008 4594 5 Gut 0.06 protein_coding synonymous_variant LOW 1002G>A Pro334Pro
M0200021 EAOCOPNJ_00008 4606 5 Gut 0.06 protein_coding synonymous_variant LOW 1014G>T Arg338Arg
M0200022 EAOCOPNJ_00008 4609 5 Gut 0.06 protein_coding synonymous_variant LOW 1017C>T Pro339Pro
M0200023 EAOCOPNJ_00008 4627 5 Gut 0.06 protein_coding synonymous_variant LOW 1035G>T Arg345Arg
M0200024 EAOCOPNJ_00008 4684 5 Gut 0.06 protein_coding synonymous_variant LOW 1092C>T His364His
M0200025 EAOCOPNJ_00009 5081 4 Gut 0.04 protein_coding missense_variant MODERATE 133C>T Pro45Ser
M0200026 EAOCOPNJ_00010 5491 3 Gut 0.03 protein_coding synonymous_variant LOW 360T>C Asn120Asn
M0200027 EAOCOPNJ_00010 6649 7 Gut 0.08 protein_coding synonymous_variant LOW 1518C>A Gly506Gly
M0200028 EAOCOPNJ_00008 3658 6 Gut 0.07 protein_coding synonymous_variant LOW 66C>T Asp22Asp
M0200029 EAOCOPNJ_00008 3745 4 Gut 0.04 protein_coding synonymous_variant LOW 153G>A Thr51Thr
M0200030 EAOCOPNJ_00008 3844 3 Gut 0.03 protein_coding synonymous_variant LOW 252C>T Phe84Phe
M0200031 EAOCOPNJ_00008 4030 5 Gut 0.06 protein_coding synonymous_variant LOW 438A>G Glu146Glu
M0200032 EAOCOPNJ_00008 4033 6 Gut 0.07 protein_coding synonymous_variant LOW 441C>T Ala147Ala
M0200033 EAOCOPNJ_00008 4087 5 Gut 0.06 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0200034 EAOCOPNJ_00009 4732 6 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -217C>A None
M0200035 EAOCOPNJ_00010 5248 5 Gut 0.06 protein_coding synonymous_variant LOW 117C>T Phe39Phe
M0200036 EAOCOPNJ_00010 5887 6 Gut 0.07 protein_coding synonymous_variant LOW 756C>T Asn252Asn
M0200037 EAOCOPNJ_00010 6031 6 Gut 0.07 protein_coding synonymous_variant LOW 900C>T Tyr300Tyr
M0200038 EAOCOPNJ_00010 6145 3 Gut 0.03 protein_coding synonymous_variant LOW 1014C>T Arg338Arg
M0200039 EAOCOPNJ_00010 6352 7 Gut 0.08 protein_coding synonymous_variant LOW 1221C>T Gly407Gly
M0200040 EAOCOPNJ_00008 3928 4 Gut 0.04 protein_coding synonymous_variant LOW 336C>T Leu112Leu
M0200041 EAOCOPNJ_00008 3931 4 Gut 0.04 protein_coding synonymous_variant LOW 339A>G Ser113Ser
M0200042 EAOCOPNJ_00009 4805 6 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -144G>A None
M0200043 EAOCOPNJ_00009 4811 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -138A>G None
M0200044 EAOCOPNJ_00008 3610 4 Gut 0.04 protein_coding synonymous_variant LOW 18C>T Phe6Phe
M0200045 EAOCOPNJ_00008 3685 5 Gut 0.06 protein_coding synonymous_variant LOW 93C>T Ile31Ile
M0200046 EAOCOPNJ_00008 3691 4 Gut 0.04 protein_coding synonymous_variant LOW 99G>A Gln33Gln
M0200047 EAOCOPNJ_00008 3742 4 Gut 0.04 protein_coding synonymous_variant LOW 150G>A Leu50Leu
M0200048 EAOCOPNJ_00008 3964 4 Gut 0.04 protein_coding synonymous_variant LOW 372G>A Gln124Gln
M0200049 EAOCOPNJ_00008 4111 4 Gut 0.04 protein_coding synonymous_variant LOW 519G>A Glu173Glu
M0200050 EAOCOPNJ_00008 4132 5 Gut 0.06 protein_coding synonymous_variant LOW 540G>A Arg180Arg
M0200051 EAOCOPNJ_00008 4171 4 Gut 0.04 protein_coding synonymous_variant LOW 579G>A Gln193Gln
M0200052 EAOCOPNJ_00008 4384 4 Gut 0.04 protein_coding synonymous_variant LOW 792G>A Lys264Lys
M0200053 EAOCOPNJ_00008 4441 4 Gut 0.04 protein_coding missense_variant MODERATE 849G>C Glu283Asp
M0200054 EAOCOPNJ_00008 4453 4 Gut 0.04 protein_coding synonymous_variant LOW 861G>A Arg287Arg
