Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1226
  Reference Plasmid   NZ_CP137560.1
  Reference Plasmid Size   317413
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0200106 FBCDFPHF_00293 304685 3 Gut 0.08 protein_coding missense_variant MODERATE 703G>A Ala235Thr
M0200107 FBCDFPHF_00293 304850 4 Gut 0.11 protein_coding missense_variant MODERATE 538C>T Leu180Phe
M0200108 FBCDFPHF_00293 305067 3 Gut 0.08 protein_coding synonymous_variant LOW 321C>T Gly107Gly
M0200109 FBCDFPHF_00293 305106 4 Gut 0.11 protein_coding synonymous_variant LOW 282T>C Ile94Ile
M0200110 FBCDFPHF_00293 305263 3 Gut 0.08 protein_coding missense_variant MODERATE 125G>A Gly42Glu
M0200111 FBCDFPHF_00293 305340 3 Gut 0.08 protein_coding missense_variant MODERATE 48G>A Met16Ile
M0200112 FBCDFPHF_00294 305498 3 Gut 0.08 protein_coding missense_variant MODERATE 1747C>A Gln583Lys
M0200113 FBCDFPHF_00294 305676 5 Gut 0.14 protein_coding synonymous_variant LOW 1569T>C Ile523Ile
M0200114 FBCDFPHF_00294 305725 4 Gut 0.11 protein_coding missense_variant MODERATE 1520A>G Asp507Gly
M0200115 FBCDFPHF_00294 305727 4 Gut 0.11 protein_coding missense_variant MODERATE 1518C>G Ser506Arg
M0200116 FBCDFPHF_00294 305728 4 Gut 0.11 protein_coding missense_variant MODERATE 1517G>A Ser506Asn
M0200117 FBCDFPHF_00294 305969 4 Gut 0.11 protein_coding missense_variant MODERATE 1276G>A Asp426Asn
M0200118 FBCDFPHF_00294 306033 4 Gut 0.11 protein_coding synonymous_variant LOW 1212T>A Ile404Ile
M0200119 FBCDFPHF_00294 306618 6 Gut 0.17 protein_coding synonymous_variant LOW 627T>A Ala209Ala
M0200120 FBCDFPHF_00294 306624 6 Gut 0.17 protein_coding synonymous_variant LOW 621C>T Thr207Thr
M0200121 FBCDFPHF_00294 306627 6 Gut 0.17 protein_coding synonymous_variant LOW 618C>T Asn206Asn
M0200122 FBCDFPHF_00294 306630 6 Gut 0.17 protein_coding synonymous_variant LOW 615C>T Tyr205Tyr
M0200123 FBCDFPHF_00294 306635 6 Gut 0.17 protein_coding missense_variant MODERATE 610T>G Ser204Ala
M0200124 FBCDFPHF_00294 306660 6 Gut 0.17 protein_coding synonymous_variant LOW 585C>T Ala195Ala
M0200125 FBCDFPHF_00294 306666 6 Gut 0.17 protein_coding synonymous_variant LOW 579G>A Val193Val
M0200126 FBCDFPHF_00294 306705 6 Gut 0.17 protein_coding synonymous_variant LOW 540T>C Asn180Asn
M0200127 FBCDFPHF_00294 306714 6 Gut 0.17 protein_coding synonymous_variant LOW 531A>G Ala177Ala
M0200128 FBCDFPHF_00294 306723 6 Gut 0.17 protein_coding synonymous_variant LOW 522G>T Ala174Ala
M0200129 FBCDFPHF_00294 306742 5 Gut 0.14 protein_coding missense_variant MODERATE 503C>T Ala168Val
M0200130 FBCDFPHF_00294 306744 5 Gut 0.14 protein_coding synonymous_variant LOW 501T>C Tyr167Tyr
M0200131 FBCDFPHF_00294 306750 5 Gut 0.14 protein_coding synonymous_variant LOW 495G>A Leu165Leu
M0200132 FBCDFPHF_00294 306765 5 Gut 0.14 protein_coding missense_variant MODERATE 480G>C Lys160Asn
M0200133 FBCDFPHF_00294 306777 5 Gut 0.14 protein_coding synonymous_variant LOW 468C>T Asn156Asn
M0200134 FBCDFPHF_00294 306786 5 Gut 0.14 protein_coding synonymous_variant LOW 459C>T Tyr153Tyr
M0200135 FBCDFPHF_00294 306819 6 Gut 0.17 protein_coding synonymous_variant LOW 426T>C Arg142Arg
M0200136 FBCDFPHF_00294 306850 6 Gut 0.17 protein_coding missense_variant MODERATE 395G>C Ser132Thr
M0200137 FBCDFPHF_00294 306851 6 Gut 0.17 protein_coding missense_variant MODERATE 394A>G Ser132Gly
M0200138 FBCDFPHF_00294 306852 6 Gut 0.17 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0200139 FBCDFPHF_00294 306870 6 Gut 0.17 protein_coding synonymous_variant LOW 375T>A Ser125Ser
M0200140 FBCDFPHF_00294 306888 5 Gut 0.14 protein_coding synonymous_variant LOW 357C>T Gly119Gly
M0200141 FBCDFPHF_00294 306892 5 Gut 0.14 protein_coding missense_variant MODERATE 353C>G Ala118Gly
M0200142 FBCDFPHF_00294 306900 5 Gut 0.14 protein_coding synonymous_variant LOW 345C>T Pro115Pro
M0200143 FBCDFPHF_00294 306909 5 Gut 0.14 protein_coding synonymous_variant LOW 336C>T Asn112Asn
M0200144 FBCDFPHF_00294 306915 5 Gut 0.14 protein_coding synonymous_variant LOW 330G>T Val110Val
M0200145 FBCDFPHF_00294 306924 5 Gut 0.14 protein_coding synonymous_variant LOW 321G>A Ala107Ala
M0200146 FBCDFPHF_00294 306933 5 Gut 0.14 protein_coding synonymous_variant LOW 312C>T Asp104Asp
M0200147 FBCDFPHF_00294 306944 5 Gut 0.14 protein_coding synonymous_variant LOW 301C>T Leu101Leu
M0200148 FBCDFPHF_00294 306955 5 Gut 0.14 protein_coding missense_variant MODERATE 290C>T Thr97Ile
M0200149 FBCDFPHF_00294 306966 5 Gut 0.14 protein_coding synonymous_variant LOW 279C>T Asn93Asn
M0200150 FBCDFPHF_00294 307031 5 Gut 0.14 protein_coding synonymous_variant LOW 214C>T Leu72Leu
M0200151 FBCDFPHF_00292 307263 5 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -4210T>A None
M0200152 FBCDFPHF_00295 307477 5 Gut 0.14 protein_coding synonymous_variant LOW 3285G>C Leu1095Leu
M0200153 FBCDFPHF_00295 307522 5 Gut 0.14 protein_coding synonymous_variant LOW 3240C>T Ser1080Ser
M0200154 FBCDFPHF_00295 307695 6 Gut 0.17 protein_coding missense_variant MODERATE 3067A>G Thr1023Ala
M0200155 FBCDFPHF_00295 307878 5 Gut 0.14 protein_coding synonymous_variant LOW 2884C>T Leu962Leu
M0200156 FBCDFPHF_00295 307912 6 Gut 0.17 protein_coding synonymous_variant LOW 2850G>A Pro950Pro
M0200157 FBCDFPHF_00295 307947 4 Gut 0.11 protein_coding missense_variant MODERATE 2815A>G Asn939Asp
M0200158 FBCDFPHF_00295 308017 6 Gut 0.17 protein_coding synonymous_variant LOW 2745T>C Val915Val
M0200159 FBCDFPHF_00295 308113 5 Gut 0.14 protein_coding synonymous_variant LOW 2649C>T Asp883Asp
M0200160 FBCDFPHF_00295 308434 4 Gut 0.11 protein_coding synonymous_variant LOW 2328T>C Asn776Asn
M0200161 FBCDFPHF_00295 308502 4 Gut 0.11 protein_coding missense_variant MODERATE 2260C>T Pro754Ser
M0200162 FBCDFPHF_00295 308626 4 Gut 0.11 protein_coding synonymous_variant LOW 2136C>T Leu712Leu
M0200163 FBCDFPHF_00295 309001 4 Gut 0.11 protein_coding synonymous_variant LOW 1761C>T Tyr587Tyr
M0200164 FBCDFPHF_00295 309091 5 Gut 0.14 protein_coding synonymous_variant LOW 1671T>C Ser557Ser
M0200165 FBCDFPHF_00295 309214 4 Gut 0.11 protein_coding synonymous_variant LOW 1548T>A Pro516Pro