M0200055 EAOCOPNJ_00008 4540 4 Gut 0.04 protein_coding synonymous_variant LOW 948G>A Ala316Ala
M0200056 EAOCOPNJ_00008 4665 5 Gut 0.06 protein_coding missense_variant MODERATE 1073G>A Arg358Lys
M0200057 EAOCOPNJ_00008 4672 5 Gut 0.06 protein_coding synonymous_variant LOW 1080G>A Gln360Gln
M0200058 EAOCOPNJ_00009 4727 5 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -222C>A None
M0200059 EAOCOPNJ_00009 4948 4 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1T>A None
M0200060 EAOCOPNJ_00010 5203 4 Gut 0.04 protein_coding synonymous_variant LOW 72G>A Lys24Lys
M0200061 EAOCOPNJ_00010 5272 4 Gut 0.04 protein_coding synonymous_variant LOW 141G>A Lys47Lys
M0200062 EAOCOPNJ_00010 5299 5 Gut 0.06 protein_coding synonymous_variant LOW 168C>T Asn56Asn
M0200063 EAOCOPNJ_00010 5395 5 Gut 0.06 protein_coding synonymous_variant LOW 264C>T Val88Val
M0200064 EAOCOPNJ_00010 5423 4 Gut 0.04 protein_coding synonymous_variant LOW 292C>T Leu98Leu
M0200065 EAOCOPNJ_00010 5642 3 Gut 0.03 protein_coding missense_variant MODERATE 511A>G Lys171Glu
M0200066 EAOCOPNJ_00010 5782 5 Gut 0.06 protein_coding synonymous_variant LOW 651G>T Val217Val
M0200067 EAOCOPNJ_00010 5830 5 Gut 0.06 protein_coding synonymous_variant LOW 699C>T Phe233Phe
M0200068 EAOCOPNJ_00010 5998 5 Gut 0.06 protein_coding synonymous_variant LOW 867G>A Arg289Arg
M0200069 EAOCOPNJ_00010 6307 7 Gut 0.08 protein_coding synonymous_variant LOW 1176T>C Pro392Pro
M0200070 EAOCOPNJ_00010 6552 5 Gut 0.06 protein_coding missense_variant MODERATE 1421C>T Pro474Leu
M0200071 EAOCOPNJ_00010 6558 5 Gut 0.06 protein_coding missense_variant MODERATE 1427C>T Ala476Val
M0200072 EAOCOPNJ_00004 6662 6 Gut 0.07 protein_coding downstream_gene_variant MODIFIER *4833C>A None
M0200073 EAOCOPNJ_00008 3438 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -155G>T None
M0200074 EAOCOPNJ_00008 3440 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -153A>G None
M0200075 EAOCOPNJ_00008 3441 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -152G>A None
M0200076 EAOCOPNJ_00010 5275 3 Gut 0.03 protein_coding synonymous_variant LOW 144C>T Gly48Gly
M0200077 EAOCOPNJ_00003 632 3 Gut 0.03 protein_coding synonymous_variant LOW 96A>C Arg32Arg
M0200078 EAOCOPNJ_00003 738 4 Gut 0.04 protein_coding missense_variant MODERATE 202A>T Thr68Ser
M0200079 EAOCOPNJ_00009 5062 3 Gut 0.03 protein_coding synonymous_variant LOW 114A>G Arg38Arg
M0200080 EAOCOPNJ_00003 629 3 Gut 0.03 protein_coding synonymous_variant LOW 93A>G Leu31Leu
M0200081 EAOCOPNJ_00008 4076 4 Gut 0.04 protein_coding synonymous_variant LOW 484C>T Leu162Leu
M0200082 EAOCOPNJ_00008 3418 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -175G>A None
M0200083 EAOCOPNJ_00008 3430 3 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -163A>G None
M0200084 EAOCOPNJ_00008 4039 3 Gut 0.03 protein_coding synonymous_variant LOW 447G>A Thr149Thr
M0200085 EAOCOPNJ_00008 4057 3 Gut 0.03 protein_coding synonymous_variant LOW 465C>T His155His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
EAOCOPNJ_00005 ARO:3000375 99.1 2.77e-163 1 229 1.0000 0.9234 macrolide antibiotic Erm 23S ribosomal RNA methyltransferase antibiotic target alteration






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term