M0200166 FBCDFPHF_00295 309271 4 Gut 0.11 protein_coding synonymous_variant LOW 1491C>T Ala497Ala
M0200167 FBCDFPHF_00295 309400 5 Gut 0.14 protein_coding synonymous_variant LOW 1362C>T Gly454Gly
M0200168 FBCDFPHF_00295 309403 4 Gut 0.11 protein_coding synonymous_variant LOW 1359G>A Leu453Leu
M0200169 FBCDFPHF_00295 309463 5 Gut 0.14 protein_coding synonymous_variant LOW 1299T>C Ser433Ser
M0200170 FBCDFPHF_00295 309508 5 Gut 0.14 protein_coding synonymous_variant LOW 1254A>C Arg418Arg
M0200171 FBCDFPHF_00295 309613 4 Gut 0.11 protein_coding synonymous_variant LOW 1149G>A Lys383Lys
M0200172 FBCDFPHF_00295 309664 5 Gut 0.14 protein_coding synonymous_variant LOW 1098T>C Ile366Ile
M0200173 FBCDFPHF_00295 309718 5 Gut 0.14 protein_coding synonymous_variant LOW 1044T>C Gly348Gly
M0200174 FBCDFPHF_00295 309751 4 Gut 0.11 protein_coding synonymous_variant LOW 1011C>T Tyr337Tyr
M0200175 FBCDFPHF_00295 309994 4 Gut 0.11 protein_coding synonymous_variant LOW 768C>T Gly256Gly
M0200176 FBCDFPHF_00295 310006 3 Gut 0.08 protein_coding synonymous_variant LOW 756C>T Ser252Ser
M0200177 FBCDFPHF_00295 310170 3 Gut 0.08 protein_coding synonymous_variant LOW 592C>T Leu198Leu
M0200178 FBCDFPHF_00295 310188 4 Gut 0.11 protein_coding missense_variant MODERATE 574T>C Phe192Leu
M0200179 FBCDFPHF_00295 310350 3 Gut 0.08 protein_coding missense_variant MODERATE 412G>A Ala138Thr
M0200180 FBCDFPHF_00295 310500 3 Gut 0.08 protein_coding missense_variant MODERATE 262G>A Asp88Asn
M0200181 FBCDFPHF_00295 310572 3 Gut 0.08 protein_coding missense_variant MODERATE 190G>T Ala64Ser
M0200182 FBCDFPHF_00295 310692 4 Gut 0.11 protein_coding missense_variant MODERATE 70T>A Cys24Ser
M0200183 FBCDFPHF_00295 310714 4 Gut 0.11 protein_coding synonymous_variant LOW 48T>C Ala16Ala
M0200184 FBCDFPHF_00296 311049 3 Gut 0.08 protein_coding missense_variant MODERATE 862G>A Asp288Asn
M0200185 FBCDFPHF_00296 311068 3 Gut 0.08 protein_coding synonymous_variant LOW 843A>G Val281Val
M0200186 FBCDFPHF_00296 311245 3 Gut 0.08 protein_coding synonymous_variant LOW 666C>T Gly222Gly
M0200187 FBCDFPHF_00296 311497 3 Gut 0.08 protein_coding synonymous_variant LOW 414T>C Val138Val
M0200188 FBCDFPHF_00296 311638 3 Gut 0.08 protein_coding synonymous_variant LOW 273A>T Ala91Ala
M0200189 FBCDFPHF_00296 311739 3 Gut 0.08 protein_coding missense_variant MODERATE 172G>A Val58Met
M0200190 FBCDFPHF_00296 311854 3 Gut 0.08 protein_coding synonymous_variant LOW 57A>G Glu19Glu
M0200191 FBCDFPHF_00269 267729 10 Gut 0.28 protein_coding synonymous_variant LOW 147A>G Lys49Lys
M0200192 FBCDFPHF_00269 267771 10 Gut 0.28 protein_coding synonymous_variant LOW 189A>T Val63Val
M0200193 FBCDFPHF_00269 267803 10 Gut 0.28 protein_coding missense_variant MODERATE 221T>C Val74Ala
M0200194 FBCDFPHF_00269 267831 10 Gut 0.28 protein_coding synonymous_variant LOW 249T>C Asn83Asn
M0200195 FBCDFPHF_00269 267846 10 Gut 0.28 protein_coding synonymous_variant LOW 264T>C Asp88Asp
M0200196 FBCDFPHF_00269 267864 10 Gut 0.28 protein_coding synonymous_variant LOW 282T>G Ser94Ser
M0200197 FBCDFPHF_00269 268002 10 Gut 0.28 protein_coding synonymous_variant LOW 420G>A Gln140Gln
M0200198 FBCDFPHF_00269 268068 10 Gut 0.28 protein_coding synonymous_variant LOW 486A>G Ser162Ser
M0200199 FBCDFPHF_00269 268431 8 Gut 0.22 protein_coding synonymous_variant LOW 849A>G Gln283Gln
M0200200 FBCDFPHF_00269 268455 8 Gut 0.22 protein_coding synonymous_variant LOW 873G>A Glu291Glu
M0200201 FBCDFPHF_00269 268456 8 Gut 0.22 protein_coding synonymous_variant LOW 874T>C Leu292Leu
M0200202 FBCDFPHF_00269 268479 8 Gut 0.22 protein_coding synonymous_variant LOW 897A>G Glu299Glu
M0200203 FBCDFPHF_00269 268494 8 Gut 0.22 protein_coding synonymous_variant LOW 912A>C Gly304Gly
M0200204 FBCDFPHF_00269 268500 8 Gut 0.22 protein_coding synonymous_variant LOW 918T>A Ser306Ser
M0200205 FBCDFPHF_00269 268599 3 Gut 0.08 protein_coding synonymous_variant LOW 1017G>A Gln339Gln
M0200206 FBCDFPHF_00268 266907 10 Gut 0.28 protein_coding synonymous_variant LOW 357C>T Thr119Thr
M0200207 FBCDFPHF_00268 266922 10 Gut 0.28 protein_coding synonymous_variant LOW 342T>C Val114Val
M0200208 FBCDFPHF_00268 266970 10 Gut 0.28 protein_coding synonymous_variant LOW 294T>G Ser98Ser
M0200209 FBCDFPHF_00268 266979 9 Gut 0.25 protein_coding synonymous_variant LOW 285T>C Thr95Thr
M0200210 FBCDFPHF_00268 267024 10 Gut 0.28 protein_coding synonymous_variant LOW 240C>T Gly80Gly
M0200211 FBCDFPHF_00268 267027 10 Gut 0.28 protein_coding synonymous_variant LOW 237C>G Thr79Thr
M0200212 FBCDFPHF_00268 267105 10 Gut 0.28 protein_coding synonymous_variant LOW 159T>C Asn53Asn
M0200213 FBCDFPHF_00268 267150 10 Gut 0.28 protein_coding missense_variant MODERATE 114T>G Ile38Met
M0200214 FBCDFPHF_00268 267152 10 Gut 0.28 protein_coding missense_variant MODERATE 112A>G Ile38Val
M0200215 FBCDFPHF_00268 267153 10 Gut 0.28 protein_coding synonymous_variant LOW 111C>T Asp37Asp
M0200216 FBCDFPHF_00268 267210 10 Gut 0.28 protein_coding synonymous_variant LOW 54T>C Cys18Cys
M0200217 FBCDFPHF_00263 267507 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3725A>T None
M0200218 FBCDFPHF_00263 267514 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3732T>A None
M0200219 FBCDFPHF_00263 267521 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3739A>G None
M0200220 FBCDFPHF_00263 267524 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3742A>T None
M0200221 FBCDFPHF_00263 267525 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3743T>C None
M0200222 FBCDFPHF_00263 267562 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3780A>T None
M0200223 FBCDFPHF_00263 267569 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3787A>G None
M0200224 FBCDFPHF_00263 267572 9 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3790C>T None
M0200225 FBCDFPHF_00269 267616 9 Gut 0.25 protein_coding missense_variant MODERATE 34A>G Lys12Glu
M0200226 FBCDFPHF_00269 267696 9 Gut 0.25 protein_coding synonymous_variant LOW 114A>G Gln38Gln
M0200227 FBCDFPHF_00269 267782 9 Gut 0.25 protein_coding missense_variant MODERATE 200A>G Lys67Arg
M0200228 FBCDFPHF_00269 267810 9 Gut 0.25 protein_coding synonymous_variant LOW 228G>A Thr76Thr
M0200229 FBCDFPHF_00269 267882 9 Gut 0.25 protein_coding synonymous_variant LOW 300T>C Asn100Asn
M0200230 FBCDFPHF_00269 268023 9 Gut 0.25 protein_coding synonymous_variant LOW 441T>C Phe147Phe
M0200231 FBCDFPHF_00269 268029 9 Gut 0.25 protein_coding synonymous_variant LOW 447G>C Thr149Thr
M0200232 FBCDFPHF_00269 268062 9 Gut 0.25 protein_coding synonymous_variant LOW 480G>A Pro160Pro
M0200233 FBCDFPHF_00269 268090 9 Gut 0.25 protein_coding missense_variant MODERATE 508G>A Val170Ile
M0200234 FBCDFPHF_00269 268464 7 Gut 0.19 protein_coding synonymous_variant LOW 882C>T Gly294Gly
M0200235 FBCDFPHF_00269 268506 6 Gut 0.17 protein_coding synonymous_variant LOW 924G>A Gln308Gln
M0200236 FBCDFPHF_00183 186179 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4349T>C None
M0200237 FBCDFPHF_00183 186208 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4378A>G None
M0200238 FBCDFPHF_00183 186302 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4472A>G None
M0200239 FBCDFPHF_00183 186357 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4527A>G None
M0200240 FBCDFPHF_00183 186372 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4542A>G None
M0200241 FBCDFPHF_00183 186374 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4544A>G None
M0200242 FBCDFPHF_00183 186381 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4551T>C None
M0200243 FBCDFPHF_00196 186414 3 Gut 0.08 protein_coding synonymous_variant LOW 408C>T Phe136Phe
M0200244 FBCDFPHF_00196 186445 3 Gut 0.08 protein_coding missense_variant MODERATE 377C>T Ala126Val
M0200245 FBCDFPHF_00196 186477 3 Gut 0.08 protein_coding synonymous_variant LOW 345T>C Asn115Asn
M0200246 FBCDFPHF_00196 186524 3 Gut 0.08 protein_coding synonymous_variant LOW 298T>C Leu100Leu
M0200247 FBCDFPHF_00196 186688 3 Gut 0.08 protein_coding missense_variant MODERATE 134T>C Ile45Thr
M0200248 FBCDFPHF_00184 186910 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4441A>T None
M0200249 FBCDFPHF_00197 187080 3 Gut 0.08 protein_coding synonymous_variant LOW 60A>G Glu20Glu
M0200250 FBCDFPHF_00268 266898 4 Gut 0.11 protein_coding synonymous_variant LOW 366C>T Asn122Asn
M0200251 FBCDFPHF_00269 268317 6 Gut 0.17 protein_coding missense_variant MODERATE 735A>T Glu245Asp
M0200252 FBCDFPHF_00288 293399 3 Gut 0.08 protein_coding synonymous_variant LOW 1813C>T Leu605Leu
M0200253 FBCDFPHF_00288 293412 3 Gut 0.08 protein_coding missense_variant MODERATE 1826T>C Val609Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FBCDFPHF_00244 BCS85052.1|CE12 72.2 1.46e-204 17 395 0.9595 1
FBCDFPHF_00251 QIK58371.1|GH2 77.5 0 1 604 0.9934 0.995
FBCDFPHF_00252 QVJ80137.1|GH43_3 72.8 1.15e-191 9 338 0.9706 0.9457
FBCDFPHF_00255 ADE83031.1|GH182 73.7 0 1 669 1 1
FBCDFPHF_00290 AUI45868.1|GH130 77.7 1.68e-210 1 332 0.997 1
FBCDFPHF_00291 QNT66671.1|GH125 88.7 0 1 495 1 1
FBCDFPHF_00292 QNT66670.1|GH92 81.2 0 1 728 1 1
FBCDFPHF_00293 QVJ82164.1|GH92 72.5 0 15 763 0.9765 0.9827





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term